Wall clock time and date at job start Tue Mar 31 2020 08:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36882 * 126.39776 * 2 1 4 4 C 1.34664 * 106.81458 * 180.25828 * 3 2 1 5 5 N 1.34129 * 108.02379 * 359.74005 * 4 3 2 6 6 C 1.30495 * 109.25279 * 0.02562 * 5 4 3 7 7 C 1.50702 * 125.64717 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.50191 * 179.97438 * 7 6 5 9 9 C 1.53123 * 109.50463 * 300.02935 * 7 6 5 10 10 C 1.53116 * 109.15727 * 177.59534 * 9 7 6 11 11 C 1.53034 * 109.28080 * 302.34191 * 10 9 7 12 12 N 1.46844 * 109.52461 * 59.18258 * 11 10 9 13 13 C 1.46891 * 111.00266 * 174.15984 * 12 11 10 14 14 C 1.53003 * 109.46974 * 94.42942 * 13 12 11 15 15 C 1.53004 * 109.46883 * 66.28951 * 14 13 12 16 16 C 1.52997 * 109.47532 * 306.28725 * 14 13 12 17 17 C 1.52997 * 109.47287 * 186.28402 * 14 13 12 18 18 C 1.50696 * 109.47471 * 180.02562 * 17 14 13 19 19 H 1.08006 * 120.00156 * 359.97438 * 18 17 14 20 20 C 1.37880 * 120.00226 * 180.27982 * 18 17 14 21 21 N 1.31513 * 120.00034 * 359.72331 * 20 18 17 22 22 Si 1.86801 * 120.00102 * 179.72452 * 20 18 17 23 23 H 1.48507 * 109.47063 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47245 * 119.99675 * 22 20 18 25 25 H 1.48499 * 109.47063 * 240.00055 * 22 20 18 26 26 C 1.46854 * 111.19623 * 298.26057 * 12 11 10 27 27 H 1.09003 * 109.47132 * 270.18447 * 1 2 3 28 28 H 1.08995 * 109.47403 * 30.18609 * 1 2 3 29 29 H 1.09005 * 109.47524 * 150.18833 * 1 2 3 30 30 H 1.07997 * 126.59037 * 359.97438 * 3 2 1 31 31 H 1.08005 * 125.99029 * 179.72699 * 4 3 2 32 32 H 1.08999 * 109.52172 * 57.68636 * 9 7 6 33 33 H 1.08999 * 109.51812 * 297.49810 * 9 7 6 34 34 H 1.09008 * 109.49848 * 182.40333 * 10 9 7 35 35 H 1.08998 * 109.53864 * 62.30872 * 10 9 7 36 36 H 1.09002 * 109.46206 * 299.16403 * 11 10 9 37 37 H 1.09003 * 109.46278 * 179.19919 * 11 10 9 38 38 H 1.09003 * 109.47288 * 334.43490 * 13 12 11 39 39 H 1.08994 * 109.47432 * 214.42977 * 13 12 11 40 40 H 1.08997 * 109.47209 * 137.22220 * 15 14 13 41 41 H 1.09005 * 109.46668 * 257.22073 * 15 14 13 42 42 H 1.09001 * 109.47479 * 17.21774 * 15 14 13 43 43 H 1.09003 * 109.46934 * 343.93245 * 16 14 13 44 44 H 1.09005 * 109.47190 * 103.92821 * 16 14 13 45 45 H 1.08994 * 109.47452 * 223.93229 * 16 14 13 46 46 H 1.09000 * 109.47157 * 60.00387 * 17 14 13 47 47 H 1.09006 * 109.47544 * 300.00349 * 17 14 13 48 48 H 0.96997 * 120.00510 * 180.02562 * 21 20 18 49 49 H 1.08998 * 109.45594 * 181.75280 * 26 12 11 50 50 H 1.08993 * 109.46121 * 301.72434 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 3.5460 0.6504 -0.0058 5 7 3.5095 -0.6904 -0.0035 6 6 2.2663 -1.0870 0.0030 7 6 1.8018 -2.5206 0.0070 8 1 0.7121 -2.5501 0.0127 9 6 2.3253 -3.2311 -1.2444 10 6 1.8997 -4.7013 -1.2025 11 6 2.4350 -5.3461 0.0779 12 7 1.9051 -4.6312 1.2460 13 6 2.2862 -5.3062 2.4938 14 6 3.5645 -4.6727 3.0465 15 6 3.2771 -3.2310 3.4705 16 6 4.6464 -4.6801 1.9647 17 6 4.0483 -5.4734 4.2572 18 6 5.3070 -4.8491 4.8019 19 1 5.7209 -3.9694 4.3314 20 6 5.9339 -5.4045 5.8972 21 7 5.4303 -6.4760 6.4698 22 14 7.4985 -4.6351 6.5678 23 1 7.8554 -3.4473 5.7510 24 1 7.2815 -4.2203 7.9770 25 1 8.6026 -5.6263 6.5079 26 6 2.3400 -3.2286 1.2524 27 1 -0.3633 0.0033 1.0277 28 1 -0.3634 0.8883 -0.5167 29 1 -0.3634 -0.8917 -0.5109 30 1 1.9613 2.1345 -0.0004 31 1 4.4368 1.2610 -0.0116 32 1 3.4131 -3.1673 -1.2712 33 1 1.9096 -2.7567 -2.1333 34 1 2.3056 -5.2224 -2.0696 35 1 0.8117 -4.7664 -1.2154 36 1 3.5238 -5.2937 0.0831 37 1 2.1216 -6.3894 0.1177 38 1 2.4610 -6.3638 2.2961 39 1 1.4836 -5.2009 3.2237 40 1 3.7603 -3.0302 4.4266 41 1 3.6652 -2.5463 2.7163 42 1 2.2009 -3.0892 3.5703 43 1 4.3629 -5.3726 1.1721 44 1 4.7528 -3.6776 1.5504 45 1 5.5942 -4.9955 2.4009 46 1 4.2531 -6.5005 3.9552 47 1 3.2775 -5.4681 5.0279 48 1 5.8711 -6.8666 7.2405 49 1 1.9575 -2.7339 2.1452 50 1 3.4291 -3.1861 1.2521 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373230968.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:29 Heat of formation + Delta-G solvation = 95.718509 kcal Electronic energy + Delta-G solvation = -27013.379132 eV Core-core repulsion = 23656.962064 eV Total energy + Delta-G solvation = -3356.417068 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.15294 -39.97652 -36.17264 -34.06102 -33.15294 -32.24794 -31.00493 -28.68025 -27.30725 -27.02684 -26.62509 -26.49427 -23.52802 -22.73681 -21.96705 -21.42916 -19.99772 -18.96399 -18.13926 -17.16479 -16.07758 -15.80269 -15.32399 -15.17960 -14.69251 -14.66816 -14.22492 -13.94466 -13.89931 -13.57505 -13.18113 -13.03748 -12.96682 -12.84611 -12.56644 -12.43793 -12.09326 -11.98449 -11.37086 -11.14568 -10.87383 -10.80541 -10.62436 -10.55399 -10.49728 -10.32890 -10.28574 -9.96511 -9.82241 -9.63581 -9.59638 -9.58497 -9.12933 -8.91642 -8.33023 -8.29343 -7.53964 -5.93658 -3.93368 2.01909 2.71140 3.20284 3.34556 3.42534 3.47379 4.20928 4.50883 4.51306 4.56298 4.74552 4.85441 4.97164 5.01390 5.12209 5.18802 5.29460 5.41879 5.46671 5.49338 5.61285 5.68145 5.70978 5.77935 5.83587 5.90624 5.94407 6.04832 6.12454 6.22818 6.26145 6.29707 6.40237 6.44060 6.51333 6.58275 6.59456 6.77281 6.81687 6.85798 7.12593 7.14231 7.29042 7.39780 7.54107 7.59974 7.75457 7.88380 8.05891 8.17423 8.51459 9.12689 9.69304 11.17624 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.015774 B = 0.004201 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.702890 B = 6663.720364 C = 7687.254993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.461 5.461 3 C -0.069 4.069 4 C -0.026 4.026 5 N -0.482 5.482 6 C 0.222 3.778 7 C -0.003 4.003 8 H 0.080 0.920 9 C -0.106 4.106 10 C -0.113 4.113 11 C 0.034 3.966 12 N -0.535 5.535 13 C 0.064 3.936 14 C -0.085 4.085 15 C -0.144 4.144 16 C -0.156 4.156 17 C 0.038 3.962 18 C -0.506 4.506 19 H 0.059 0.941 20 C 0.055 3.945 21 N -0.897 5.897 22 Si 0.885 3.115 23 H -0.273 1.273 24 H -0.286 1.286 25 H -0.285 1.285 26 C 0.027 3.973 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.171 0.829 31 H 0.167 0.833 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.052 0.948 42 H 0.041 0.959 43 H 0.050 0.950 44 H 0.051 0.949 45 H 0.071 0.929 46 H 0.013 0.987 47 H 0.014 0.986 48 H 0.258 0.742 49 H 0.092 0.908 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.806 10.945 -16.317 22.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.144 5.144 3 C -0.201 4.201 4 C -0.175 4.175 5 N -0.200 5.200 6 C -0.041 4.041 7 C -0.023 4.023 8 H 0.099 0.901 9 C -0.144 4.144 10 C -0.151 4.151 11 C -0.093 4.093 12 N -0.258 5.258 13 C -0.063 4.063 14 C -0.087 4.087 15 C -0.200 4.200 16 C -0.212 4.212 17 C 0.000 4.000 18 C -0.544 4.544 19 H 0.077 0.923 20 C -0.145 4.145 21 N -0.537 5.537 22 Si 0.713 3.287 23 H -0.197 1.197 24 H -0.212 1.212 25 H -0.212 1.212 26 C -0.101 4.101 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.106 0.894 30 H 0.188 0.812 31 H 0.184 0.816 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.090 0.910 46 H 0.032 0.968 47 H 0.033 0.967 48 H 0.068 0.932 49 H 0.110 0.890 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.775 10.323 -16.219 22.545 hybrid contribution 0.947 1.123 0.616 1.593 sum -10.827 11.446 -15.604 22.175 Atomic orbital electron populations 1.22031 0.77044 1.04393 1.03743 1.45315 1.07408 1.06708 1.54993 1.22618 0.91513 0.92344 1.13649 1.22304 0.96285 0.91395 1.07487 1.70252 1.18432 1.11667 1.19666 1.23293 0.85706 0.90633 1.04464 1.19737 0.99869 0.84871 0.97864 0.90132 1.21545 1.01946 0.95156 0.95769 1.21574 1.01223 0.95013 0.97313 1.22547 0.98937 0.97539 0.90312 1.62192 1.59214 1.01902 1.02531 1.22438 0.96588 0.97286 0.90007 1.21120 0.93640 0.96177 0.97732 1.22679 0.99035 0.95878 1.02438 1.22595 1.00865 1.00083 0.97661 1.19163 0.95753 0.94430 0.90660 1.21273 1.08879 1.11939 1.12324 0.92325 1.25005 0.97440 0.95064 0.97010 1.69974 1.39940 1.21438 1.22356 0.86638 0.83798 0.79374 0.78850 1.19728 1.21185 1.21174 1.23593 1.01818 0.88767 0.95877 0.90422 0.89823 0.89428 0.81213 0.81557 0.90893 0.92659 0.91687 0.91626 0.92582 0.91222 0.91850 0.91344 0.91644 0.92952 0.94036 0.93178 0.93065 0.91003 0.96827 0.96746 0.93247 0.88962 0.89508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.48 10.83 59.85 0.65 1.13 16 2 N -0.46 -5.11 3.15 -121.28 -0.38 -5.49 16 3 C -0.07 -0.74 11.58 -16.56 -0.19 -0.93 16 4 C -0.03 -0.34 11.87 -17.81 -0.21 -0.56 16 5 N -0.48 -7.53 11.25 -10.82 -0.12 -7.66 16 6 C 0.22 3.03 6.41 -155.42 -1.00 2.03 16 7 C 0.00 -0.03 2.68 -91.69 -0.25 -0.28 16 8 H 0.08 0.92 6.73 -51.93 -0.35 0.57 16 9 C -0.11 -1.27 5.27 -26.61 -0.14 -1.41 16 10 C -0.11 -1.27 6.09 -26.65 -0.16 -1.43 16 11 C 0.03 0.46 4.87 -3.84 -0.02 0.44 16 12 N -0.54 -8.04 4.86 -234.68 -1.14 -9.18 16 13 C 0.06 1.12 4.81 -3.83 -0.02 1.10 16 14 C -0.09 -1.72 0.53 -154.51 -0.08 -1.80 16 15 C -0.14 -2.82 6.97 37.16 0.26 -2.56 16 16 C -0.16 -3.04 7.43 37.16 0.28 -2.77 16 17 C 0.04 0.95 3.92 -27.89 -0.11 0.84 16 18 C -0.51 -14.00 6.69 -34.44 -0.23 -14.23 16 19 H 0.06 1.61 6.85 -52.48 -0.36 1.25 16 20 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 21 N -0.90 -26.99 13.29 55.43 0.74 -26.26 16 22 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 23 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 C 0.03 0.40 2.57 -3.83 -0.01 0.40 16 27 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.53 7.05 -51.93 -0.37 0.16 16 30 H 0.17 1.23 8.06 -52.49 -0.42 0.81 16 31 H 0.17 1.79 8.06 -52.48 -0.42 1.37 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.83 4.78 -51.93 -0.25 0.58 16 37 H 0.07 0.90 7.91 -51.93 -0.41 0.49 16 38 H 0.06 1.11 7.57 -51.93 -0.39 0.72 16 39 H 0.07 1.21 8.01 -51.93 -0.42 0.80 16 40 H 0.06 1.46 6.52 -51.93 -0.34 1.12 16 41 H 0.05 1.00 5.17 -51.93 -0.27 0.73 16 42 H 0.04 0.75 5.93 -51.93 -0.31 0.44 16 43 H 0.05 0.88 4.22 -51.93 -0.22 0.66 16 44 H 0.05 0.98 5.34 -51.93 -0.28 0.70 16 45 H 0.07 1.59 6.55 -51.93 -0.34 1.25 16 46 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 49 H 0.09 1.50 4.72 -51.93 -0.24 1.25 16 50 H 0.09 1.50 2.94 -51.93 -0.15 1.34 16 LS Contribution 361.23 15.07 5.44 5.44 Total: -1.00 -31.95 361.23 -9.87 -41.82 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -8.06 Total: 2.92 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: -1.33 Total: -18.53 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: -0.91 Total: -48.59 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.95 -9.87 -41.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373230968.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.539 kcal (2) G-P(sol) polarization free energy of solvation -31.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds