Wall clock time and date at job start Tue Mar 31 2020 09:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99909 * 2 1 4 4 H 1.48502 * 109.46851 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46982 * 299.99627 * 3 2 1 6 6 H 1.48493 * 109.47509 * 59.99752 * 3 2 1 7 7 C 1.37874 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00092 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00357 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47245 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99751 * 179.97438 * 10 9 7 12 12 O 1.21593 * 119.99979 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99976 * 180.02562 * 11 10 9 14 14 C 1.40126 * 120.00082 * 185.64032 * 13 11 10 15 15 C 1.38785 * 120.05883 * 24.76464 * 14 13 11 16 16 C 1.38248 * 119.95780 * 179.97438 * 15 14 13 17 17 Cl 1.73601 * 119.96336 * 179.97438 * 16 15 14 18 18 C 1.38487 * 120.07153 * 359.97325 * 16 15 14 19 19 Cl 1.73594 * 119.94259 * 180.02562 * 18 16 15 20 20 C 1.38351 * 120.11468 * 0.04734 * 18 16 15 21 21 C 1.38307 * 120.04867 * 359.97438 * 20 18 16 22 22 F 1.35098 * 120.03954 * 180.02562 * 21 20 18 23 23 H 0.97003 * 120.00358 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47059 * 59.99611 * 9 7 2 25 25 H 1.09001 * 109.46916 * 300.00023 * 9 7 2 26 26 H 0.96992 * 120.00179 * 0.02562 * 10 9 7 27 27 H 0.97003 * 119.99941 * 5.63300 * 13 11 10 28 28 H 1.08009 * 120.02109 * 0.25056 * 15 14 13 29 29 H 1.08006 * 119.97659 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8833 0.0011 12 8 0.5583 -5.1055 0.0011 13 7 2.6295 -5.9077 0.0016 14 6 2.1669 -7.2251 -0.1171 15 6 0.9487 -7.4815 -0.7306 16 6 0.4946 -8.7820 -0.8471 17 17 -1.0295 -9.1028 -1.6139 18 6 1.2541 -9.8292 -0.3528 19 17 0.6810 -11.4610 -0.5015 20 6 2.4688 -9.5770 0.2597 21 6 2.9276 -8.2777 0.3792 22 9 4.1139 -8.0317 0.9769 23 1 -0.4851 0.8400 -0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8903 26 1 3.1566 -3.4354 0.0009 27 1 3.5801 -5.7331 0.0840 28 1 0.3579 -6.6658 -1.1208 29 1 3.0592 -10.3953 0.6448 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334801448.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:15:01 Heat of formation + Delta-G solvation = -62.237835 kcal Electronic energy + Delta-G solvation = -19557.034077 eV Core-core repulsion = 15867.532478 eV Total energy + Delta-G solvation = -3689.501599 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 306.008 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.20865 -40.50615 -38.82683 -36.77468 -36.65465 -34.75889 -34.33395 -32.49932 -30.82933 -29.57629 -27.13849 -24.01052 -23.13534 -22.26458 -20.59398 -18.80171 -18.23398 -17.60982 -16.77496 -16.18593 -15.91159 -15.85800 -15.09003 -14.94565 -14.39559 -14.24381 -13.96573 -13.88660 -13.26958 -13.13959 -12.43759 -12.15394 -12.10635 -12.03901 -11.54820 -11.35754 -11.06977 -11.02318 -10.98720 -10.40151 -10.29812 -9.70989 -9.48085 -9.01927 -8.87251 -8.33902 -7.95088 -6.25306 -4.32947 0.56120 0.75165 1.62306 1.94977 2.74641 2.96091 3.18771 3.26489 3.29113 3.59269 3.84410 4.23543 4.30160 4.59368 4.80490 4.90940 5.11457 5.19233 5.33835 5.59960 5.89702 6.02478 6.59473 6.73294 7.18904 7.33880 7.39151 7.64131 7.86560 8.48505 8.67728 8.93389 9.33837 10.84708 Molecular weight = 306.01amu Principal moments of inertia in cm(-1) A = 0.026808 B = 0.003089 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.198957 B = 9061.185223 C =10019.286411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.264 3.736 10 N -0.714 5.714 11 C 0.690 3.310 12 O -0.575 6.575 13 N -0.685 5.685 14 C 0.178 3.822 15 C -0.091 4.091 16 C -0.014 4.014 17 Cl -0.039 7.039 18 C -0.038 4.038 19 Cl -0.046 7.046 20 C -0.110 4.110 21 C 0.070 3.930 22 F -0.128 7.128 23 H 0.267 0.733 24 H 0.030 0.970 25 H 0.030 0.970 26 H 0.391 0.609 27 H 0.411 0.589 28 H 0.181 0.819 29 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.817 -19.994 -1.332 20.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.585 4.585 8 H 0.083 0.917 9 C 0.144 3.856 10 N -0.365 5.365 11 C 0.390 3.610 12 O -0.453 6.453 13 N -0.332 5.332 14 C 0.078 3.922 15 C -0.113 4.113 16 C -0.042 4.042 17 Cl -0.010 7.010 18 C -0.067 4.067 19 Cl -0.017 7.017 20 C -0.130 4.130 21 C 0.047 3.953 22 F -0.107 7.107 23 H 0.076 0.924 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.224 0.776 27 H 0.247 0.753 28 H 0.198 0.802 29 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 4.397 -20.015 -1.398 20.540 hybrid contribution 1.420 0.974 0.173 1.730 sum 5.816 -19.041 -1.225 19.947 Atomic orbital electron populations 1.69975 1.06102 1.27395 1.48550 1.24940 0.94941 0.99493 0.94556 0.86328 0.79776 0.82783 0.77824 1.19626 1.20729 1.20742 1.21217 0.93365 0.90208 1.53669 0.91744 1.19145 0.87652 0.80742 0.98105 1.45844 1.11497 1.03900 1.75241 1.16141 0.84946 0.81061 0.78810 1.90870 1.13684 1.83398 1.57309 1.42831 1.10893 1.02994 1.76476 1.17444 0.94486 0.83522 0.96736 1.21365 0.95781 0.95996 0.98153 1.20584 0.90087 0.92897 1.00674 1.98398 1.27783 1.95615 1.79167 1.20280 0.95497 0.86235 1.04728 1.98383 1.88540 1.18144 1.96620 1.20623 0.95496 0.95711 1.01169 1.17083 0.84697 0.92427 1.01102 1.91513 1.43019 1.94865 1.81263 0.92357 0.95181 0.95233 0.77593 0.75256 0.80178 0.82616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.17 13.29 55.43 0.74 -24.44 15 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 15 3 Si 0.91 20.21 29.54 -169.99 -5.02 15.18 15 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 15 5 H -0.28 -6.26 7.11 56.52 0.40 -5.85 15 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 7 C -0.55 -14.16 9.28 -34.44 -0.32 -14.48 15 8 H 0.06 1.56 7.60 -52.49 -0.40 1.16 15 9 C 0.26 6.61 5.43 -5.19 -0.03 6.58 15 10 N -0.71 -13.92 5.55 -66.41 -0.37 -14.29 15 11 C 0.69 12.87 8.37 -86.92 -0.73 12.15 15 12 O -0.57 -12.70 13.51 5.28 0.07 -12.63 15 13 N -0.69 -9.67 5.32 -14.16 -0.08 -9.75 15 14 C 0.18 2.43 6.44 -83.57 -0.54 1.90 15 15 C -0.09 -1.32 8.49 -39.38 -0.33 -1.66 15 16 C -0.01 -0.18 6.32 -39.49 -0.25 -0.43 15 17 Cl -0.04 -0.48 27.95 -51.86 -1.45 -1.93 15 18 C -0.04 -0.43 6.32 -39.45 -0.25 -0.68 15 19 Cl -0.05 -0.46 27.95 -51.86 -1.45 -1.91 15 20 C -0.11 -1.11 9.80 -39.51 -0.39 -1.50 15 21 C 0.07 0.81 7.31 -39.26 -0.29 0.52 15 22 F -0.13 -1.43 16.81 2.25 0.04 -1.39 15 23 H 0.27 7.12 8.31 -40.82 -0.34 6.79 15 24 H 0.03 0.83 8.14 -51.93 -0.42 0.41 15 25 H 0.03 0.82 8.14 -51.93 -0.42 0.40 15 26 H 0.39 6.40 8.34 -40.82 -0.34 6.06 15 27 H 0.41 4.54 8.47 -40.82 -0.35 4.20 15 28 H 0.18 3.03 5.80 -52.48 -0.30 2.73 15 29 H 0.16 1.18 8.06 -52.48 -0.42 0.75 15 LS Contribution 297.30 15.07 4.48 4.48 Total: -1.00 -29.27 297.30 -8.05 -37.31 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -1.79 Total: 5.30 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: -3.22 Total: 4.05 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: 0.29 Total: -48.47 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.07 Total: -12.63 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -2.90 Total: -3.84 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.27 -8.05 -37.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334801448.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.925 kcal (2) G-P(sol) polarization free energy of solvation -29.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds