Wall clock time and date at job start Tue Mar 31 2020 09:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00010 * 2 1 4 4 H 1.48496 * 109.46991 * 240.00310 * 3 2 1 5 5 H 1.48500 * 109.47072 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47061 * 119.99925 * 3 2 1 7 7 C 1.37875 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00015 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99954 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.46938 * 179.97438 * 9 7 2 11 11 C 1.31180 * 119.99608 * 114.01511 * 10 9 7 12 12 C 1.46328 * 119.75900 * 353.18183 * 11 10 9 13 13 C 1.35096 * 119.67887 * 180.02562 * 12 11 10 14 14 C 1.46653 * 119.18448 * 0.02562 * 13 12 11 15 15 C 1.39926 * 120.44777 * 179.97438 * 14 13 12 16 16 C 1.37724 * 119.75066 * 179.78822 * 15 14 13 17 17 Br 1.89100 * 119.81937 * 180.24836 * 16 15 14 18 18 C 1.38821 * 120.36261 * 0.48460 * 16 15 14 19 19 C 1.37844 * 120.56643 * 359.48510 * 18 16 15 20 20 C 1.39098 * 120.01344 * 0.27935 * 19 18 16 21 21 N 1.37436 * 119.74800 * 173.19971 * 11 10 9 22 22 H 0.96995 * 119.65637 * 0.02562 * 21 11 10 23 23 H 0.97009 * 119.99810 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47194 * 60.00208 * 9 7 2 25 25 H 1.08996 * 109.46954 * 299.99555 * 9 7 2 26 26 H 1.08005 * 120.16045 * 0.02562 * 12 11 10 27 27 H 1.08000 * 120.41034 * 180.02562 * 13 12 11 28 28 H 1.07998 * 120.12639 * 0.03907 * 15 14 13 29 29 H 1.07997 * 119.71495 * 179.76597 * 18 16 15 30 30 H 1.08007 * 119.98985 * 180.25630 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.2778 -4.4116 1.0383 12 6 1.5189 -4.1009 2.2502 13 6 1.5975 -4.9245 3.3182 14 6 2.4462 -6.1180 3.2400 15 6 2.5474 -6.9888 4.3305 16 6 3.3453 -8.1077 4.2399 17 35 3.4780 -9.2896 5.7100 18 6 4.0564 -8.3701 3.0769 19 6 3.9666 -7.5220 1.9939 20 6 3.1629 -6.3889 2.0623 21 7 3.0686 -5.5341 0.9792 22 1 3.5669 -5.7280 0.1699 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 0.8990 -3.2174 2.2908 27 1 1.0422 -4.7068 4.2185 28 1 1.9988 -6.7865 5.2385 29 1 4.6819 -9.2486 3.0185 30 1 4.5208 -7.7374 1.0922 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335620177.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:49 Heat of formation + Delta-G solvation = 66.531232 kcal Electronic energy + Delta-G solvation = -16009.865927 eV Core-core repulsion = 13237.413642 eV Total energy + Delta-G solvation = -2772.452285 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 306.006 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.35592 -37.35252 -34.44710 -33.55032 -32.49553 -31.32117 -29.84023 -28.54257 -26.55430 -23.54050 -23.11227 -22.77206 -20.89502 -18.04231 -17.77436 -16.35152 -16.21307 -15.42126 -14.92887 -14.51796 -14.36141 -14.14628 -13.99847 -13.07276 -12.84698 -12.60918 -12.24998 -11.82209 -11.43675 -11.20261 -11.06765 -10.78236 -10.72834 -10.45857 -10.37496 -10.17322 -9.78463 -8.99478 -8.69788 -8.51815 -8.15748 -6.94277 -6.10752 -4.16391 0.73350 1.08771 1.58611 2.10204 3.18084 3.22421 3.28228 3.31973 3.36754 4.06562 4.38522 4.52938 4.62167 4.98409 5.00351 5.11937 5.20417 5.24734 5.70001 5.75299 5.77937 5.81227 6.05923 6.25046 6.51546 6.55781 6.65217 7.05262 7.34379 7.45355 7.68597 7.83714 8.18106 8.77310 8.98770 9.48955 10.96626 Molecular weight = 306.01amu Principal moments of inertia in cm(-1) A = 0.040724 B = 0.002844 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.398175 B = 9844.212993 C =10109.209512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.902 3.098 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.513 4.513 8 H 0.060 0.940 9 C 0.187 3.813 10 N -0.548 5.548 11 C 0.347 3.653 12 C -0.132 4.132 13 C -0.094 4.094 14 C -0.115 4.115 15 C -0.032 4.032 16 C -0.141 4.141 17 Br -0.064 7.064 18 C -0.045 4.045 19 C -0.177 4.177 20 C 0.230 3.770 21 N -0.623 5.623 22 H 0.415 0.585 23 H 0.265 0.735 24 H 0.046 0.954 25 H 0.012 0.988 26 H 0.158 0.842 27 H 0.134 0.866 28 H 0.136 0.864 29 H 0.133 0.867 30 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.196 -20.081 11.758 24.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.730 3.270 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.552 4.552 8 H 0.078 0.922 9 C 0.060 3.940 10 N -0.267 5.267 11 C 0.072 3.928 12 C -0.153 4.153 13 C -0.117 4.117 14 C -0.120 4.120 15 C -0.053 4.053 16 C -0.223 4.223 17 Br 0.021 6.979 18 C -0.066 4.066 19 C -0.200 4.200 20 C 0.123 3.877 21 N -0.243 5.243 22 H 0.252 0.748 23 H 0.074 0.926 24 H 0.063 0.937 25 H 0.030 0.970 26 H 0.176 0.824 27 H 0.151 0.849 28 H 0.154 0.846 29 H 0.151 0.849 30 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.295 -19.982 11.358 23.831 hybrid contribution 0.163 1.337 -0.010 1.347 sum 6.458 -18.645 11.349 22.763 Atomic orbital electron populations 1.69936 1.06006 1.27224 1.50329 1.24987 0.94965 0.99355 0.95063 0.86488 0.79450 0.82321 0.78790 1.20073 1.21098 1.20156 1.21074 0.93450 0.89525 1.51162 0.92174 1.19890 0.89999 0.86779 0.97325 1.72125 1.22105 1.07824 1.24690 1.19825 0.92096 0.88388 0.92509 1.23108 0.99352 1.00698 0.92188 1.22021 0.97946 0.92739 0.99025 1.18506 1.02298 0.98142 0.93087 1.20989 0.95469 0.91237 0.97591 1.21343 1.07492 0.98777 0.94653 1.96652 1.98132 1.61610 1.41501 1.20809 0.96546 0.98504 0.90741 1.20557 1.03652 0.95390 1.00441 1.17938 0.93262 0.89555 0.86976 1.41405 1.46598 1.21339 1.14991 0.74799 0.92588 0.93657 0.97045 0.82439 0.84858 0.84569 0.84935 0.84669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.15 13.29 55.43 0.74 -25.41 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.51 -14.73 9.39 -34.44 -0.32 -15.06 16 8 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 9 C 0.19 4.97 5.93 -5.19 -0.03 4.94 16 10 N -0.55 -12.81 10.63 -60.11 -0.64 -13.44 16 11 C 0.35 6.78 7.78 -154.64 -1.20 5.58 16 12 C -0.13 -2.37 9.29 -37.45 -0.35 -2.72 16 13 C -0.09 -1.36 10.02 -37.30 -0.37 -1.73 16 14 C -0.11 -1.56 5.87 -105.02 -0.62 -2.18 16 15 C -0.03 -0.37 9.53 -39.14 -0.37 -0.74 16 16 C -0.14 -1.53 6.22 -39.55 -0.25 -1.78 16 17 Br -0.06 -0.61 33.68 -68.01 -2.29 -2.90 16 18 C -0.05 -0.46 9.75 -39.51 -0.39 -0.84 16 19 C -0.18 -1.90 9.88 -39.41 -0.39 -2.29 16 20 C 0.23 3.12 6.65 -83.78 -0.56 2.57 16 21 N -0.62 -9.67 5.44 -8.65 -0.05 -9.71 16 22 H 0.41 5.67 8.79 -40.82 -0.36 5.31 16 23 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 24 H 0.05 1.30 8.14 -51.93 -0.42 0.87 16 25 H 0.01 0.31 5.20 -51.93 -0.27 0.04 16 26 H 0.16 3.06 5.85 -52.48 -0.31 2.76 16 27 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 28 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 29 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 30 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 LS Contribution 286.00 15.07 4.31 4.31 Total: -1.00 -30.74 286.00 -10.49 -41.23 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -2.59 Total: 2.04 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -4.94 Total: -12.71 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: 0.05 Total: -48.57 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 35 Polarization: -0.61 SS G_CDS: -2.29 Total: -2.90 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.74 -10.49 -41.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335620177.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.765 kcal (2) G-P(sol) polarization free energy of solvation -30.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds