Wall clock time and date at job start Tue Mar 31 2020 08:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 110.99932 * 2 1 4 4 C 1.52998 * 109.47351 * 293.96003 * 3 2 1 5 5 C 1.53006 * 117.49612 * 243.62317 * 4 3 2 6 6 C 1.52998 * 117.49824 * 175.00085 * 4 3 2 7 7 C 1.46899 * 111.00045 * 123.95542 * 2 1 3 8 8 C 1.52997 * 109.47063 * 66.04736 * 7 2 1 9 9 H 1.09001 * 110.27655 * 307.09051 * 8 7 2 10 10 C 1.54604 * 110.39348 * 69.23128 * 8 7 2 11 11 C 1.54940 * 102.91923 * 140.91527 * 10 8 7 12 12 N 1.48530 * 103.22772 * 322.58912 * 11 10 8 13 13 C 1.46906 * 110.99918 * 159.72252 * 12 11 10 14 14 C 1.53000 * 109.47072 * 52.60105 * 13 12 11 15 15 H 1.09000 * 109.47065 * 305.00093 * 14 13 12 16 16 C 1.47192 * 109.47379 * 65.00010 * 14 13 12 17 17 N 7.74384 * 128.91537 * 160.23139 * 2 1 3 18 18 C 1.53005 * 109.46990 * 185.00298 * 14 13 12 19 19 C 1.50696 * 109.47144 * 175.00093 * 18 14 13 20 20 H 1.08006 * 119.99979 * 359.97438 * 19 18 14 21 21 C 1.37876 * 120.00161 * 180.02562 * 19 18 14 22 22 N 1.31507 * 119.99812 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99965 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47404 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.46904 * 119.99942 * 23 21 19 26 26 H 1.48500 * 109.46825 * 239.99454 * 23 21 19 27 27 C 1.47899 * 105.82565 * 39.20791 * 12 11 10 28 28 H 1.09008 * 109.46945 * 296.04168 * 1 2 3 29 29 H 1.09000 * 109.47357 * 56.04044 * 1 2 3 30 30 H 1.08997 * 109.47243 * 176.04461 * 1 2 3 31 31 H 1.09003 * 109.46860 * 53.96063 * 3 2 1 32 32 H 1.08998 * 109.47134 * 173.95025 * 3 2 1 33 33 H 1.08997 * 115.54968 * 29.32541 * 4 3 2 34 34 H 1.09000 * 117.49691 * 359.97438 * 5 4 3 35 35 H 1.08998 * 117.49569 * 145.01735 * 5 4 3 36 36 H 1.09003 * 117.49713 * 214.97343 * 6 4 3 37 37 H 1.08994 * 117.49876 * 359.97438 * 6 4 3 38 38 H 1.08993 * 109.47456 * 306.04280 * 7 2 1 39 39 H 1.09004 * 109.47090 * 186.04242 * 7 2 1 40 40 H 1.09002 * 110.72257 * 259.27488 * 10 8 7 41 41 H 1.08997 * 110.72010 * 22.37994 * 10 8 7 42 42 H 1.09002 * 110.66363 * 204.14979 * 11 10 8 43 43 H 1.09004 * 110.66357 * 81.02699 * 11 10 8 44 44 H 1.08993 * 109.47164 * 172.59958 * 13 12 11 45 45 H 1.08996 * 109.46920 * 292.59993 * 13 12 11 46 46 H 1.08995 * 109.46625 * 294.99737 * 18 14 13 47 47 H 1.09002 * 109.46736 * 54.99798 * 18 14 13 48 48 H 0.97000 * 120.00338 * 180.02562 * 22 21 19 49 49 H 1.08997 * 109.91760 * 94.02263 * 27 12 11 50 50 H 1.09001 * 109.91722 * 215.12221 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0576 -1.3182 5 6 2.7805 2.4776 -2.2369 6 6 1.9900 3.5375 -1.4669 7 6 1.9954 -0.7660 1.1376 8 6 1.6315 -2.2426 0.9702 9 1 0.5595 -2.3511 0.8051 10 6 2.4208 -2.8621 -0.2059 11 6 2.7790 -4.2738 0.3226 12 7 3.0648 -4.0359 1.7606 13 6 2.9560 -5.2813 2.5321 14 6 3.8236 -6.3612 1.8823 15 1 3.5416 -6.4724 0.8352 16 6 5.2402 -5.9712 1.9701 17 7 6.3335 -5.6702 2.0379 18 6 3.6143 -7.6903 2.6107 19 6 4.3727 -8.7793 1.8967 20 1 4.9462 -8.5468 1.0115 21 6 4.3335 -10.0727 2.3728 22 7 3.6347 -10.3559 3.4502 23 14 5.2730 -11.4227 1.4872 24 1 5.9739 -10.8483 0.3108 25 1 6.2677 -12.0223 2.4125 26 1 4.3237 -12.4710 1.0341 27 6 2.0649 -3.0439 2.2118 28 1 -0.3633 0.4512 0.9234 29 1 -0.3634 0.5741 -0.8524 30 1 -0.3633 -1.0252 -0.0709 31 1 1.5611 1.9273 0.8310 32 1 3.0797 1.3445 0.1083 33 1 0.7105 1.7131 -1.7888 34 1 3.7959 2.2655 -1.9019 35 1 2.6158 2.4094 -3.3122 36 1 1.3053 4.1665 -2.0358 37 1 2.4849 4.0224 -0.6255 38 1 1.5612 -0.3873 2.0627 39 1 3.0798 -0.6612 1.1755 40 1 1.7957 -2.9307 -1.0963 41 1 3.3218 -2.2845 -0.4124 42 1 3.6613 -4.6625 -0.1859 43 1 1.9353 -4.9539 0.2054 44 1 3.2964 -5.1074 3.5528 45 1 1.9169 -5.6101 2.5466 46 1 3.9789 -7.6048 3.6343 47 1 2.5521 -7.9348 2.6225 48 1 3.6075 -11.2657 3.7854 49 1 1.2040 -3.5545 2.6434 50 1 2.5101 -2.3776 2.9507 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355354563.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:55 Heat of formation + Delta-G solvation = 49.495132 kcal Electronic energy + Delta-G solvation = -24706.758109 eV Core-core repulsion = 21348.336645 eV Total energy + Delta-G solvation = -3358.421464 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.60295 -38.45977 -36.74931 -35.80535 -33.85461 -32.65791 -30.73590 -29.43517 -27.90191 -27.14338 -25.78567 -23.45779 -22.77308 -22.55612 -21.73203 -20.80425 -20.47815 -19.86747 -16.89093 -16.46943 -16.42908 -15.98743 -15.61635 -15.41419 -14.91894 -14.61951 -14.38034 -13.94636 -13.86844 -13.48439 -13.30842 -12.95881 -12.79069 -12.55586 -12.19475 -12.10340 -11.98318 -11.84479 -11.80619 -11.68686 -11.45289 -11.28014 -11.13196 -11.10714 -10.99007 -10.83918 -10.64219 -10.63938 -10.48138 -10.41693 -10.28402 -10.13463 -9.52420 -9.20120 -8.56303 -8.45780 -8.21467 -6.09323 -4.12286 3.28725 3.33678 3.36965 3.41811 3.69140 3.75741 3.84379 4.16218 4.37085 4.41984 4.55871 4.60679 4.69169 4.73416 4.79759 4.93423 5.00271 5.01994 5.15350 5.27167 5.28763 5.28901 5.34536 5.34864 5.41992 5.46259 5.52069 5.57363 5.60308 5.64625 5.69417 5.74342 5.77949 5.82712 5.92604 5.96502 6.03441 6.13553 6.15920 6.32213 6.43920 6.49252 6.78165 6.80845 7.05845 7.21967 7.43039 7.53616 7.86190 8.23751 8.59872 8.92653 9.53173 11.01630 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.029669 B = 0.002257 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.505835 B =12404.606198 C =12666.114970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.536 5.536 3 C 0.086 3.914 4 C -0.146 4.146 5 C -0.174 4.174 6 C -0.185 4.185 7 C 0.067 3.933 8 C -0.094 4.094 9 H 0.074 0.926 10 C -0.102 4.102 11 C 0.028 3.972 12 N -0.519 5.519 13 C 0.054 3.946 14 C 0.007 3.993 15 H 0.100 0.900 16 C 0.254 3.746 17 N -0.478 5.478 18 C 0.031 3.969 19 C -0.525 4.525 20 H 0.057 0.943 21 C 0.062 3.938 22 N -0.892 5.892 23 Si 0.891 3.109 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.283 1.283 27 C 0.041 3.959 28 H 0.023 0.977 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.035 0.965 32 H 0.075 0.925 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.032 0.968 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.049 0.951 44 H 0.080 0.920 45 H 0.054 0.946 46 H 0.026 0.974 47 H 0.037 0.963 48 H 0.262 0.738 49 H 0.046 0.954 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.249 24.352 -7.438 27.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.260 5.260 3 C -0.042 4.042 4 C -0.165 4.165 5 C -0.211 4.211 6 C -0.222 4.222 7 C -0.061 4.061 8 C -0.113 4.113 9 H 0.093 0.907 10 C -0.140 4.140 11 C -0.100 4.100 12 N -0.243 5.243 13 C -0.075 4.075 14 C -0.015 4.015 15 H 0.118 0.882 16 C -0.062 4.062 17 N -0.154 5.154 18 C -0.007 4.007 19 C -0.563 4.563 20 H 0.075 0.925 21 C -0.140 4.140 22 N -0.530 5.530 23 Si 0.719 3.281 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.209 1.209 27 C -0.088 4.088 28 H 0.042 0.958 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.053 0.947 32 H 0.094 0.906 33 H 0.126 0.874 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.051 0.949 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.100 0.900 43 H 0.068 0.932 44 H 0.098 0.902 45 H 0.072 0.928 46 H 0.045 0.955 47 H 0.055 0.945 48 H 0.071 0.929 49 H 0.065 0.935 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.952 24.620 -7.557 26.953 hybrid contribution -1.055 -0.951 0.269 1.446 sum -9.007 23.668 -7.288 26.352 Atomic orbital electron populations 1.22476 0.87705 1.02356 1.00296 1.61896 1.07733 1.12895 1.43479 1.21669 0.99938 0.87947 0.94647 1.22290 1.00122 0.95953 0.98119 1.22998 0.96693 1.03257 0.98136 1.22978 1.04165 0.91751 1.03333 1.22222 1.00416 0.92867 0.90616 1.22018 1.00040 0.93710 0.95540 0.90721 1.22381 0.99998 0.94899 0.96686 1.23332 1.00471 0.96936 0.89241 1.64853 1.46771 1.09848 1.02825 1.22429 0.98730 0.88164 0.98176 1.19294 0.82190 0.97090 1.02924 0.88189 1.28847 0.94745 0.90607 0.92051 1.80978 1.12873 1.11716 1.09877 1.19178 0.98446 0.87347 0.95773 1.21178 1.30290 0.92842 1.11973 0.92456 1.24959 0.95337 0.98789 0.94956 1.69945 1.40733 1.20007 1.22347 0.86535 0.79805 0.81889 0.79859 1.19656 1.20962 1.20870 1.22876 0.94017 0.94968 0.96912 0.95822 0.91407 0.91032 0.94650 0.90632 0.87442 0.88733 0.88921 0.88897 0.88940 0.94941 0.90253 0.91264 0.90770 0.89984 0.93230 0.90171 0.92799 0.95545 0.94501 0.92865 0.93540 0.90650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.16 60.06 0.55 0.70 16 2 N -0.54 -4.58 4.63 -242.92 -1.12 -5.70 16 3 C 0.09 0.67 5.24 -3.82 -0.02 0.65 16 4 C -0.15 -1.06 5.68 -90.62 -0.51 -1.57 16 5 C -0.17 -1.21 10.18 -26.73 -0.27 -1.48 16 6 C -0.18 -1.16 10.25 -26.73 -0.27 -1.43 16 7 C 0.07 0.60 4.05 -3.83 -0.02 0.58 16 8 C -0.09 -0.91 2.94 -89.26 -0.26 -1.17 16 9 H 0.07 0.68 6.32 -51.93 -0.33 0.35 16 10 C -0.10 -1.09 6.48 -24.86 -0.16 -1.25 16 11 C 0.03 0.35 5.09 -1.90 -0.01 0.34 16 12 N -0.52 -7.19 5.10 -230.45 -1.17 -8.36 16 13 C 0.05 0.83 4.39 -3.82 -0.02 0.81 16 14 C 0.01 0.13 1.90 -93.41 -0.18 -0.05 16 15 H 0.10 1.77 6.52 -51.93 -0.34 1.44 16 16 C 0.25 5.43 13.67 -20.76 -0.28 5.15 16 17 N -0.48 -11.04 18.54 42.15 0.78 -10.26 16 18 C 0.03 0.73 4.42 -27.88 -0.12 0.61 16 19 C -0.52 -14.07 8.60 -34.44 -0.30 -14.37 16 20 H 0.06 1.54 7.59 -52.48 -0.40 1.14 16 21 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 22 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 23 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 24 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 C 0.04 0.46 6.35 -2.75 -0.02 0.44 16 28 H 0.02 0.17 8.14 -51.92 -0.42 -0.25 16 29 H 0.07 0.45 6.22 -51.93 -0.32 0.13 16 30 H 0.07 0.52 6.35 -51.93 -0.33 0.20 16 31 H 0.04 0.27 8.12 -51.93 -0.42 -0.15 16 32 H 0.08 0.61 7.66 -51.93 -0.40 0.21 16 33 H 0.11 0.79 6.36 -51.93 -0.33 0.46 16 34 H 0.09 0.67 8.03 -51.93 -0.42 0.25 16 35 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.03 0.28 8.12 -51.93 -0.42 -0.14 16 39 H 0.08 0.79 7.79 -51.93 -0.40 0.38 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.87 7.77 -51.93 -0.40 0.47 16 42 H 0.08 1.14 7.56 -51.93 -0.39 0.74 16 43 H 0.05 0.61 8.01 -51.93 -0.42 0.19 16 44 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 45 H 0.05 0.76 7.81 -51.93 -0.41 0.36 16 46 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 49 H 0.05 0.50 7.57 -51.93 -0.39 0.10 16 50 H 0.08 0.83 7.69 -51.93 -0.40 0.43 16 LS Contribution 395.19 15.07 5.96 5.96 Total: -1.00 -29.92 395.19 -10.87 -40.79 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -9.04 Total: -3.50 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -1.99 Total: -10.44 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: -0.78 Total: -49.22 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.92 -10.87 -40.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355354563.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.290 kcal (2) G-P(sol) polarization free energy of solvation -29.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds