Wall clock time and date at job start Tue Mar 31 2020 08:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 109.47448 * 2 1 4 4 N 1.31785 * 119.08553 * 269.98421 * 3 2 1 5 5 C 1.32553 * 121.01352 * 179.97438 * 4 3 2 6 6 C 1.50697 * 120.40318 * 179.97438 * 5 4 3 7 7 C 1.38113 * 119.19595 * 359.97438 * 5 4 3 8 8 C 1.39624 * 118.33475 * 0.02562 * 7 5 4 9 9 N 1.38543 * 120.53093 * 180.25267 * 8 7 5 10 10 C 1.46500 * 120.00146 * 4.72054 * 9 8 7 11 11 C 1.50702 * 109.47250 * 84.78488 * 10 9 8 12 12 H 1.07997 * 120.00167 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99815 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00031 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99918 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46952 * 60.00139 * 15 13 11 17 17 H 1.48498 * 109.47054 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.46922 * 300.00474 * 15 13 11 19 19 C 1.46502 * 119.99971 * 184.72068 * 9 8 7 20 20 C 1.52999 * 109.47367 * 92.81804 * 19 9 8 21 21 C 1.53002 * 109.46893 * 295.59623 * 20 19 9 22 22 C 1.52998 * 109.47291 * 293.68739 * 21 20 19 23 23 C 1.53001 * 109.47134 * 55.59440 * 20 19 9 24 24 C 1.53002 * 109.47176 * 65.00239 * 23 20 19 25 25 N 1.31747 * 119.08336 * 90.00171 * 3 2 1 26 26 H 1.08997 * 109.47813 * 59.99334 * 1 2 3 27 27 H 1.08994 * 109.47273 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46923 * 300.00054 * 1 2 3 29 29 H 1.09004 * 109.47223 * 240.00384 * 2 1 3 30 30 H 1.09000 * 109.47280 * 120.00148 * 2 1 3 31 31 H 1.09000 * 109.46916 * 90.00054 * 6 5 4 32 32 H 1.08997 * 109.47462 * 210.00105 * 6 5 4 33 33 H 1.09003 * 109.47302 * 330.00552 * 6 5 4 34 34 H 1.08006 * 120.83360 * 180.02562 * 7 5 4 35 35 H 1.09004 * 109.47028 * 204.78540 * 10 9 8 36 36 H 1.09000 * 109.47193 * 324.78317 * 10 9 8 37 37 H 0.97006 * 119.99968 * 179.97438 * 14 13 11 38 38 H 1.09006 * 109.46984 * 212.81701 * 19 9 8 39 39 H 1.09002 * 109.47286 * 332.81295 * 19 9 8 40 40 H 1.08999 * 109.47119 * 175.59712 * 20 19 9 41 41 H 1.09004 * 109.46959 * 53.68720 * 21 20 19 42 42 H 1.08994 * 109.47122 * 173.67921 * 21 20 19 43 43 H 1.09003 * 109.46539 * 302.24939 * 22 21 20 44 44 H 1.08994 * 109.47086 * 62.24462 * 22 21 20 45 45 H 1.08994 * 109.46951 * 182.24910 * 22 21 20 46 46 H 1.08998 * 109.47292 * 185.00073 * 23 20 19 47 47 H 1.09004 * 109.47236 * 305.00626 * 23 20 19 48 48 H 1.09002 * 109.47056 * 59.99654 * 24 23 20 49 49 H 1.08996 * 109.47302 * 180.02562 * 24 23 20 50 50 H 1.08998 * 109.46875 * 300.00089 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2462 2.0246 -1.1517 5 6 2.6874 3.2738 -1.1963 6 6 2.9279 3.9509 -2.5209 7 6 2.9241 3.9473 -0.0139 8 6 2.6873 3.2785 1.1886 9 7 2.9044 3.9125 2.4012 10 6 3.2865 5.3265 2.4304 11 6 2.0483 6.1829 2.3635 12 1 1.0742 5.7203 2.3055 13 6 2.1591 7.5572 2.3764 14 7 3.3454 8.1206 2.4465 15 14 0.6244 8.6188 2.2928 16 1 -0.2492 8.3185 3.4555 17 1 1.0117 10.0521 2.3226 18 1 -0.1095 8.3298 1.0347 19 6 2.7520 3.1689 3.6542 20 6 4.1062 2.5937 4.0740 21 6 4.5698 1.5707 3.0351 22 6 3.6278 0.3652 3.0506 23 6 5.1327 3.7242 4.1700 24 6 4.7334 4.6815 5.2948 25 7 2.2459 2.0245 1.1514 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.0168 4.4563 -2.8412 32 1 3.7305 4.6808 -2.4156 33 1 3.2101 3.2052 -3.2642 34 1 3.2834 4.9659 -0.0194 35 1 3.8253 5.5383 3.3540 36 1 3.9276 5.5474 1.5769 37 1 3.4234 9.0875 2.4552 38 1 2.3849 3.8388 4.4319 39 1 2.0407 2.3556 3.5099 40 1 4.0092 2.1075 5.0447 41 1 4.5592 2.0275 2.0454 42 1 5.5820 1.2440 3.2734 43 1 3.6079 -0.0674 4.0509 44 1 2.6235 0.6853 2.7732 45 1 3.9809 -0.3810 2.3389 46 1 6.1162 3.3048 4.3820 47 1 5.1650 4.2670 3.2253 48 1 4.7011 4.1387 6.2395 49 1 5.4645 5.4871 5.3629 50 1 3.7499 5.1009 5.0829 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342803166.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:15 Heat of formation + Delta-G solvation = 28.198406 kcal Electronic energy + Delta-G solvation = -27190.981754 eV Core-core repulsion = 23831.636795 eV Total energy + Delta-G solvation = -3359.344959 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.46078 -38.14048 -34.99037 -34.20423 -33.19225 -32.01341 -31.55483 -30.13354 -28.45797 -27.60933 -26.18624 -24.67448 -24.46519 -23.03969 -21.48721 -20.99716 -20.40129 -19.07240 -16.80605 -16.77294 -16.26146 -15.35289 -14.80965 -14.72813 -14.42780 -14.27555 -13.87723 -13.79100 -13.56316 -13.28283 -12.89578 -12.83785 -12.60287 -12.47752 -12.24697 -12.06324 -11.89065 -11.81020 -11.47695 -11.26622 -11.17164 -11.13214 -10.99422 -10.87060 -10.69523 -10.49066 -10.42331 -10.21701 -10.16360 -9.89496 -9.85266 -9.67841 -9.49474 -8.80829 -8.55808 -8.40641 -6.98563 -6.16042 -4.24908 1.76710 2.14518 3.23136 3.27979 3.31253 3.75690 4.32471 4.47685 4.54827 4.82271 5.14696 5.18427 5.26584 5.32229 5.35693 5.45371 5.53219 5.56064 5.70760 5.78824 5.85432 5.90092 5.90580 5.94412 5.97009 5.98939 6.03625 6.08583 6.14473 6.23224 6.28412 6.30780 6.35554 6.38633 6.42075 6.43231 6.50572 6.57605 6.62570 6.79482 6.83501 6.90792 6.99795 7.16620 7.21477 7.56783 7.77348 8.06475 8.23533 8.27708 8.80510 9.03566 9.41969 10.87660 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.010603 B = 0.006334 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2640.168582 B = 4419.851122 C = 5963.634988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.049 4.049 3 C 0.350 3.650 4 N -0.579 5.579 5 C 0.184 3.816 6 C -0.098 4.098 7 C -0.281 4.281 8 C 0.452 3.548 9 N -0.566 5.566 10 C 0.238 3.762 11 C -0.535 4.535 12 H 0.057 0.943 13 C 0.066 3.934 14 N -0.892 5.892 15 Si 0.894 3.106 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.276 1.276 19 C 0.127 3.873 20 C -0.101 4.101 21 C -0.107 4.107 22 C -0.155 4.155 23 C -0.122 4.122 24 C -0.154 4.154 25 N -0.582 5.582 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.145 0.855 35 H 0.061 0.939 36 H 0.031 0.969 37 H 0.265 0.735 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.044 0.956 43 H 0.037 0.963 44 H 0.090 0.910 45 H 0.038 0.962 46 H 0.048 0.952 47 H 0.074 0.926 48 H 0.043 0.957 49 H 0.050 0.950 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.823 -11.998 -1.173 12.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.088 4.088 3 C 0.079 3.921 4 N -0.302 5.302 5 C 0.044 3.956 6 C -0.155 4.155 7 C -0.309 4.309 8 C 0.208 3.792 9 N -0.274 5.274 10 C 0.119 3.881 11 C -0.574 4.574 12 H 0.076 0.924 13 C -0.137 4.137 14 N -0.530 5.530 15 Si 0.722 3.278 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.202 1.202 19 C 0.003 3.997 20 C -0.121 4.121 21 C -0.144 4.144 22 C -0.212 4.212 23 C -0.160 4.160 24 C -0.211 4.211 25 N -0.308 5.308 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.163 0.837 35 H 0.078 0.922 36 H 0.049 0.951 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.109 0.891 45 H 0.057 0.943 46 H 0.067 0.933 47 H 0.093 0.907 48 H 0.062 0.938 49 H 0.070 0.930 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.670 -12.524 -0.956 12.578 hybrid contribution -0.437 1.774 0.050 1.828 sum 0.233 -10.750 -0.906 10.790 Atomic orbital electron populations 1.21643 0.94302 1.01529 1.02372 1.20217 0.96209 0.89277 1.03139 1.22519 0.90351 0.95979 0.83240 1.67924 1.21417 1.10850 1.29994 1.21148 0.90017 0.89427 0.95040 1.20636 1.02439 0.99770 0.92702 1.22096 1.12868 1.03879 0.92080 1.18514 0.86164 0.87440 0.87090 1.47043 1.67815 1.11480 1.01018 1.19725 0.96017 0.72971 0.99357 1.21485 0.93259 0.91009 1.51611 0.92441 1.24894 0.96137 0.97762 0.94862 1.69906 1.22291 1.11016 1.49793 0.86608 0.83182 0.79199 0.78804 1.20211 1.21119 1.20198 1.21439 0.96064 0.96103 0.86129 1.21628 0.96306 0.95750 0.98371 1.21396 0.97772 0.95833 0.99438 1.21971 1.02757 0.96934 0.99537 1.21663 0.97377 0.96593 1.00333 1.21871 1.02861 0.98920 0.97419 1.67699 1.22961 1.10012 1.30152 0.92562 0.92263 0.92433 0.90107 0.89899 0.90543 0.90743 0.90923 0.83729 0.92166 0.95089 0.92511 0.90953 0.90154 0.91326 0.92367 0.93749 0.94365 0.89102 0.94292 0.93289 0.90723 0.93789 0.93042 0.91112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.89 37.15 0.37 -1.33 16 2 C -0.05 -0.65 6.37 -27.89 -0.18 -0.83 16 3 C 0.35 6.05 6.90 -157.24 -1.08 4.96 16 4 N -0.58 -10.53 10.27 -7.07 -0.07 -10.61 16 5 C 0.18 3.35 6.82 -82.33 -0.56 2.79 16 6 C -0.10 -1.41 10.21 36.00 0.37 -1.04 16 7 C -0.28 -5.68 9.00 -39.11 -0.35 -6.04 16 8 C 0.45 9.11 5.72 -154.78 -0.88 8.23 16 9 N -0.57 -11.40 2.06 -175.02 -0.36 -11.76 16 10 C 0.24 5.51 3.45 -5.19 -0.02 5.50 16 11 C -0.53 -13.88 9.36 -34.44 -0.32 -14.21 16 12 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 13 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 14 N -0.89 -24.29 13.29 55.43 0.74 -23.55 16 15 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 C 0.13 2.22 4.89 -4.04 -0.02 2.20 16 20 C -0.10 -1.55 2.20 -90.62 -0.20 -1.74 16 21 C -0.11 -1.64 4.89 -26.73 -0.13 -1.77 16 22 C -0.15 -2.16 9.07 37.16 0.34 -1.82 16 23 C -0.12 -1.96 4.86 -26.73 -0.13 -2.09 16 24 C -0.15 -2.45 8.76 37.16 0.33 -2.12 16 25 N -0.58 -10.65 5.59 -9.97 -0.06 -10.70 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.08 1.02 7.95 -51.93 -0.41 0.61 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 0.99 8.09 -51.93 -0.42 0.57 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.14 3.11 6.27 -52.48 -0.33 2.78 16 35 H 0.06 1.41 3.88 -51.93 -0.20 1.21 16 36 H 0.03 0.78 6.33 -51.93 -0.33 0.45 16 37 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16 38 H 0.07 1.31 6.73 -51.93 -0.35 0.96 16 39 H 0.08 1.39 5.73 -51.93 -0.30 1.10 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.06 1.05 5.84 -51.93 -0.30 0.74 16 42 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.09 1.38 4.31 -51.93 -0.22 1.15 16 45 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.07 1.39 5.54 -51.93 -0.29 1.10 16 48 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.07 1.28 5.26 -51.93 -0.27 1.01 16 LS Contribution 377.80 15.07 5.69 5.69 Total: -1.00 -27.25 377.80 -10.13 -37.37 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -8.47 Total: 5.45 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -2.58 Total: -7.66 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: 0.25 Total: -56.62 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -27.25 -10.13 -37.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342803166.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.571 kcal (2) G-P(sol) polarization free energy of solvation -27.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds