Wall clock time and date at job start Tue Mar 31 2020 08:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42904 * 109.47009 * 2 1 4 4 C 1.35898 * 116.99940 * 179.97438 * 3 2 1 5 5 C 1.38747 * 120.05546 * 0.02562 * 4 3 2 6 6 C 1.38125 * 119.94590 * 179.97438 * 5 4 3 7 7 C 1.38289 * 120.05159 * 359.97438 * 6 5 4 8 8 C 1.38243 * 120.11362 * 359.97438 * 7 6 5 9 9 C 1.38163 * 120.05442 * 0.02562 * 8 7 6 10 10 C 1.50706 * 120.02719 * 180.02562 * 9 8 7 11 11 H 1.08994 * 109.47190 * 144.97674 * 10 9 8 12 12 C 1.53007 * 109.46642 * 264.97496 * 10 9 8 13 13 N 1.46893 * 109.47268 * 24.97200 * 10 9 8 14 14 C 1.46899 * 110.99969 * 155.00525 * 13 10 9 15 15 C 1.53004 * 109.46900 * 180.02562 * 14 13 10 16 16 C 1.52995 * 109.47048 * 299.99443 * 15 14 13 17 17 C 1.52999 * 109.47520 * 59.99951 * 15 14 13 18 18 C 1.53003 * 109.46813 * 179.97438 * 15 14 13 19 19 C 1.50703 * 109.47200 * 179.97438 * 18 15 14 20 20 H 1.08006 * 119.99524 * 0.02562 * 19 18 15 21 21 C 1.37873 * 120.00098 * 179.97438 * 19 18 15 22 22 N 1.31519 * 119.99944 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 120.00258 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47344 * 89.99243 * 23 21 19 25 25 H 1.48497 * 109.47093 * 209.99482 * 23 21 19 26 26 H 1.48500 * 109.46692 * 329.99307 * 23 21 19 27 27 H 1.08998 * 109.47492 * 59.99955 * 1 2 3 28 28 H 1.09004 * 109.46901 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47276 * 299.99925 * 1 2 3 30 30 H 1.08999 * 109.47276 * 240.00075 * 2 1 3 31 31 H 1.08995 * 109.46990 * 120.00117 * 2 1 3 32 32 H 1.08000 * 120.03041 * 359.95195 * 5 4 3 33 33 H 1.07993 * 119.97844 * 179.72247 * 6 5 4 34 34 H 1.08004 * 119.94552 * 179.97438 * 7 6 5 35 35 H 1.08001 * 119.97523 * 179.97438 * 8 7 6 36 36 H 1.08994 * 109.47183 * 60.00173 * 12 10 9 37 37 H 1.08999 * 109.46673 * 180.02562 * 12 10 9 38 38 H 1.09002 * 109.46871 * 300.00084 * 12 10 9 39 39 H 1.00899 * 111.00431 * 31.05194 * 13 10 9 40 40 H 1.08996 * 109.46820 * 299.99605 * 14 13 10 41 41 H 1.08996 * 109.47249 * 60.00125 * 14 13 10 42 42 H 1.09000 * 109.47433 * 60.00606 * 16 15 14 43 43 H 1.09003 * 109.47150 * 180.02562 * 16 15 14 44 44 H 1.08996 * 109.47451 * 300.00335 * 16 15 14 45 45 H 1.09002 * 109.47140 * 59.99790 * 17 15 14 46 46 H 1.09003 * 109.47115 * 179.97438 * 17 15 14 47 47 H 1.09002 * 109.46731 * 300.00095 * 17 15 14 48 48 H 1.09002 * 109.47185 * 299.99805 * 18 15 14 49 49 H 1.09001 * 109.47368 * 59.99571 * 18 15 14 50 50 H 0.97003 * 119.99971 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1999 0.4259 0.0005 6 6 5.5689 0.6095 0.0005 7 6 6.0961 1.8879 0.0000 8 6 5.2551 2.9851 -0.0010 9 6 3.8850 2.8066 -0.0010 10 6 2.9687 4.0031 -0.0028 11 1 2.0798 3.7792 -0.5924 12 6 2.5581 4.3330 1.4338 13 7 3.6678 5.1545 -0.5888 14 6 2.7134 6.1199 -1.1502 15 6 3.4773 7.3019 -1.7505 16 6 4.3065 7.9807 -0.6585 17 6 4.4057 6.7997 -2.8580 18 6 2.4832 8.3071 -2.3357 19 6 3.2355 9.4717 -2.9265 20 1 4.3147 9.4925 -2.8886 21 6 2.5461 10.5100 -3.5161 22 7 3.2026 11.5265 -4.0312 23 14 0.6796 10.4736 -3.5821 24 1 0.1285 11.1260 -2.3673 25 1 0.2128 11.2009 -4.7897 26 1 0.2139 9.0648 -3.6419 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.7886 -0.5727 0.0009 33 1 6.2280 -0.2459 0.0051 34 1 7.1668 2.0295 0.0005 35 1 5.6692 3.9825 -0.0010 36 1 3.4470 4.5570 2.0234 37 1 1.8950 5.1981 1.4325 38 1 2.0393 3.4786 1.8686 39 1 4.3333 4.8567 -1.2863 40 1 2.1229 5.6364 -1.9284 41 1 2.0517 6.4774 -0.3612 42 1 5.0147 7.2644 -0.2420 43 1 4.8503 8.8231 -1.0861 44 1 3.6451 8.3385 0.1305 45 1 3.8148 6.3161 -3.6360 46 1 4.9495 7.6419 -3.2860 47 1 5.1138 6.0833 -2.4415 48 1 1.8927 7.8233 -3.1137 49 1 1.8214 8.6650 -1.5470 50 1 2.7176 12.2569 -4.4464 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348220197.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:29:15 Heat of formation + Delta-G solvation = -31.754575 kcal Electronic energy + Delta-G solvation = -25611.632328 eV Core-core repulsion = 22217.394861 eV Total energy + Delta-G solvation = -3394.237467 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.210 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.54285 -38.23963 -37.39905 -35.28045 -32.48474 -32.11075 -30.76777 -29.96933 -28.75305 -27.46146 -26.32514 -25.34091 -24.40383 -23.20148 -21.94533 -21.72219 -20.16472 -18.49297 -17.75314 -16.76877 -16.38795 -16.24079 -16.12725 -15.02868 -14.70286 -14.46857 -14.23320 -13.97214 -13.76277 -13.52283 -13.36421 -12.98923 -12.90883 -12.69292 -12.39772 -12.28938 -12.17312 -11.97478 -11.88606 -11.76499 -11.65640 -11.24507 -11.02618 -10.98430 -10.90154 -10.79598 -10.56796 -10.45515 -10.28448 -9.73271 -9.64363 -9.24811 -8.98227 -8.84467 -8.46004 -8.29184 -8.09137 -5.96471 -3.92246 1.18496 1.30478 2.96928 3.35227 3.42624 3.46646 3.62249 4.33582 4.51816 4.52878 4.57722 4.67534 4.78256 4.89054 4.93781 5.04234 5.24473 5.31116 5.36879 5.40548 5.44624 5.49853 5.63879 5.67555 5.71522 5.78630 5.82405 5.92860 5.95995 6.01847 6.16098 6.21707 6.28760 6.35349 6.37798 6.42929 6.50870 6.64938 6.67231 6.76519 6.85289 7.13252 7.19285 7.22998 7.25827 7.38234 7.39788 7.52106 7.71084 7.89709 8.63898 9.09737 9.66988 11.16702 Molecular weight = 305.21amu Principal moments of inertia in cm(-1) A = 0.018389 B = 0.003166 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.273704 B = 8840.762810 C = 9766.622253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.311 6.311 4 C 0.132 3.868 5 C -0.212 4.212 6 C -0.087 4.087 7 C -0.157 4.157 8 C -0.069 4.069 9 C -0.113 4.113 10 C 0.131 3.869 11 H 0.053 0.947 12 C -0.128 4.128 13 N -0.681 5.681 14 C 0.068 3.932 15 C -0.048 4.048 16 C -0.117 4.117 17 C -0.130 4.130 18 C -0.004 4.004 19 C -0.505 4.505 20 H 0.078 0.922 21 C 0.064 3.936 22 N -0.907 5.907 23 Si 0.875 3.125 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.267 1.267 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.124 0.876 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.142 0.858 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.051 0.949 39 H 0.340 0.660 40 H 0.022 0.978 41 H 0.066 0.934 42 H 0.044 0.956 43 H 0.059 0.941 44 H 0.038 0.962 45 H 0.039 0.961 46 H 0.069 0.931 47 H 0.035 0.965 48 H 0.012 0.988 49 H 0.010 0.990 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.142 -25.787 10.035 27.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.225 6.225 4 C 0.086 3.914 5 C -0.231 4.231 6 C -0.105 4.105 7 C -0.175 4.175 8 C -0.087 4.087 9 C -0.115 4.115 10 C 0.021 3.979 11 H 0.071 0.929 12 C -0.186 4.186 13 N -0.314 5.314 14 C -0.061 4.061 15 C -0.049 4.049 16 C -0.174 4.174 17 C -0.188 4.188 18 C -0.042 4.042 19 C -0.543 4.543 20 H 0.096 0.904 21 C -0.136 4.136 22 N -0.546 5.546 23 Si 0.703 3.297 24 H -0.204 1.204 25 H -0.216 1.216 26 H -0.192 1.192 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.142 0.858 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.159 0.841 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.161 0.839 40 H 0.041 0.959 41 H 0.085 0.915 42 H 0.063 0.937 43 H 0.078 0.922 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.088 0.912 47 H 0.054 0.946 48 H 0.030 0.970 49 H 0.028 0.972 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.002 -25.149 10.538 27.268 hybrid contribution -1.282 -0.688 -0.948 1.736 sum -1.284 -25.836 9.590 27.589 Atomic orbital electron populations 1.21774 0.92722 1.02741 1.03732 1.22758 0.95921 0.82192 1.01155 1.86107 1.18982 1.28910 1.88510 1.18801 0.82288 0.93536 0.96748 1.21155 0.94463 0.97670 1.09775 1.20913 0.94207 0.97359 0.98009 1.21098 0.99977 0.92403 1.04064 1.21039 0.91635 0.99887 0.96140 1.19424 0.94457 0.91902 1.05675 1.20211 0.93936 0.86882 0.96871 0.92928 1.21693 1.01272 1.00754 0.94888 1.60732 1.18128 1.13684 1.38841 1.22174 0.93889 0.93041 0.96978 1.20411 0.96091 0.93471 0.94883 1.21604 0.99058 0.99639 0.97102 1.21778 0.98690 1.00570 0.97714 1.19629 0.94663 0.94608 0.95325 1.21148 0.95219 1.02099 1.35861 0.90411 1.25015 0.97928 0.95450 0.95220 1.69914 1.35532 1.09478 1.39721 0.86851 0.86983 0.78404 0.77459 1.20446 1.21619 1.19179 0.91425 0.90477 0.91437 0.92219 0.92195 0.85816 0.86107 0.85880 0.84058 0.92164 0.92409 0.92999 0.83934 0.95928 0.91508 0.93660 0.92217 0.94248 0.94208 0.91184 0.94621 0.96991 0.97173 0.92936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 10.28 37.16 0.38 -0.61 16 2 C 0.05 0.43 5.46 37.16 0.20 0.63 16 3 O -0.31 -3.56 9.27 -19.42 -0.18 -3.74 16 4 C 0.13 1.56 6.66 -39.22 -0.26 1.30 16 5 C -0.21 -2.11 9.04 -39.43 -0.36 -2.47 16 6 C -0.09 -0.81 10.04 -39.60 -0.40 -1.21 16 7 C -0.16 -1.57 10.04 -39.56 -0.40 -1.97 16 8 C -0.07 -0.79 8.85 -39.61 -0.35 -1.14 16 9 C -0.11 -1.42 4.94 -104.47 -0.52 -1.94 16 10 C 0.13 1.76 2.55 -68.86 -0.18 1.58 16 11 H 0.05 0.78 7.35 -51.93 -0.38 0.39 16 12 C -0.13 -1.64 9.40 37.16 0.35 -1.29 16 13 N -0.68 -9.85 4.78 -107.95 -0.52 -10.36 16 14 C 0.07 1.15 4.45 -3.82 -0.02 1.13 16 15 C -0.05 -0.94 0.60 -154.51 -0.09 -1.03 16 16 C -0.12 -2.25 8.06 37.15 0.30 -1.95 16 17 C -0.13 -2.43 7.89 37.16 0.29 -2.14 16 18 C 0.00 -0.11 3.11 -27.88 -0.09 -0.19 16 19 C -0.51 -14.07 8.20 -34.44 -0.28 -14.35 16 20 H 0.08 2.31 5.92 -52.48 -0.31 1.99 16 21 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 22 N -0.91 -28.03 13.96 55.43 0.77 -27.26 16 23 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 31 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 32 H 0.12 0.96 6.30 -52.49 -0.33 0.63 16 33 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 34 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 35 H 0.14 1.61 6.97 -52.49 -0.37 1.24 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.76 7.45 -51.93 -0.39 0.37 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.34 4.82 5.30 -39.29 -0.21 4.61 16 40 H 0.02 0.39 8.05 -51.93 -0.42 -0.03 16 41 H 0.07 1.15 7.44 -51.93 -0.39 0.76 16 42 H 0.04 0.78 7.60 -51.93 -0.39 0.38 16 43 H 0.06 1.28 6.62 -51.93 -0.34 0.94 16 44 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.07 1.47 6.62 -51.93 -0.34 1.13 16 47 H 0.03 0.56 6.57 -51.93 -0.34 0.22 16 48 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 49 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 50 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 384.99 15.07 5.80 5.80 Total: -1.00 -30.68 384.99 -9.04 -39.72 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -8.75 Total: 2.35 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: -1.50 Total: -23.88 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.26 Total: -37.62 kcal Atomic # 8 Polarization: -3.56 SS G_CDS: -0.18 Total: -3.74 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.68 -9.04 -39.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348220197.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.965 kcal (2) G-P(sol) polarization free energy of solvation -30.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds