Wall clock time and date at job start Tue Mar 31 2020 08:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46480 * 2 1 4 4 C 1.53006 * 109.47191 * 240.00538 * 2 1 3 5 5 N 1.46502 * 109.47101 * 64.99635 * 4 2 1 6 6 C 1.39663 * 119.99806 * 180.02562 * 5 4 2 7 7 C 1.38973 * 120.04649 * 0.02562 * 6 5 4 8 8 C 1.38116 * 120.03003 * 179.97438 * 7 6 5 9 9 C 1.38216 * 120.13578 * 359.74695 * 8 7 6 10 10 C 1.38779 * 120.08401 * 0.51068 * 9 8 7 11 11 O 1.35897 * 120.00949 * 179.76812 * 10 9 8 12 12 C 1.42898 * 117.00481 * 359.71829 * 11 10 9 13 13 C 1.52997 * 109.47319 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47466 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99890 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99563 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46756 * 59.99920 * 18 16 14 20 20 H 1.48490 * 109.47381 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47117 * 300.00527 * 18 16 14 22 22 C 1.38609 * 119.96517 * 359.48769 * 10 9 8 23 23 C 1.52998 * 109.47575 * 120.00118 * 2 1 3 24 24 C 1.53000 * 109.47088 * 180.02562 * 23 2 1 25 25 C 1.52999 * 109.46949 * 300.00389 * 23 2 1 26 26 C 1.52999 * 109.46793 * 60.00151 * 23 2 1 27 27 H 1.09007 * 109.46480 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47186 * 299.98933 * 1 2 3 29 29 H 1.08997 * 109.47706 * 59.99837 * 1 2 3 30 30 H 1.09001 * 109.46841 * 304.99696 * 4 2 1 31 31 H 1.09000 * 109.46674 * 184.99400 * 4 2 1 32 32 H 0.97001 * 119.99801 * 359.97438 * 5 4 2 33 33 H 1.07996 * 119.98339 * 359.95966 * 7 6 5 34 34 H 1.08007 * 119.92769 * 180.02562 * 8 7 6 35 35 H 1.07991 * 119.95689 * 180.26971 * 9 8 7 36 36 H 1.09002 * 109.47259 * 300.00417 * 12 11 10 37 37 H 1.09001 * 109.47074 * 60.00439 * 12 11 10 38 38 H 1.09002 * 109.47153 * 300.00307 * 13 12 11 39 39 H 1.08998 * 109.47533 * 59.99936 * 13 12 11 40 40 H 0.97002 * 119.99731 * 180.02562 * 17 16 14 41 41 H 1.08007 * 120.06150 * 180.27477 * 22 10 9 42 42 H 1.08996 * 109.47090 * 60.00390 * 24 23 2 43 43 H 1.09002 * 109.46575 * 179.97438 * 24 23 2 44 44 H 1.08998 * 109.47264 * 299.99906 * 24 23 2 45 45 H 1.09000 * 109.47522 * 60.00058 * 25 23 2 46 46 H 1.09006 * 109.47088 * 180.02562 * 25 23 2 47 47 H 1.08996 * 109.47408 * 299.99719 * 25 23 2 48 48 H 1.08998 * 109.47235 * 60.00293 * 26 23 2 49 49 H 1.09006 * 109.46671 * 180.02562 * 26 23 2 50 50 H 1.09000 * 109.47328 * 299.99728 * 26 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 1.6524 0.0355 -2.4424 6 6 2.0080 -0.4296 -3.7104 7 6 2.7290 -1.6104 -3.8415 8 6 3.0800 -2.0704 -5.0956 9 6 2.7111 -1.3612 -6.2232 10 6 1.9956 -0.1787 -6.0981 11 8 1.6378 0.5198 -7.2075 12 6 2.0366 -0.0184 -8.4698 13 6 1.5480 0.8989 -9.5926 14 6 1.9681 0.3310 -10.9238 15 1 2.5272 -0.5920 -10.9649 16 6 1.6376 0.9893 -12.0894 17 7 0.9563 2.1131 -12.0393 18 14 2.1589 0.2858 -13.7394 19 1 1.5673 -1.0655 -13.9105 20 1 1.6836 1.1753 -14.8293 21 1 3.6398 0.1878 -13.7902 22 6 1.6413 0.2865 -4.8414 23 6 2.0401 -0.7212 1.2492 24 6 3.5701 -0.7206 1.2494 25 6 1.5301 -0.0001 2.4984 26 6 1.5301 -2.1638 1.2491 27 1 -0.3632 -1.0278 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.6054 -1.7197 -1.2953 31 1 3.1263 -0.7992 -1.2057 32 1 1.1481 0.8592 -2.3517 33 1 3.0152 -2.1685 -2.9623 34 1 3.6401 -2.9885 -5.1956 35 1 2.9833 -1.7258 -7.2025 36 1 3.1236 -0.0904 -8.5070 37 1 1.6023 -1.0102 -8.5955 38 1 0.4610 0.9712 -9.5556 39 1 1.9826 1.8905 -9.4668 40 1 0.7235 2.5760 -12.8593 41 1 1.0806 1.2043 -4.7424 42 1 3.9330 0.3072 1.2497 43 1 3.9334 -1.2341 2.1396 44 1 3.9338 -1.2342 0.3594 45 1 0.4401 -0.0001 2.4985 46 1 1.8939 -0.5137 3.3884 47 1 1.8933 1.0276 2.4985 48 1 1.8935 -2.6775 0.3591 49 1 1.8932 -2.6775 2.1393 50 1 0.4401 -2.1638 1.2492 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000312764571.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:13 Heat of formation + Delta-G solvation = -45.002330 kcal Electronic energy + Delta-G solvation = -24372.326798 eV Core-core repulsion = 20977.514865 eV Total energy + Delta-G solvation = -3394.811933 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.91567 -39.24152 -37.45801 -34.87348 -33.31214 -31.59160 -30.75855 -29.51201 -28.65084 -27.83791 -27.65743 -25.74707 -24.84656 -22.92250 -22.43660 -21.27128 -20.27328 -18.71386 -17.86883 -16.40567 -16.29365 -15.80232 -15.55350 -15.31664 -15.16601 -14.95077 -14.68643 -14.49106 -14.35432 -13.77934 -13.57155 -13.32246 -12.96639 -12.61567 -12.51805 -12.36362 -12.31792 -12.28623 -12.13005 -11.95243 -11.57172 -11.51117 -11.38290 -11.19204 -10.90564 -10.81040 -10.76357 -10.73559 -10.65166 -10.39532 -9.92020 -9.66152 -9.60833 -9.26982 -8.41593 -7.89330 -7.26941 -6.06988 -4.11381 1.76429 1.92612 3.28309 3.31087 3.35358 3.37749 4.04702 4.17114 4.27548 4.31011 4.37058 4.45703 4.72249 4.87013 4.96544 5.09448 5.13543 5.23952 5.26522 5.29208 5.31154 5.38613 5.41342 5.48491 5.52898 5.54843 5.57695 5.59379 5.63165 5.66128 5.71558 5.76818 5.82877 5.90857 6.01698 6.10556 6.12022 6.13605 6.17491 6.46263 6.66786 6.71703 6.80367 6.94012 7.44098 7.55929 7.68986 7.72626 7.87366 8.16113 8.28577 8.94077 9.52552 11.04572 Molecular weight = 305.21amu Principal moments of inertia in cm(-1) A = 0.039974 B = 0.001986 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.284728 B =14098.412491 C =14505.309747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.092 4.092 3 H 0.075 0.925 4 C 0.129 3.871 5 N -0.748 5.748 6 C 0.248 3.752 7 C -0.245 4.245 8 C -0.037 4.037 9 C -0.265 4.265 10 C 0.188 3.812 11 O -0.317 6.317 12 C 0.066 3.934 13 C 0.025 3.975 14 C -0.526 4.526 15 H 0.058 0.942 16 C 0.060 3.940 17 N -0.890 5.890 18 Si 0.899 3.101 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.276 1.276 22 C -0.239 4.239 23 C -0.061 4.061 24 C -0.147 4.147 25 C -0.143 4.143 26 C -0.148 4.148 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.397 0.603 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.126 0.874 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.027 0.973 39 H 0.027 0.973 40 H 0.263 0.737 41 H 0.123 0.877 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.054 0.946 47 H 0.054 0.946 48 H 0.058 0.942 49 H 0.054 0.946 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.153 -6.932 29.637 30.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.111 4.111 3 H 0.094 0.906 4 C 0.005 3.995 5 N -0.379 5.379 6 C 0.145 3.855 7 C -0.267 4.267 8 C -0.056 4.056 9 C -0.286 4.286 10 C 0.140 3.860 11 O -0.229 6.229 12 C -0.008 4.008 13 C -0.012 4.012 14 C -0.564 4.564 15 H 0.076 0.924 16 C -0.142 4.142 17 N -0.528 5.528 18 Si 0.727 3.273 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.263 4.263 23 C -0.061 4.061 24 C -0.204 4.204 25 C -0.200 4.200 26 C -0.205 4.205 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.232 0.768 33 H 0.132 0.868 34 H 0.136 0.864 35 H 0.144 0.856 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.073 0.927 41 H 0.141 0.859 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.077 0.923 49 H 0.073 0.927 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.032 -6.732 29.635 30.458 hybrid contribution 0.198 -0.188 -1.019 1.055 sum 2.230 -6.920 28.616 29.525 Atomic orbital electron populations 1.21966 0.94725 1.02409 1.01846 1.21362 0.96376 0.99820 0.93521 0.90629 1.21484 0.99319 0.95185 0.83550 1.44600 1.62789 1.28198 1.02290 1.17353 0.91836 0.91988 0.84356 1.20367 1.09743 0.98993 0.97605 1.20614 0.95711 0.97722 0.91541 1.21137 1.09109 0.98522 0.99809 1.18820 0.90491 0.89570 0.87159 1.86142 1.73369 1.49473 1.13951 1.23306 0.98706 0.98821 0.79928 1.19122 0.97711 0.94838 0.89550 1.20946 1.36270 1.08822 0.90368 0.92400 1.24994 0.94970 0.94875 0.99397 1.69972 1.38384 1.16195 1.28265 0.86542 0.79005 0.78917 0.82870 1.20112 1.21147 1.20104 1.19662 1.13094 1.04444 0.89064 1.20478 0.95581 0.95621 0.94429 1.21977 0.94463 1.02001 1.01995 1.21924 1.01270 1.00134 0.96692 1.22010 1.01369 0.95218 1.01907 0.92116 0.92249 0.92513 0.92197 0.92110 0.76818 0.86829 0.86435 0.85632 0.93114 0.93110 0.95446 0.95440 0.92696 0.85865 0.92579 0.92608 0.92135 0.92248 0.92663 0.92684 0.92259 0.92723 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 8.36 37.16 0.31 -0.66 16 2 C -0.09 -0.59 1.79 -90.62 -0.16 -0.75 16 3 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 4 C 0.13 1.05 3.58 -4.04 -0.01 1.04 16 5 N -0.75 -7.78 5.46 -58.65 -0.32 -8.10 16 6 C 0.25 3.39 6.65 -83.81 -0.56 2.83 16 7 C -0.24 -3.24 9.31 -39.35 -0.37 -3.61 16 8 C -0.04 -0.52 10.03 -39.63 -0.40 -0.92 16 9 C -0.27 -4.44 9.04 -39.39 -0.36 -4.80 16 10 C 0.19 3.47 6.68 -39.24 -0.26 3.21 16 11 O -0.32 -6.82 10.13 -19.42 -0.20 -7.02 16 12 C 0.07 1.48 4.68 37.16 0.17 1.65 16 13 C 0.02 0.67 5.34 -27.89 -0.15 0.52 16 14 C -0.53 -14.90 9.11 -34.44 -0.31 -15.21 16 15 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 18 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 22 C -0.24 -3.87 9.83 -39.24 -0.39 -4.25 16 23 C -0.06 -0.34 0.57 -154.51 -0.09 -0.43 16 24 C -0.15 -0.85 8.13 37.16 0.30 -0.54 16 25 C -0.14 -0.74 8.12 37.16 0.30 -0.44 16 26 C -0.15 -0.83 7.77 37.16 0.29 -0.54 16 27 H 0.06 0.40 6.43 -51.92 -0.33 0.07 16 28 H 0.06 0.34 6.43 -51.93 -0.33 0.00 16 29 H 0.06 0.40 7.18 -51.93 -0.37 0.03 16 30 H 0.06 0.51 6.51 -51.93 -0.34 0.17 16 31 H 0.06 0.51 5.98 -51.93 -0.31 0.20 16 32 H 0.40 3.72 7.66 -40.82 -0.31 3.41 16 33 H 0.11 1.26 6.73 -52.49 -0.35 0.91 16 34 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 35 H 0.13 2.08 6.29 -52.49 -0.33 1.75 16 36 H 0.05 1.08 7.67 -51.93 -0.40 0.68 16 37 H 0.05 1.08 7.65 -51.93 -0.40 0.68 16 38 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.12 1.89 8.06 -52.48 -0.42 1.47 16 42 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.06 0.37 6.32 -51.93 -0.33 0.04 16 45 H 0.06 0.30 6.43 -51.93 -0.33 -0.03 16 46 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 48 H 0.06 0.35 6.54 -51.93 -0.34 0.01 16 49 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 50 H 0.06 0.33 6.43 -51.93 -0.33 0.00 16 LS Contribution 385.75 15.07 5.81 5.81 Total: -1.00 -30.56 385.75 -9.35 -39.91 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -8.59 Total: 0.24 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: -1.77 Total: -21.29 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: 0.42 Total: -34.14 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -0.20 Total: -7.02 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.56 -9.35 -39.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000312764571.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.097 kcal (2) G-P(sol) polarization free energy of solvation -30.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds