Wall clock time and date at job start Tue Mar 31 2020 08:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46903 * 110.99935 * 2 1 4 4 C 1.52997 * 109.47194 * 293.95942 * 3 2 1 5 5 C 1.53011 * 117.49603 * 243.62241 * 4 3 2 6 6 C 1.53002 * 117.49894 * 175.00156 * 4 3 2 7 7 C 1.46890 * 111.00101 * 123.95467 * 2 1 3 8 8 C 1.53001 * 109.47057 * 66.04706 * 7 2 1 9 9 H 1.09001 * 110.27347 * 307.08587 * 8 7 2 10 10 C 1.54600 * 110.39322 * 69.23509 * 8 7 2 11 11 C 1.54937 * 102.92077 * 140.91530 * 10 8 7 12 12 N 1.48530 * 103.22861 * 322.58653 * 11 10 8 13 13 C 1.46907 * 110.99889 * 159.72125 * 12 11 10 14 14 C 1.52996 * 109.47023 * 52.60471 * 13 12 11 15 15 H 1.08994 * 109.47407 * 54.99496 * 14 13 12 16 16 C 1.47202 * 109.47032 * 294.99579 * 14 13 12 17 17 N 7.08748 * 101.47789 * 183.97507 * 2 1 3 18 18 C 1.53000 * 109.47246 * 174.99969 * 14 13 12 19 19 C 1.50696 * 109.47457 * 184.99530 * 18 14 13 20 20 H 1.08003 * 120.00087 * 0.02562 * 19 18 14 21 21 C 1.37875 * 119.99956 * 179.97438 * 19 18 14 22 22 N 1.31510 * 120.00308 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99908 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46845 * 60.00735 * 23 21 19 25 25 H 1.48503 * 109.47399 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47295 * 300.00832 * 23 21 19 27 27 C 1.47898 * 105.82104 * 39.20786 * 12 11 10 28 28 H 1.08996 * 109.46825 * 296.04608 * 1 2 3 29 29 H 1.08999 * 109.47056 * 56.04263 * 1 2 3 30 30 H 1.08998 * 109.46802 * 176.04672 * 1 2 3 31 31 H 1.09004 * 109.46732 * 53.95317 * 3 2 1 32 32 H 1.08995 * 109.46942 * 173.95217 * 3 2 1 33 33 H 1.09001 * 115.55606 * 29.32121 * 4 3 2 34 34 H 1.09001 * 117.49508 * 359.97438 * 5 4 3 35 35 H 1.09000 * 117.49732 * 145.02042 * 5 4 3 36 36 H 1.09000 * 117.49645 * 214.97537 * 6 4 3 37 37 H 1.08998 * 117.50005 * 359.97438 * 6 4 3 38 38 H 1.08999 * 109.47688 * 306.05057 * 7 2 1 39 39 H 1.08998 * 109.47436 * 186.04703 * 7 2 1 40 40 H 1.08996 * 110.72297 * 259.27340 * 10 8 7 41 41 H 1.08999 * 110.72356 * 22.55635 * 10 8 7 42 42 H 1.09001 * 110.66823 * 204.14885 * 11 10 8 43 43 H 1.09001 * 110.66645 * 81.02469 * 11 10 8 44 44 H 1.08999 * 109.47054 * 292.60077 * 13 12 11 45 45 H 1.08997 * 109.46880 * 172.60238 * 13 12 11 46 46 H 1.09001 * 109.47194 * 64.99494 * 18 14 13 47 47 H 1.09004 * 109.46724 * 305.00153 * 18 14 13 48 48 H 0.97000 * 119.99806 * 0.02562 * 22 21 19 49 49 H 1.09002 * 109.92048 * 94.02161 * 27 12 11 50 50 H 1.09004 * 109.91639 * 215.12052 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6314 2.0575 -1.3182 5 6 2.7806 2.4776 -2.2369 6 6 1.9900 3.5375 -1.4670 7 6 1.9955 -0.7659 1.1375 8 6 1.6315 -2.2426 0.9702 9 1 0.5595 -2.3510 0.8052 10 6 2.4209 -2.8621 -0.2059 11 6 2.7791 -4.2738 0.3227 12 7 3.0649 -4.0359 1.7607 13 6 2.9560 -5.2813 2.5322 14 6 3.8236 -6.3611 1.8824 15 1 4.8464 -5.9968 1.7871 16 6 3.2906 -6.6817 0.5482 17 7 2.8794 -6.9290 -0.4815 18 6 3.8092 -7.6192 2.7530 19 6 4.7590 -8.6385 2.1786 20 1 5.3174 -8.4116 1.2824 21 6 4.9159 -9.8604 2.7977 22 7 4.2364 -10.1366 3.8893 23 14 6.0937 -11.1236 2.0861 24 1 7.4666 -10.5582 2.0554 25 1 6.0797 -12.3447 2.9311 26 1 5.6710 -11.4723 0.7060 27 6 2.0649 -3.0439 2.2118 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3633 -1.0252 -0.0709 31 1 1.5611 1.9273 0.8310 32 1 3.0797 1.3444 0.1083 33 1 0.7106 1.7130 -1.7889 34 1 3.7960 2.2655 -1.9019 35 1 2.6159 2.4094 -3.3122 36 1 1.3053 4.1665 -2.0358 37 1 2.4850 4.0224 -0.6256 38 1 1.5612 -0.3873 2.0628 39 1 3.0797 -0.6611 1.1756 40 1 1.7959 -2.9307 -1.0962 41 1 3.3235 -2.2863 -0.4104 42 1 3.6614 -4.6626 -0.1857 43 1 1.9354 -4.9539 0.2055 44 1 1.9169 -5.6101 2.5467 45 1 3.2964 -5.1073 3.5529 46 1 2.8015 -8.0339 2.7757 47 1 4.1198 -7.3634 3.7661 48 1 3.6245 -9.4808 4.2586 49 1 1.2039 -3.5544 2.6434 50 1 2.5101 -2.3775 2.9507 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355354565.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:57 Heat of formation + Delta-G solvation = 56.531820 kcal Electronic energy + Delta-G solvation = -24878.225454 eV Core-core repulsion = 21520.109124 eV Total energy + Delta-G solvation = -3358.116330 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.76331 -38.58607 -36.93165 -35.79009 -34.22312 -32.81339 -30.73285 -29.38882 -27.91939 -27.00575 -25.53608 -23.42470 -22.82497 -22.62381 -22.02340 -20.75884 -20.48670 -19.88103 -17.34120 -16.76123 -16.61404 -15.96457 -15.68804 -15.47949 -14.83304 -14.48964 -14.20490 -13.88891 -13.77409 -13.62947 -13.60095 -13.19822 -12.83428 -12.59856 -12.32437 -12.16413 -12.12402 -12.06572 -11.85786 -11.72028 -11.53344 -11.34211 -11.20883 -11.14350 -10.91606 -10.75928 -10.60784 -10.51756 -10.44058 -10.33170 -10.27623 -10.15105 -9.87732 -8.66514 -8.58217 -8.40533 -8.31198 -6.42917 -4.13878 3.31795 3.43303 3.45743 3.50172 3.55226 3.63846 3.67735 4.09024 4.35273 4.51105 4.53394 4.58277 4.64985 4.70473 4.71185 4.78301 4.98278 5.00326 5.12722 5.22448 5.26962 5.30578 5.32186 5.35536 5.38150 5.42279 5.45733 5.53474 5.56279 5.59609 5.63858 5.68443 5.76521 5.80942 5.89790 5.91440 6.05750 6.09566 6.11646 6.23070 6.29557 6.39824 6.75692 6.78910 6.95199 7.10707 7.11428 7.25864 8.03710 8.29976 8.40143 8.79582 9.57139 10.97827 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.032944 B = 0.002265 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.729159 B =12357.088155 C =12658.564285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.537 5.537 3 C 0.086 3.914 4 C -0.147 4.147 5 C -0.174 4.174 6 C -0.184 4.184 7 C 0.068 3.932 8 C -0.095 4.095 9 H 0.073 0.927 10 C -0.100 4.100 11 C 0.022 3.978 12 N -0.515 5.515 13 C 0.054 3.946 14 C 0.012 3.988 15 H 0.111 0.889 16 C 0.247 3.753 17 N -0.476 5.476 18 C 0.019 3.981 19 C -0.605 4.605 20 H 0.051 0.949 21 C 0.020 3.980 22 N -0.908 5.908 23 Si 1.066 2.934 24 H -0.286 1.286 25 H -0.282 1.282 26 H -0.288 1.288 27 C 0.040 3.960 28 H 0.024 0.976 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.036 0.964 32 H 0.076 0.924 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.033 0.967 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.048 0.952 44 H 0.039 0.961 45 H 0.094 0.906 46 H 0.014 0.986 47 H 0.030 0.970 48 H 0.269 0.731 49 H 0.045 0.955 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.303 26.204 -5.027 27.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.261 5.261 3 C -0.041 4.041 4 C -0.166 4.166 5 C -0.211 4.211 6 C -0.222 4.222 7 C -0.060 4.060 8 C -0.114 4.114 9 H 0.092 0.908 10 C -0.139 4.139 11 C -0.106 4.106 12 N -0.239 5.239 13 C -0.075 4.075 14 C -0.010 4.010 15 H 0.129 0.871 16 C -0.069 4.069 17 N -0.153 5.153 18 C -0.019 4.019 19 C -0.643 4.643 20 H 0.069 0.931 21 C -0.185 4.185 22 N -0.544 5.544 23 Si 0.894 3.106 24 H -0.212 1.212 25 H -0.207 1.207 26 H -0.215 1.215 27 C -0.088 4.088 28 H 0.042 0.958 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.054 0.946 32 H 0.094 0.906 33 H 0.125 0.875 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.051 0.949 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.112 0.888 46 H 0.033 0.967 47 H 0.049 0.951 48 H 0.079 0.921 49 H 0.063 0.937 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.623 24.253 -6.686 25.779 hybrid contribution -1.597 1.624 0.783 2.408 sum -7.219 25.877 -5.903 27.506 Atomic orbital electron populations 1.22475 0.87695 1.02342 1.00328 1.61886 1.07757 1.12940 1.43477 1.21666 0.99926 0.87890 0.94662 1.22295 1.00153 0.95980 0.98132 1.22998 0.96675 1.03247 0.98150 1.22979 1.04152 0.91725 1.03325 1.22208 1.00434 0.92697 0.90652 1.22025 1.00058 0.93833 0.95467 0.90838 1.22391 1.00012 0.94707 0.96751 1.23682 1.00498 0.97097 0.89287 1.64896 1.46663 1.09645 1.02687 1.22443 0.98503 0.88181 0.98418 1.19170 0.99323 0.97536 0.84969 0.87122 1.28991 0.92710 0.90676 0.94520 1.81067 1.10073 1.11472 1.12730 1.19271 0.97876 0.90222 0.94563 1.21961 1.27096 1.01698 1.13594 0.93111 1.25797 0.99044 0.98494 0.95116 1.70806 1.25278 1.38123 1.20202 0.83575 0.75508 0.75972 0.75543 1.21202 1.20688 1.21494 1.22891 0.94019 0.94944 0.96991 0.95773 0.91362 0.91119 0.94627 0.90594 0.87468 0.88717 0.88927 0.88897 0.88917 0.94882 0.90146 0.91380 0.90616 0.89820 0.93372 0.94293 0.88794 0.96740 0.95149 0.92077 0.93711 0.90252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.16 60.07 0.55 0.71 16 2 N -0.54 -4.73 4.63 -242.92 -1.12 -5.85 16 3 C 0.09 0.67 5.24 -3.82 -0.02 0.65 16 4 C -0.15 -1.08 5.68 -90.61 -0.51 -1.59 16 5 C -0.17 -1.22 10.18 -26.72 -0.27 -1.49 16 6 C -0.18 -1.15 10.25 -26.73 -0.27 -1.43 16 7 C 0.07 0.61 4.06 -3.83 -0.02 0.60 16 8 C -0.09 -0.98 2.94 -89.26 -0.26 -1.25 16 9 H 0.07 0.76 6.32 -51.93 -0.33 0.43 16 10 C -0.10 -1.23 6.48 -24.87 -0.16 -1.39 16 11 C 0.02 0.33 4.35 -1.90 -0.01 0.32 16 12 N -0.51 -7.24 5.40 -230.45 -1.24 -8.49 16 13 C 0.05 0.83 4.71 -3.82 -0.02 0.81 16 14 C 0.01 0.23 2.29 -93.41 -0.21 0.01 16 15 H 0.11 2.06 8.14 -51.93 -0.42 1.64 16 16 C 0.25 5.11 9.68 -20.76 -0.20 4.91 16 17 N -0.48 -10.45 17.37 42.16 0.73 -9.72 16 18 C 0.02 0.45 3.73 -27.88 -0.10 0.34 16 19 C -0.61 -16.46 8.60 -34.44 -0.30 -16.75 16 20 H 0.05 1.39 7.59 -52.48 -0.40 0.99 16 21 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 22 N -0.91 -26.87 13.65 55.43 0.76 -26.12 16 23 Si 1.07 25.17 29.90 -169.99 -5.08 20.09 16 24 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 27 C 0.04 0.46 6.35 -2.75 -0.02 0.44 16 28 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.07 0.49 6.22 -51.93 -0.32 0.16 16 30 H 0.07 0.58 6.35 -51.93 -0.33 0.25 16 31 H 0.04 0.27 8.12 -51.93 -0.42 -0.15 16 32 H 0.08 0.60 7.66 -51.93 -0.40 0.20 16 33 H 0.11 0.81 6.36 -51.93 -0.33 0.48 16 34 H 0.09 0.66 8.03 -51.93 -0.42 0.24 16 35 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.03 0.28 8.12 -51.93 -0.42 -0.14 16 39 H 0.08 0.76 7.79 -51.93 -0.40 0.36 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.08 0.93 7.77 -51.93 -0.40 0.53 16 42 H 0.08 1.39 6.52 -51.93 -0.34 1.05 16 43 H 0.05 0.81 6.33 -51.93 -0.33 0.48 16 44 H 0.04 0.61 7.81 -51.93 -0.41 0.20 16 45 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 46 H 0.01 0.36 8.01 -51.93 -0.42 -0.06 16 47 H 0.03 0.70 8.01 -51.93 -0.42 0.29 16 48 H 0.27 7.79 7.22 -40.82 -0.29 7.50 16 49 H 0.04 0.51 7.57 -51.93 -0.39 0.12 16 50 H 0.08 0.82 7.69 -51.93 -0.40 0.42 16 LS Contribution 387.90 15.07 5.85 5.85 Total: -1.00 -29.97 387.90 -10.96 -40.93 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -8.92 Total: -2.06 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -1.93 Total: -14.63 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: -0.88 Total: -50.17 kcal Atomic # 14 Polarization: 25.17 SS G_CDS: -5.08 Total: 20.09 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.97 -10.96 -40.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355354565.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.461 kcal (2) G-P(sol) polarization free energy of solvation -29.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds