Wall clock time and date at job start Tue Mar 31 2020 08:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46895 * 110.99788 * 2 1 4 4 C 1.53005 * 109.47480 * 66.04491 * 3 2 1 5 5 C 1.53000 * 117.49932 * 243.74843 * 4 3 2 6 6 C 1.52996 * 117.50173 * 175.08691 * 4 3 2 7 7 C 1.46898 * 111.00240 * 236.04334 * 2 1 3 8 8 C 1.53004 * 109.47192 * 293.95569 * 7 2 1 9 9 H 1.09001 * 110.63980 * 51.85019 * 8 7 2 10 10 C 1.54593 * 110.87647 * 288.58745 * 8 7 2 11 11 C 1.53988 * 105.13853 * 219.61371 * 10 8 7 12 12 N 1.48064 * 107.14543 * 358.91767 * 11 10 8 13 13 C 1.46902 * 111.16437 * 145.63064 * 12 11 10 14 14 C 1.53003 * 109.46914 * 52.60365 * 13 12 11 15 15 H 1.09004 * 109.47342 * 305.00348 * 14 13 12 16 16 C 1.47205 * 109.46781 * 65.00015 * 14 13 12 17 17 N 8.11506 * 88.14573 * 191.03796 * 2 1 3 18 18 C 1.53000 * 109.46952 * 184.99704 * 14 13 12 19 19 C 1.50705 * 109.46851 * 174.99971 * 18 14 13 20 20 H 1.08005 * 119.99867 * 0.02562 * 19 18 14 21 21 C 1.37872 * 119.99815 * 180.02562 * 19 18 14 22 22 N 1.31516 * 120.00101 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00089 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47197 * 89.99933 * 23 21 19 25 25 H 1.48499 * 109.46998 * 209.99796 * 23 21 19 26 26 H 1.48503 * 109.47009 * 329.99551 * 23 21 19 27 27 C 1.48537 * 105.73449 * 25.07892 * 12 11 10 28 28 H 1.09001 * 109.46681 * 183.95531 * 1 2 3 29 29 H 1.08994 * 109.47033 * 303.95249 * 1 2 3 30 30 H 1.08995 * 109.46495 * 63.95781 * 1 2 3 31 31 H 1.08999 * 109.46975 * 186.04541 * 3 2 1 32 32 H 1.09000 * 109.46956 * 306.04473 * 3 2 1 33 33 H 1.09001 * 115.54449 * 29.41476 * 4 3 2 34 34 H 1.08998 * 117.49853 * 359.97438 * 5 4 3 35 35 H 1.08998 * 117.49756 * 145.01856 * 5 4 3 36 36 H 1.08997 * 117.49964 * 214.98090 * 6 4 3 37 37 H 1.09006 * 117.49641 * 359.97438 * 6 4 3 38 38 H 1.08992 * 109.47257 * 173.95306 * 7 2 1 39 39 H 1.09001 * 109.46676 * 53.95468 * 7 2 1 40 40 H 1.09005 * 110.30927 * 338.53155 * 10 8 7 41 41 H 1.08997 * 110.30746 * 100.69589 * 10 8 7 42 42 H 1.09006 * 109.91426 * 118.12915 * 11 10 8 43 43 H 1.08998 * 109.91818 * 239.21826 * 11 10 8 44 44 H 1.08995 * 109.46938 * 172.60380 * 13 12 11 45 45 H 1.08994 * 109.47047 * 292.60901 * 13 12 11 46 46 H 1.08992 * 109.47026 * 295.00113 * 18 14 13 47 47 H 1.08999 * 109.46936 * 55.00673 * 18 14 13 48 48 H 0.97000 * 120.00081 * 179.97438 * 22 21 19 49 49 H 1.09002 * 110.66696 * 202.50331 * 27 12 11 50 50 H 1.09001 * 110.66368 * 79.54170 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0575 1.3183 5 6 0.7036 3.2721 1.2499 6 6 2.1902 3.4608 1.5622 7 6 1.9956 -0.7660 -1.1375 8 6 1.6316 -2.2427 -0.9702 9 1 0.5633 -2.3566 -0.7862 10 6 2.4548 -2.8874 0.1684 11 6 2.8196 -4.2926 -0.3451 12 7 2.2109 -4.4387 -1.6868 13 6 3.0593 -5.2517 -2.5685 14 6 3.3923 -6.5754 -1.8771 15 1 3.8425 -6.3743 -0.9049 16 6 2.1586 -7.3573 -1.6941 17 7 1.2065 -7.9608 -1.5529 18 6 4.3755 -7.3684 -2.7404 19 6 4.7983 -8.6139 -2.0048 20 1 4.4048 -8.8195 -1.0202 21 6 5.6875 -9.4910 -2.5888 22 7 6.0562 -10.5782 -1.9471 23 14 6.3687 -9.1351 -4.2914 24 1 7.6169 -8.3401 -4.1690 25 1 6.6630 -10.4151 -4.9843 26 1 5.3675 -8.3672 -5.0745 27 6 2.0636 -3.0582 -2.2148 28 1 -0.3633 -1.0252 0.0709 29 1 -0.3633 0.5739 0.8524 30 1 -0.3632 0.4512 -0.9233 31 1 3.0797 1.3444 -0.1082 32 1 1.5611 1.9273 -0.8309 33 1 1.5340 1.3976 2.1804 34 1 0.3528 3.5827 0.2657 35 1 -0.0040 3.4116 2.0672 36 1 2.4600 3.7243 2.5849 37 1 2.8175 3.8950 0.7837 38 1 3.0798 -0.6611 -1.1755 39 1 1.5612 -0.3873 -2.0627 40 1 3.3581 -2.3074 0.3575 41 1 1.8543 -2.9600 1.0751 42 1 3.9027 -4.3913 -0.4191 43 1 2.4235 -5.0497 0.3317 44 1 2.5292 -5.4515 -3.4997 45 1 3.9815 -4.7123 -2.7838 46 1 3.8937 -7.6460 -3.6779 47 1 5.2518 -6.7550 -2.9498 48 1 6.6815 -11.1954 -2.3581 49 1 1.2935 -3.0211 -2.9853 50 1 3.0135 -2.6918 -2.6041 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355354557.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:49 Heat of formation + Delta-G solvation = 52.304144 kcal Electronic energy + Delta-G solvation = -24686.226095 eV Core-core repulsion = 21327.926439 eV Total energy + Delta-G solvation = -3358.299656 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.63602 -38.54933 -36.81442 -35.85091 -33.90921 -32.63098 -30.98542 -29.46835 -28.02592 -27.48870 -25.86614 -23.48822 -22.77582 -22.64184 -21.41713 -20.92471 -20.58575 -19.78649 -16.93490 -16.83320 -16.45700 -16.11635 -15.69813 -15.57557 -15.07828 -14.54516 -14.29410 -13.98728 -13.75417 -13.63877 -13.28340 -13.16915 -12.79183 -12.62396 -12.35625 -12.16735 -12.09154 -12.01007 -11.91965 -11.90467 -11.63573 -11.42153 -11.27387 -11.14008 -11.06283 -10.92070 -10.66216 -10.63288 -10.46448 -10.36674 -10.32224 -9.89963 -9.72929 -9.31524 -8.63892 -8.61510 -8.29085 -6.10278 -4.10878 3.25590 3.31743 3.34670 3.35724 3.55183 3.71199 3.78554 4.05191 4.35930 4.38416 4.50483 4.56017 4.67238 4.69774 4.72533 4.84483 4.91887 5.04130 5.12845 5.21958 5.22609 5.24262 5.26414 5.29504 5.34830 5.40730 5.47058 5.47767 5.51693 5.60321 5.63929 5.69570 5.70938 5.74961 5.86020 5.87966 5.94256 6.09084 6.14341 6.21571 6.28105 6.34700 6.73228 6.76417 6.90869 6.98015 7.12100 7.14215 7.64035 8.41058 8.55581 8.93290 9.49492 11.02797 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.027635 B = 0.002290 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.959985 B =12223.619202 C =12554.478039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.536 5.536 3 C 0.086 3.914 4 C -0.144 4.144 5 C -0.185 4.185 6 C -0.179 4.179 7 C 0.064 3.936 8 C -0.087 4.087 9 H 0.083 0.917 10 C -0.110 4.110 11 C 0.028 3.972 12 N -0.519 5.519 13 C 0.052 3.948 14 C 0.016 3.984 15 H 0.106 0.894 16 C 0.252 3.748 17 N -0.469 5.469 18 C -0.005 4.005 19 C -0.527 4.527 20 H 0.074 0.926 21 C 0.071 3.929 22 N -0.897 5.897 23 Si 0.877 3.123 24 H -0.275 1.275 25 H -0.287 1.287 26 H -0.264 1.264 27 C 0.041 3.959 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.022 0.978 31 H 0.077 0.923 32 H 0.033 0.967 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.034 0.966 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.052 0.948 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.054 0.946 46 H 0.026 0.974 47 H 0.032 0.968 48 H 0.264 0.736 49 H 0.078 0.922 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.047 29.331 2.898 30.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.260 5.260 3 C -0.042 4.042 4 C -0.163 4.163 5 C -0.222 4.222 6 C -0.216 4.216 7 C -0.064 4.064 8 C -0.106 4.106 9 H 0.101 0.899 10 C -0.148 4.148 11 C -0.100 4.100 12 N -0.243 5.243 13 C -0.077 4.077 14 C -0.005 4.005 15 H 0.124 0.876 16 C -0.066 4.066 17 N -0.146 5.146 18 C -0.044 4.044 19 C -0.565 4.565 20 H 0.092 0.908 21 C -0.132 4.132 22 N -0.535 5.535 23 Si 0.704 3.296 24 H -0.201 1.201 25 H -0.213 1.213 26 H -0.188 1.188 27 C -0.088 4.088 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.041 0.959 31 H 0.096 0.904 32 H 0.051 0.949 33 H 0.131 0.869 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.094 0.906 39 H 0.052 0.948 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.072 0.928 46 H 0.044 0.956 47 H 0.050 0.950 48 H 0.074 0.926 49 H 0.096 0.904 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.713 27.737 3.554 29.290 hybrid contribution 1.376 0.973 -1.718 2.406 sum -7.337 28.710 1.836 29.689 Atomic orbital electron populations 1.22441 0.87322 1.02431 1.00387 1.61914 1.08083 1.12785 1.43219 1.21675 0.99949 0.88094 0.94496 1.22300 1.03991 0.90182 0.99806 1.23074 0.93278 1.03032 1.02850 1.22960 0.96453 0.99514 1.02711 1.22147 1.00028 0.93158 0.91035 1.22081 1.00948 0.92493 0.95125 0.89854 1.22302 0.99802 0.94591 0.98145 1.22998 0.98171 0.97538 0.91261 1.64828 1.46192 1.10759 1.02475 1.22434 0.95813 0.92954 0.96502 1.19053 0.87877 0.91106 1.02496 0.87643 1.28687 0.93312 0.92263 0.92304 1.80995 1.13247 1.10731 1.09610 1.19642 0.93332 0.95961 0.95475 1.21023 1.26684 1.04282 1.04506 0.90790 1.24995 0.95909 0.94733 0.97522 1.69907 1.33585 1.11803 1.38172 0.86817 0.79769 0.77995 0.84987 1.20069 1.21296 1.18848 1.23213 1.00276 0.88458 0.96837 0.90985 0.91253 0.95904 0.90443 0.94876 0.86894 0.89098 0.88901 0.88701 0.88903 0.90641 0.94775 0.91368 0.91152 0.92942 0.90350 0.90073 0.92810 0.95620 0.95006 0.92572 0.90377 0.93564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.17 60.07 0.55 0.72 16 2 N -0.54 -4.29 4.68 -242.92 -1.14 -5.42 16 3 C 0.09 0.60 5.24 -3.82 -0.02 0.58 16 4 C -0.14 -0.96 4.74 -90.62 -0.43 -1.39 16 5 C -0.19 -1.08 10.18 -26.69 -0.27 -1.35 16 6 C -0.18 -1.03 10.25 -26.70 -0.27 -1.30 16 7 C 0.06 0.52 4.32 -3.82 -0.02 0.50 16 8 C -0.09 -0.82 3.00 -88.76 -0.27 -1.08 16 9 H 0.08 0.84 6.31 -51.93 -0.33 0.52 16 10 C -0.11 -1.13 6.43 -25.38 -0.16 -1.29 16 11 C 0.03 0.35 5.26 -2.67 -0.01 0.33 16 12 N -0.52 -6.90 5.10 -230.31 -1.17 -8.07 16 13 C 0.05 0.75 4.36 -3.82 -0.02 0.73 16 14 C 0.02 0.30 1.95 -93.40 -0.18 0.12 16 15 H 0.11 1.84 6.46 -51.93 -0.34 1.50 16 16 C 0.25 5.32 13.67 -20.76 -0.28 5.03 16 17 N -0.47 -10.87 18.54 42.15 0.78 -10.09 16 18 C -0.01 -0.11 3.49 -27.88 -0.10 -0.21 16 19 C -0.53 -14.30 9.15 -34.44 -0.32 -14.61 16 20 H 0.07 2.21 7.84 -52.48 -0.41 1.79 16 21 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 22 N -0.90 -27.15 13.96 55.43 0.77 -26.38 16 23 Si 0.88 20.72 27.47 -169.99 -4.67 16.05 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.26 -5.91 6.54 56.52 0.37 -5.54 16 27 C 0.04 0.43 5.99 -1.90 -0.01 0.41 16 28 H 0.07 0.57 6.34 -51.93 -0.33 0.24 16 29 H 0.07 0.49 7.16 -51.93 -0.37 0.12 16 30 H 0.02 0.17 8.14 -51.93 -0.42 -0.26 16 31 H 0.08 0.54 7.93 -51.93 -0.41 0.13 16 32 H 0.03 0.23 7.85 -51.93 -0.41 -0.18 16 33 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.09 0.51 8.03 -51.93 -0.42 0.10 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.60 7.75 -51.93 -0.40 0.19 16 39 H 0.03 0.27 8.12 -51.93 -0.42 -0.15 16 40 H 0.07 0.66 7.73 -51.93 -0.40 0.26 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.05 0.64 7.17 -51.93 -0.37 0.27 16 43 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.05 0.68 7.89 -51.93 -0.41 0.27 16 46 H 0.03 0.57 7.20 -51.93 -0.37 0.19 16 47 H 0.03 0.64 7.57 -51.93 -0.39 0.24 16 48 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 49 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 50 H 0.05 0.45 7.76 -51.93 -0.40 0.05 16 LS Contribution 393.87 15.07 5.94 5.94 Total: -1.00 -31.04 393.87 -10.56 -41.59 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -9.16 Total: -2.70 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -1.91 Total: -10.91 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: -0.76 Total: -49.96 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.67 Total: 16.05 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.04 -10.56 -41.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355354557.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.898 kcal (2) G-P(sol) polarization free energy of solvation -31.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds