Wall clock time and date at job start Tue Mar 31 2020 08:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46900 * 111.00096 * 2 1 4 4 C 1.52999 * 109.47057 * 66.04508 * 3 2 1 5 5 C 1.52997 * 117.49628 * 243.74681 * 4 3 2 6 6 C 1.53005 * 117.49585 * 175.08952 * 4 3 2 7 7 C 1.46902 * 110.99668 * 236.04496 * 2 1 3 8 8 C 1.53000 * 109.47389 * 293.94968 * 7 2 1 9 9 H 1.09005 * 110.86994 * 57.39378 * 8 7 2 10 10 C 1.55139 * 110.99269 * 293.55374 * 8 7 2 11 11 C 1.54316 * 103.01810 * 206.21475 * 10 8 7 12 12 N 1.47446 * 107.23320 * 22.28197 * 11 10 8 13 13 C 1.46900 * 111.00255 * 123.25926 * 12 11 10 14 14 C 1.53005 * 109.47060 * 69.87065 * 13 12 11 15 15 H 1.09002 * 109.46834 * 55.00188 * 14 13 12 16 16 C 1.47201 * 109.47426 * 295.00451 * 14 13 12 17 17 N 7.26687 * 107.97929 * 173.30547 * 2 1 3 18 18 C 1.53003 * 109.47033 * 175.00229 * 14 13 12 19 19 C 1.50701 * 109.46875 * 185.00136 * 18 14 13 20 20 H 1.07992 * 120.00193 * 0.02562 * 19 18 14 21 21 C 1.37881 * 119.99388 * 179.97438 * 19 18 14 22 22 N 1.31509 * 120.00378 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99416 * 180.02562 * 21 19 18 24 24 H 1.48491 * 109.47275 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.46966 * 120.00244 * 23 21 19 26 26 H 1.48506 * 109.46846 * 240.00081 * 23 21 19 27 27 C 1.47843 * 108.56761 * 0.99070 * 12 11 10 28 28 H 1.09002 * 109.46755 * 183.95581 * 1 2 3 29 29 H 1.08999 * 109.46675 * 303.95664 * 1 2 3 30 30 H 1.08997 * 109.46729 * 63.95481 * 1 2 3 31 31 H 1.08993 * 109.47083 * 186.04681 * 3 2 1 32 32 H 1.09008 * 109.46991 * 306.04601 * 3 2 1 33 33 H 1.09000 * 115.55122 * 29.41563 * 4 3 2 34 34 H 1.09005 * 117.50662 * 0.02562 * 5 4 3 35 35 H 1.09006 * 117.49706 * 145.02443 * 5 4 3 36 36 H 1.08995 * 117.49254 * 214.97874 * 6 4 3 37 37 H 1.08994 * 117.49943 * 359.97438 * 6 4 3 38 38 H 1.09001 * 109.46727 * 173.95133 * 7 2 1 39 39 H 1.09002 * 109.47245 * 53.95786 * 7 2 1 40 40 H 1.08999 * 110.70823 * 87.83167 * 10 8 7 41 41 H 1.08996 * 110.85104 * 324.66609 * 10 8 7 42 42 H 1.08997 * 109.89177 * 262.87868 * 11 10 8 43 43 H 1.08995 * 110.02481 * 141.76401 * 11 10 8 44 44 H 1.08991 * 109.47253 * 189.87372 * 13 12 11 45 45 H 1.08999 * 109.46647 * 309.87636 * 13 12 11 46 46 H 1.09005 * 109.46876 * 305.00466 * 18 14 13 47 47 H 1.08996 * 109.46756 * 65.00108 * 18 14 13 48 48 H 0.96995 * 120.00216 * 179.97438 * 22 21 19 49 49 H 1.08998 * 110.37465 * 94.73106 * 27 12 11 50 50 H 1.09003 * 110.37404 * 217.07863 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 1.3182 5 6 0.7037 3.2721 1.2498 6 6 2.1903 3.4607 1.5621 7 6 1.9954 -0.7660 -1.1376 8 6 1.6315 -2.2427 -0.9703 9 1 0.5523 -2.3692 -0.8834 10 6 2.3635 -2.8607 0.2499 11 6 2.4487 -4.3571 -0.1171 12 7 2.3284 -4.4548 -1.5834 13 6 3.4869 -5.1486 -2.1618 14 6 3.4392 -6.6287 -1.7771 15 1 2.4822 -7.0526 -2.0815 16 6 3.5932 -6.7620 -0.3192 17 7 3.7121 -6.8649 0.8058 18 6 4.5746 -7.3752 -2.4803 19 6 4.4547 -8.8511 -2.2000 20 1 3.6490 -9.2197 -1.5825 21 6 5.3730 -9.7308 -2.7329 22 7 6.3537 -9.2819 -3.4853 23 14 5.2239 -11.5603 -2.3860 24 1 4.0437 -11.8051 -1.5188 25 1 5.0593 -12.2949 -3.6660 26 1 6.4508 -12.0350 -1.6971 27 6 2.1975 -3.0901 -2.1369 28 1 -0.3633 -1.0253 0.0709 29 1 -0.3632 0.5740 0.8524 30 1 -0.3633 0.4512 -0.9233 31 1 3.0797 1.3444 -0.1082 32 1 1.5611 1.9274 -0.8310 33 1 1.5341 1.3976 2.1804 34 1 0.3522 3.5823 0.2657 35 1 -0.0038 3.4116 2.0672 36 1 2.4601 3.7242 2.5848 37 1 2.8176 3.8950 0.7837 38 1 3.0797 -0.6611 -1.1757 39 1 1.5611 -0.3873 -2.0628 40 1 1.7813 -2.7198 1.1606 41 1 3.3602 -2.4339 0.3614 42 1 1.6340 -4.9027 0.3589 43 1 3.4064 -4.7663 0.2043 44 1 3.4621 -5.0543 -3.2473 45 1 4.4052 -4.7032 -1.7792 46 1 4.5118 -7.2031 -3.5549 47 1 5.5329 -7.0116 -2.1095 48 1 7.0000 -9.9007 -3.8599 49 1 3.1719 -2.7101 -2.4441 50 1 1.5053 -3.0869 -2.9790 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355354560.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:52 Heat of formation + Delta-G solvation = 54.082292 kcal Electronic energy + Delta-G solvation = -24748.618899 eV Core-core repulsion = 21390.396349 eV Total energy + Delta-G solvation = -3358.222550 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.64759 -38.55662 -36.81377 -35.76168 -33.94971 -32.60375 -30.80296 -29.32447 -27.99858 -27.15560 -25.72957 -23.41139 -22.76203 -22.68879 -21.70688 -20.76264 -20.47852 -19.85615 -16.96828 -16.65152 -16.38269 -16.02738 -15.58173 -15.49305 -14.92037 -14.59239 -14.32427 -13.94149 -13.75600 -13.46033 -13.24898 -13.03287 -12.74017 -12.59219 -12.36999 -12.28212 -12.06062 -11.97677 -11.89345 -11.75889 -11.70882 -11.18865 -11.12017 -11.04772 -10.89187 -10.71685 -10.68537 -10.55441 -10.48637 -10.33904 -10.29714 -10.17311 -9.49814 -9.18211 -8.61011 -8.44306 -8.14490 -6.08132 -4.10869 3.29671 3.34009 3.37770 3.42849 3.57512 3.63636 3.69694 4.11301 4.38169 4.42917 4.52324 4.59864 4.69377 4.71051 4.81309 4.86339 4.95646 5.05685 5.15615 5.24332 5.27241 5.29243 5.29991 5.33369 5.40420 5.45799 5.50207 5.53475 5.60114 5.68797 5.69641 5.71508 5.73938 5.83149 5.89151 6.00054 6.11523 6.14583 6.18596 6.37467 6.41883 6.58496 6.76321 6.78570 7.12609 7.25592 7.45680 7.55540 7.87566 8.25427 8.46293 8.94076 9.54493 11.02839 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.037958 B = 0.002170 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.471098 B =12897.857043 C =13027.368300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.537 5.537 3 C 0.086 3.914 4 C -0.145 4.145 5 C -0.185 4.185 6 C -0.179 4.179 7 C 0.066 3.934 8 C -0.093 4.093 9 H 0.083 0.917 10 C -0.118 4.118 11 C 0.027 3.973 12 N -0.529 5.529 13 C 0.059 3.941 14 C 0.008 3.992 15 H 0.110 0.890 16 C 0.250 3.750 17 N -0.481 5.481 18 C 0.032 3.968 19 C -0.524 4.524 20 H 0.057 0.943 21 C 0.061 3.939 22 N -0.892 5.892 23 Si 0.891 3.109 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.284 1.284 27 C 0.048 3.952 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.023 0.977 31 H 0.077 0.923 32 H 0.033 0.967 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.035 0.965 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.092 0.908 45 H 0.039 0.961 46 H 0.039 0.961 47 H 0.024 0.976 48 H 0.262 0.738 49 H 0.047 0.953 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.937 24.808 3.503 27.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.260 5.260 3 C -0.042 4.042 4 C -0.163 4.163 5 C -0.222 4.222 6 C -0.216 4.216 7 C -0.062 4.062 8 C -0.112 4.112 9 H 0.102 0.898 10 C -0.157 4.157 11 C -0.101 4.101 12 N -0.253 5.253 13 C -0.070 4.070 14 C -0.014 4.014 15 H 0.127 0.873 16 C -0.065 4.065 17 N -0.159 5.159 18 C -0.007 4.007 19 C -0.562 4.562 20 H 0.076 0.924 21 C -0.141 4.141 22 N -0.531 5.531 23 Si 0.719 3.281 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.210 1.210 27 C -0.080 4.080 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.041 0.959 31 H 0.095 0.905 32 H 0.052 0.948 33 H 0.131 0.869 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.093 0.907 39 H 0.054 0.946 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.110 0.890 45 H 0.058 0.942 46 H 0.057 0.943 47 H 0.042 0.958 48 H 0.071 0.929 49 H 0.065 0.935 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.883 24.052 5.394 26.945 hybrid contribution 0.454 -0.214 -0.811 0.953 sum -10.429 23.838 4.584 26.420 Atomic orbital electron populations 1.22431 0.87342 1.02365 1.00373 1.61917 1.08063 1.12789 1.43248 1.21673 0.99964 0.88083 0.94481 1.22300 1.04007 0.90188 0.99815 1.23072 0.93261 1.03015 1.02840 1.22957 0.96450 0.99514 1.02706 1.22083 1.00054 0.93046 0.91036 1.22303 1.00720 0.92761 0.95432 0.89836 1.22639 1.00387 0.94537 0.98124 1.23194 1.02136 0.96256 0.88481 1.63638 1.40848 1.16155 1.04665 1.22391 0.90862 0.93173 1.00592 1.19327 1.04697 0.95202 0.82174 0.87257 1.29118 0.91581 0.90763 0.95063 1.81035 1.10608 1.10675 1.13533 1.19172 0.91128 0.94473 0.95911 1.21190 1.12137 0.91566 1.31343 0.92433 1.24960 0.95150 0.99011 0.94932 1.69944 1.14854 1.34847 1.33435 0.86535 0.78137 0.85316 0.78097 1.19670 1.20842 1.21023 1.23015 0.99912 0.87908 0.97179 0.91066 0.91296 0.95876 0.90467 0.94836 0.86936 0.89079 0.88922 0.88719 0.88888 0.90712 0.94647 0.90878 0.91751 0.90955 0.91705 0.89009 0.94226 0.94262 0.95812 0.92882 0.93464 0.90249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.17 60.07 0.55 0.73 16 2 N -0.54 -4.62 4.58 -242.91 -1.11 -5.73 16 3 C 0.09 0.65 5.24 -3.82 -0.02 0.63 16 4 C -0.14 -1.04 4.74 -90.62 -0.43 -1.47 16 5 C -0.18 -1.14 10.18 -26.69 -0.27 -1.42 16 6 C -0.18 -1.11 10.26 -26.69 -0.27 -1.39 16 7 C 0.07 0.58 4.41 -3.82 -0.02 0.56 16 8 C -0.09 -0.94 2.89 -88.48 -0.26 -1.19 16 9 H 0.08 0.86 6.54 -51.93 -0.34 0.52 16 10 C -0.12 -1.41 6.24 -24.91 -0.16 -1.57 16 11 C 0.03 0.40 5.24 -2.84 -0.01 0.38 16 12 N -0.53 -7.43 5.16 -231.26 -1.19 -8.63 16 13 C 0.06 0.91 4.34 -3.82 -0.02 0.89 16 14 C 0.01 0.15 2.42 -93.40 -0.23 -0.07 16 15 H 0.11 2.01 8.14 -51.93 -0.42 1.59 16 16 C 0.25 5.20 10.66 -20.76 -0.22 4.98 16 17 N -0.48 -10.62 17.69 42.15 0.75 -9.88 16 18 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 19 C -0.52 -14.11 8.60 -34.44 -0.30 -14.41 16 20 H 0.06 1.55 7.59 -52.49 -0.40 1.15 16 21 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 22 N -0.89 -25.68 13.29 55.43 0.74 -24.95 16 23 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 24 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 27 C 0.05 0.54 6.15 -2.30 -0.01 0.52 16 28 H 0.07 0.58 6.44 -51.93 -0.33 0.24 16 29 H 0.07 0.51 7.16 -51.93 -0.37 0.14 16 30 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.08 0.59 7.93 -51.93 -0.41 0.18 16 32 H 0.03 0.25 7.86 -51.92 -0.41 -0.16 16 33 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.09 0.54 8.03 -51.93 -0.42 0.12 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.67 7.90 -51.93 -0.41 0.26 16 39 H 0.04 0.29 8.12 -51.93 -0.42 -0.13 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.06 0.79 8.02 -51.93 -0.42 0.37 16 42 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.06 1.10 4.76 -51.93 -0.25 0.85 16 44 H 0.09 1.28 8.07 -51.93 -0.42 0.87 16 45 H 0.04 0.62 7.96 -51.93 -0.41 0.21 16 46 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 47 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 48 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 49 H 0.05 0.51 7.71 -51.93 -0.40 0.11 16 50 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 393.95 15.07 5.94 5.94 Total: -1.00 -29.30 393.95 -10.99 -40.29 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -9.19 Total: -2.94 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -1.88 Total: -10.58 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: -0.82 Total: -49.18 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.30 -10.99 -40.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355354560.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.372 kcal (2) G-P(sol) polarization free energy of solvation -29.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds