Wall clock time and date at job start Tue Mar 31 2020 08:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35898 * 116.99594 * 2 1 4 4 C 1.38749 * 120.05836 * 1.81558 * 3 2 1 5 5 C 1.38129 * 119.94795 * 179.97438 * 4 3 2 6 6 C 1.38286 * 120.05342 * 0.02562 * 5 4 3 7 7 C 1.38252 * 120.11071 * 359.74021 * 6 5 4 8 8 C 1.38168 * 120.05437 * 0.51328 * 7 6 5 9 9 C 1.50699 * 120.02661 * 179.76835 * 8 7 6 10 10 C 1.52996 * 109.47101 * 231.27612 * 9 8 7 11 11 H 1.08997 * 109.47372 * 35.23236 * 10 9 8 12 12 N 1.46903 * 109.46788 * 275.23314 * 10 9 8 13 13 C 1.46894 * 111.00097 * 305.88776 * 12 10 9 14 14 H 1.09005 * 109.47260 * 348.03771 * 13 12 10 15 15 C 1.52999 * 109.47303 * 108.04018 * 13 12 10 16 16 C 1.53008 * 109.47257 * 228.03961 * 13 12 10 17 17 C 1.50694 * 109.46958 * 64.32316 * 16 13 12 18 18 H 1.07999 * 120.00067 * 354.83828 * 17 16 13 19 19 C 1.37877 * 120.00104 * 174.84035 * 17 16 13 20 20 N 1.31517 * 119.99964 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00499 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47530 * 89.99479 * 21 19 17 23 23 H 1.48499 * 109.47348 * 209.99916 * 21 19 17 24 24 H 1.48507 * 109.46853 * 329.99634 * 21 19 17 25 25 C 1.52993 * 109.47478 * 155.23406 * 10 9 8 26 26 C 1.53004 * 109.47173 * 69.70355 * 25 10 9 27 27 C 1.53001 * 109.47697 * 189.70648 * 25 10 9 28 28 H 1.09006 * 109.47062 * 304.95617 * 1 2 3 29 29 H 1.08989 * 109.47638 * 64.96335 * 1 2 3 30 30 H 1.09000 * 109.46825 * 184.96248 * 1 2 3 31 31 H 1.08004 * 120.02898 * 359.95321 * 4 3 2 32 32 H 1.07993 * 119.97165 * 179.97438 * 5 4 3 33 33 H 1.07994 * 119.94639 * 179.97438 * 6 5 4 34 34 H 1.08000 * 119.96903 * 180.25811 * 7 6 5 35 35 H 1.09002 * 109.47372 * 111.27068 * 9 8 7 36 36 H 1.09000 * 109.47124 * 351.27421 * 9 8 7 37 37 H 1.00906 * 111.00115 * 181.93517 * 12 10 9 38 38 H 1.08993 * 109.47062 * 65.13668 * 15 13 12 39 39 H 1.08999 * 109.47155 * 185.13987 * 15 13 12 40 40 H 1.08998 * 109.47190 * 305.13524 * 15 13 12 41 41 H 1.09002 * 109.47040 * 184.32703 * 16 13 12 42 42 H 1.08998 * 109.46591 * 304.32175 * 16 13 12 43 43 H 0.96994 * 120.00168 * 180.02562 * 20 19 17 44 44 H 1.09002 * 109.47232 * 309.70878 * 25 10 9 45 45 H 1.09000 * 109.46913 * 45.13538 * 26 25 10 46 46 H 1.09000 * 109.46881 * 165.13359 * 26 25 10 47 47 H 1.09000 * 109.47376 * 285.13398 * 26 25 10 48 48 H 1.09000 * 109.47416 * 186.38405 * 27 25 10 49 49 H 1.09003 * 109.46499 * 306.38072 * 27 25 10 50 50 H 1.08997 * 109.47000 * 66.37795 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2918 2.3750 0.0380 5 6 1.9212 3.6046 0.0385 6 6 3.3017 3.6759 0.0005 7 6 4.0554 2.5174 -0.0325 8 6 3.4305 1.2852 -0.0384 9 6 4.2526 0.0229 -0.0798 10 6 3.7477 -0.8778 -1.2088 11 1 3.4227 -0.2619 -2.0472 12 7 2.6176 -1.6822 -0.7251 13 6 2.9800 -2.4211 0.4916 14 1 4.0590 -2.3723 0.6387 15 6 2.2723 -1.7980 1.6965 16 6 2.5506 -3.8827 0.3477 17 6 3.3264 -4.5261 -0.7726 18 1 3.9913 -3.9306 -1.3805 19 6 3.1872 -5.8750 -1.0215 20 7 2.3778 -6.6003 -0.2809 21 14 4.1493 -6.6729 -2.4098 22 1 5.4552 -7.1558 -1.8934 23 1 3.3769 -7.8193 -2.9523 24 1 4.3807 -5.6776 -3.4874 25 6 4.8758 -1.8053 -1.6645 26 6 5.1672 -2.8313 -0.5675 27 6 4.4537 -2.5319 -2.9432 28 1 -0.3633 0.5888 0.8423 29 1 -0.3634 0.4348 -0.9310 30 1 -0.3633 -1.0238 0.0889 31 1 0.2136 2.3198 0.0669 32 1 1.3347 4.5109 0.0677 33 1 3.7920 4.6382 0.0005 34 1 5.1336 2.5758 -0.0579 35 1 4.1616 -0.5014 0.8716 36 1 5.2980 0.2757 -0.2566 37 1 2.2861 -2.3087 -1.4433 38 1 1.1952 -1.9283 1.5926 39 1 2.6111 -2.2871 2.6098 40 1 2.5066 -0.7346 1.7456 41 1 2.7495 -4.4132 1.2789 42 1 1.4847 -3.9278 0.1244 43 1 2.2802 -7.5494 -0.4558 44 1 5.7728 -1.2177 -1.8598 45 1 4.2280 -3.2329 -0.1869 46 1 5.7689 -3.6418 -0.9786 47 1 5.7121 -2.3501 0.2446 48 1 5.2076 -3.2743 -3.2050 49 1 3.4968 -3.0277 -2.7802 50 1 4.3560 -1.8113 -3.7551 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298838014.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:38 Heat of formation + Delta-G solvation = 84.339421 kcal Electronic energy + Delta-G solvation = -28010.424621 eV Core-core repulsion = 24621.221367 eV Total energy + Delta-G solvation = -3389.203253 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.40209 -39.10534 -36.92121 -33.97763 -32.81811 -32.12460 -30.05239 -29.59532 -27.71298 -27.34398 -26.72051 -25.94158 -23.11913 -23.00497 -21.81530 -21.00499 -19.08614 -18.87500 -17.52148 -16.57540 -15.98873 -15.53123 -15.27301 -14.94262 -14.65659 -14.34762 -14.26513 -13.63384 -13.59768 -13.29134 -12.81637 -12.75107 -12.42930 -12.20100 -12.08280 -11.78218 -11.63449 -11.38922 -11.26300 -11.18788 -11.00898 -10.89762 -10.71301 -10.56099 -10.52801 -10.48834 -10.36835 -10.07211 -9.84497 -9.71832 -9.50178 -8.93905 -8.60854 -8.40553 -8.03020 -7.67071 -6.93945 -6.03078 -4.01918 1.53151 1.73243 3.28301 3.36342 3.38005 3.87834 3.99625 4.43005 4.94056 4.98636 5.13929 5.20815 5.34133 5.41045 5.46784 5.51042 5.57275 5.60526 5.70144 5.79844 5.87166 5.94132 5.97739 6.03665 6.09454 6.17675 6.25482 6.33474 6.42202 6.50697 6.50976 6.54780 6.58050 6.63816 6.68879 6.77132 6.79075 6.86505 6.96964 7.02282 7.05526 7.08281 7.18547 7.55532 7.63792 7.77059 7.96334 8.02057 8.25511 8.41063 8.51963 9.04765 9.60870 11.08078 Molecular weight = 305.21amu Principal moments of inertia in cm(-1) A = 0.022167 B = 0.004843 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.822789 B = 5780.285575 C = 6394.747237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.220 6.220 3 C 0.141 3.859 4 C -0.223 4.223 5 C -0.091 4.091 6 C -0.173 4.173 7 C -0.087 4.087 8 C -0.111 4.111 9 C -0.073 4.073 10 C 0.104 3.896 11 H 0.066 0.934 12 N -0.640 5.640 13 C 0.029 3.971 14 H 0.102 0.898 15 C -0.129 4.129 16 C 0.005 3.995 17 C -0.563 4.563 18 H 0.112 0.888 19 C 0.064 3.936 20 N -0.890 5.890 21 Si 0.876 3.124 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.269 1.269 25 C -0.119 4.119 26 C -0.250 4.250 27 C -0.153 4.153 28 H 0.038 0.962 29 H 0.041 0.959 30 H 0.097 0.903 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.120 0.880 35 H 0.088 0.912 36 H 0.061 0.939 37 H 0.345 0.655 38 H 0.043 0.957 39 H 0.031 0.969 40 H 0.048 0.952 41 H 0.023 0.977 42 H 0.020 0.980 43 H 0.258 0.742 44 H 0.047 0.953 45 H 0.206 0.794 46 H 0.039 0.961 47 H 0.024 0.976 48 H 0.047 0.953 49 H 0.080 0.920 50 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.242 16.557 0.165 16.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.129 6.129 3 C 0.093 3.907 4 C -0.242 4.242 5 C -0.109 4.109 6 C -0.192 4.192 7 C -0.105 4.105 8 C -0.111 4.111 9 C -0.110 4.110 10 C -0.007 4.007 11 H 0.084 0.916 12 N -0.273 5.273 13 C -0.080 4.080 14 H 0.119 0.881 15 C -0.187 4.187 16 C -0.033 4.033 17 C -0.600 4.600 18 H 0.129 0.871 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.704 3.296 22 H -0.208 1.208 23 H -0.214 1.214 24 H -0.194 1.194 25 C -0.140 4.140 26 C -0.304 4.304 27 C -0.210 4.210 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.115 0.885 31 H 0.139 0.861 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.138 0.862 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.166 0.834 38 H 0.063 0.937 39 H 0.050 0.950 40 H 0.067 0.933 41 H 0.042 0.958 42 H 0.039 0.961 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.222 0.778 46 H 0.058 0.942 47 H 0.043 0.957 48 H 0.066 0.934 49 H 0.098 0.902 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -0.545 16.671 0.524 16.688 hybrid contribution 0.943 -1.005 -1.229 1.846 sum 0.398 15.666 -0.705 15.687 Atomic orbital electron populations 1.22984 0.82005 1.03389 0.99402 1.87382 1.18064 1.21551 1.85855 1.19239 0.92155 0.86071 0.93261 1.21256 0.99819 0.92700 1.10448 1.20814 0.94571 0.96777 0.98709 1.20858 0.93940 0.97901 1.06453 1.20859 0.99358 0.91401 0.98875 1.19283 0.91171 0.95401 1.05273 1.20782 0.96733 0.92620 1.00891 1.21474 0.90213 0.93648 0.95406 0.91563 1.60637 1.31096 1.27940 1.07601 1.22847 1.00971 0.94162 0.89973 0.88125 1.22006 1.00457 0.99416 0.96826 1.19530 0.97087 0.89237 0.97404 1.22597 1.26717 0.94432 1.16269 0.87128 1.25014 0.95015 0.97818 0.95925 1.69994 1.36754 1.06803 1.39274 0.86832 0.80183 0.79424 0.83120 1.20817 1.21446 1.19411 1.21826 0.98208 0.97463 0.96471 1.24787 1.10248 0.97922 0.97430 1.22031 1.03273 0.99531 0.96163 0.94360 0.93998 0.88481 0.86095 0.86865 0.86848 0.86236 0.89374 0.92001 0.83397 0.93743 0.94995 0.93291 0.95819 0.96137 0.93179 0.93406 0.77821 0.94170 0.95739 0.93424 0.90156 0.94269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.42 101.05 0.95 1.18 16 2 O -0.22 -3.25 3.01 -19.42 -0.06 -3.31 16 3 C 0.14 2.04 6.03 -39.22 -0.24 1.80 16 4 C -0.22 -2.88 9.05 -39.43 -0.36 -3.23 16 5 C -0.09 -1.07 10.04 -39.60 -0.40 -1.47 16 6 C -0.17 -2.04 10.04 -39.56 -0.40 -2.44 16 7 C -0.09 -1.10 9.67 -39.60 -0.38 -1.49 16 8 C -0.11 -1.59 5.23 -104.47 -0.55 -2.13 16 9 C -0.07 -1.09 4.25 -27.89 -0.12 -1.21 16 10 C 0.10 1.67 2.12 -67.72 -0.14 1.52 16 11 H 0.07 1.09 7.88 -51.93 -0.41 0.68 16 12 N -0.64 -11.09 3.19 -129.05 -0.41 -11.51 16 13 C 0.03 0.54 1.47 -67.71 -0.10 0.44 16 14 H 0.10 1.95 2.63 -73.40 -0.19 1.76 16 15 C -0.13 -2.26 7.64 37.16 0.28 -1.97 16 16 C 0.00 0.12 4.20 -27.88 -0.12 0.00 16 17 C -0.56 -13.90 6.22 -34.44 -0.21 -14.12 16 18 H 0.11 2.51 1.28 -52.75 -0.07 2.44 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -25.42 13.29 55.43 0.74 -24.69 16 21 Si 0.88 20.71 29.54 -169.99 -5.02 15.69 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 C -0.12 -2.04 2.61 -90.62 -0.24 -2.27 16 26 C -0.25 -4.83 5.55 37.16 0.21 -4.62 16 27 C -0.15 -2.71 8.15 37.16 0.30 -2.41 16 28 H 0.04 0.42 7.28 -51.93 -0.38 0.04 16 29 H 0.04 0.48 8.00 -51.94 -0.42 0.06 16 30 H 0.10 1.23 7.99 -51.93 -0.41 0.81 16 31 H 0.12 1.37 6.29 -52.48 -0.33 1.04 16 32 H 0.11 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.11 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.12 1.30 7.97 -52.49 -0.42 0.88 16 35 H 0.09 1.42 4.47 -51.93 -0.23 1.18 16 36 H 0.06 0.85 7.50 -51.93 -0.39 0.46 16 37 H 0.34 6.64 5.90 -39.29 -0.23 6.41 16 38 H 0.04 0.77 7.42 -51.93 -0.39 0.39 16 39 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.05 0.81 4.93 -51.93 -0.26 0.56 16 41 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.05 0.77 7.89 -51.93 -0.41 0.36 16 45 H 0.21 4.26 0.51 -118.56 -0.06 4.20 16 46 H 0.04 0.83 7.68 -51.93 -0.40 0.43 16 47 H 0.02 0.44 7.52 -51.93 -0.39 0.05 16 48 H 0.05 0.87 8.04 -51.93 -0.42 0.46 16 49 H 0.08 1.56 5.09 -51.93 -0.26 1.30 16 50 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 350.73 15.07 5.29 5.29 Total: -1.00 -26.90 350.73 -8.80 -35.70 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: -7.73 Total: 13.61 kcal Atomic # 6 Polarization: -29.19 SS G_CDS: -1.60 Total: -30.79 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 0.33 Total: -36.19 kcal Atomic # 8 Polarization: -3.25 SS G_CDS: -0.06 Total: -3.31 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -26.90 -8.80 -35.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298838014.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.039 kcal (2) G-P(sol) polarization free energy of solvation -26.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds