Wall clock time and date at job start Tue Mar 31 2020 08:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46716 * 2 1 4 4 C 1.52997 * 109.47273 * 65.00389 * 3 2 1 5 5 C 1.52991 * 109.47137 * 185.00169 * 4 3 2 6 6 N 1.46501 * 109.46645 * 185.00281 * 3 2 1 7 7 C 1.34951 * 126.03694 * 274.99588 * 6 3 2 8 8 C 1.35315 * 107.74492 * 180.02562 * 7 6 3 9 9 C 1.39872 * 107.92119 * 0.02562 * 8 7 6 10 10 C 1.50702 * 125.89778 * 180.02562 * 9 8 7 11 11 N 1.46899 * 109.47358 * 95.00024 * 10 9 8 12 12 C 1.46849 * 110.99741 * 45.78693 * 11 10 9 13 13 C 1.53033 * 109.52136 * 185.83957 * 12 11 10 14 14 C 1.53118 * 109.28081 * 300.82285 * 13 12 11 15 15 C 1.50701 * 109.57681 * 177.59066 * 14 13 12 16 16 H 1.08007 * 119.99678 * 245.71748 * 15 14 13 17 17 C 1.37874 * 120.00236 * 65.71255 * 15 14 13 18 18 N 1.31510 * 119.99868 * 9.55682 * 17 15 14 19 19 Si 1.86797 * 120.00163 * 189.55276 * 17 15 14 20 20 H 1.48505 * 109.46787 * 94.99312 * 19 17 15 21 21 H 1.48499 * 109.47415 * 214.98957 * 19 17 15 22 22 H 1.48495 * 109.47396 * 334.99552 * 19 17 15 23 23 C 1.53118 * 109.16016 * 57.65324 * 14 13 12 24 24 C 1.46840 * 111.00153 * 169.99881 * 11 10 9 25 25 N 1.30838 * 108.20361 * 359.97438 * 9 8 7 26 26 H 1.09000 * 109.47183 * 299.99438 * 1 2 3 27 27 H 1.08994 * 109.47526 * 59.99920 * 1 2 3 28 28 H 1.09005 * 109.47020 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47183 * 240.00562 * 2 1 3 30 30 H 1.08994 * 109.47526 * 120.00080 * 2 1 3 31 31 H 1.09002 * 109.46987 * 305.00268 * 3 2 1 32 32 H 1.09004 * 109.46932 * 304.99767 * 4 3 2 33 33 H 1.09001 * 109.47279 * 64.99714 * 4 3 2 34 34 H 1.09004 * 109.46882 * 299.99629 * 5 4 3 35 35 H 1.09001 * 109.47407 * 59.99624 * 5 4 3 36 36 H 1.08997 * 109.47158 * 179.97438 * 5 4 3 37 37 H 1.07997 * 126.12288 * 0.27195 * 7 6 3 38 38 H 1.08001 * 126.03785 * 179.97438 * 8 7 6 39 39 H 1.08999 * 109.46690 * 215.00016 * 10 9 8 40 40 H 1.09003 * 109.47008 * 334.99894 * 10 9 8 41 41 H 1.09002 * 109.46641 * 305.85802 * 12 11 10 42 42 H 1.09004 * 109.46039 * 65.82792 * 12 11 10 43 43 H 1.08998 * 109.50830 * 180.88087 * 13 12 11 44 44 H 1.09007 * 109.53617 * 60.78270 * 13 12 11 45 45 H 1.09000 * 109.52481 * 297.74738 * 14 13 12 46 46 H 0.96998 * 120.00629 * 179.97438 * 18 17 15 47 47 H 1.09001 * 109.50493 * 182.40510 * 23 14 13 48 48 H 1.09003 * 109.53695 * 62.30961 * 23 14 13 49 49 H 1.09003 * 109.46439 * 294.17849 * 24 11 10 50 50 H 1.09002 * 109.46215 * 54.15214 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.6352 2.1266 1.3074 5 6 2.0352 3.6024 1.2558 6 7 3.4999 1.4443 -0.1205 7 6 4.3805 1.3187 0.8945 8 6 5.6261 1.3701 0.3685 9 6 5.5027 1.5332 -1.0152 10 6 6.6407 1.6384 -1.9975 11 7 6.9195 0.3136 -2.5677 12 6 5.6768 -0.3600 -2.9658 13 6 5.9913 -1.7877 -3.4181 14 6 6.9686 -1.7412 -4.5959 15 6 7.3289 -3.1451 -5.0087 16 1 8.3419 -3.5000 -4.8886 17 6 6.3655 -3.9763 -5.5397 18 7 5.1851 -3.4937 -5.8609 19 14 6.7370 -5.7880 -5.8028 20 1 6.2584 -6.5664 -4.6322 21 1 6.0458 -6.2621 -7.0286 22 1 8.2020 -5.9757 -5.9565 23 6 8.2342 -0.9924 -4.1695 24 6 7.8547 0.4123 -3.6954 25 7 4.2286 1.5777 -1.3094 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6052 1.9816 -0.8418 32 1 0.5562 2.0470 1.4402 33 1 2.1408 1.6420 2.1426 34 1 3.1141 3.6820 1.1230 35 1 1.5296 4.0870 0.4206 36 1 1.7464 4.0898 2.1870 37 1 4.1348 1.1949 1.9388 38 1 6.5521 1.2986 0.9198 39 1 6.3683 2.3279 -2.7965 40 1 7.5294 2.0081 -1.4858 41 1 4.9922 -0.3900 -2.1181 42 1 5.2139 0.1875 -3.7870 43 1 5.0709 -2.2823 -3.7283 44 1 6.4413 -2.3405 -2.5934 45 1 6.5038 -1.2229 -5.4347 46 1 4.5074 -4.0783 -6.2348 47 1 8.9163 -0.9188 -5.0165 48 1 8.7205 -1.5319 -3.3566 49 1 7.3817 0.9561 -4.5131 50 1 8.7522 0.9430 -3.3776 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397274501.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:44:38 Heat of formation + Delta-G solvation = 61.567852 kcal Electronic energy + Delta-G solvation = -25918.258423 eV Core-core repulsion = 22560.360471 eV Total energy + Delta-G solvation = -3357.897952 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.25923 -38.17972 -37.00707 -33.99732 -32.25617 -31.84834 -30.49180 -29.97298 -29.57612 -27.42177 -25.77305 -24.20396 -23.22530 -22.07465 -21.91286 -21.40922 -19.78544 -19.33369 -18.44222 -17.23487 -16.30520 -15.59880 -15.11617 -15.03957 -14.55587 -14.43116 -14.30591 -14.11036 -13.65790 -13.60030 -13.08363 -12.87317 -12.67218 -12.54779 -12.47089 -12.26716 -12.09137 -11.93383 -11.68043 -11.58074 -11.37168 -11.25597 -11.09091 -10.94783 -10.85997 -10.70448 -10.45451 -10.26003 -10.11816 -9.97545 -9.33941 -9.10410 -8.77610 -8.61470 -8.38972 -8.20909 -7.61765 -5.92009 -3.92548 2.02949 2.53589 2.95303 3.36351 3.43245 3.46667 4.16635 4.48333 4.52332 4.63945 4.69029 4.78107 4.85249 4.89020 5.02362 5.05777 5.23395 5.28267 5.39984 5.41725 5.48681 5.53442 5.63877 5.72937 5.77556 5.84078 5.85181 5.88113 5.90165 6.00331 6.03625 6.07075 6.19525 6.28079 6.40976 6.46394 6.70899 6.74719 6.84627 6.95399 7.16000 7.17147 7.23781 7.48962 7.70097 7.78698 7.90978 7.95452 8.12838 8.15715 8.57131 9.11564 9.69896 11.17130 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.015636 B = 0.003595 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.290361 B = 7786.454135 C = 9147.020517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.138 4.138 3 C 0.163 3.837 4 C -0.135 4.135 5 C -0.154 4.154 6 N -0.365 5.365 7 C 0.047 3.953 8 C -0.255 4.255 9 C 0.085 3.915 10 C 0.132 3.868 11 N -0.528 5.528 12 C 0.061 3.939 13 C -0.097 4.097 14 C 0.046 3.954 15 C -0.511 4.511 16 H 0.054 0.946 17 C 0.062 3.938 18 N -0.889 5.889 19 Si 0.885 3.115 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.274 1.274 23 C -0.105 4.105 24 C 0.060 3.940 25 N -0.286 5.286 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.165 0.835 38 H 0.144 0.856 39 H 0.041 0.959 40 H 0.087 0.913 41 H 0.061 0.939 42 H 0.022 0.978 43 H 0.071 0.929 44 H 0.042 0.958 45 H 0.027 0.973 46 H 0.258 0.742 47 H 0.051 0.949 48 H 0.056 0.944 49 H 0.025 0.975 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.247 13.352 16.185 22.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.177 4.177 3 C 0.061 3.939 4 C -0.173 4.173 5 C -0.212 4.212 6 N -0.147 5.147 7 C -0.098 4.098 8 C -0.285 4.285 9 C -0.081 4.081 10 C 0.003 3.997 11 N -0.254 5.254 12 C -0.066 4.066 13 C -0.135 4.135 14 C 0.028 3.972 15 C -0.549 4.549 16 H 0.072 0.928 17 C -0.139 4.139 18 N -0.528 5.528 19 Si 0.713 3.287 20 H -0.208 1.208 21 H -0.215 1.215 22 H -0.199 1.199 23 C -0.143 4.143 24 C -0.067 4.067 25 N -0.108 5.108 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.118 0.882 32 H 0.106 0.894 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.183 0.817 38 H 0.162 0.838 39 H 0.059 0.941 40 H 0.105 0.895 41 H 0.079 0.921 42 H 0.040 0.960 43 H 0.089 0.911 44 H 0.061 0.939 45 H 0.045 0.955 46 H 0.068 0.932 47 H 0.070 0.930 48 H 0.075 0.925 49 H 0.043 0.957 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.211 13.141 15.549 21.952 hybrid contribution 0.234 -0.724 -0.028 0.761 sum -7.977 12.417 15.520 21.417 Atomic orbital electron populations 1.21786 0.94399 1.02525 1.02020 1.21978 0.96665 0.95263 1.03755 1.21347 0.75340 0.97438 0.99748 1.21985 1.02614 0.96467 0.96278 1.21789 1.02230 0.95255 1.01908 1.48716 1.05655 1.55947 1.04362 1.22306 0.89871 1.02812 0.94858 1.21318 0.97474 1.15714 0.93984 1.22119 0.92447 0.99091 0.94488 1.20473 0.93026 0.92011 0.94204 1.62144 1.14467 1.16442 1.32357 1.22263 0.89484 0.96911 0.97981 1.21572 1.01628 0.91962 0.98365 1.18697 0.90398 0.94886 0.93265 1.21197 0.95538 0.97492 1.40686 0.92754 1.24963 0.95397 0.98307 0.95205 1.69979 1.05005 1.34822 1.43018 0.86698 0.78367 0.86202 0.77448 1.20815 1.21457 1.19920 1.21661 1.00138 0.93250 0.99216 1.22141 0.94724 0.99140 0.90713 1.77432 1.04315 1.24337 1.04744 0.92345 0.92254 0.91936 0.90468 0.91332 0.88232 0.89351 0.90995 0.92310 0.92495 0.92293 0.81730 0.83793 0.94128 0.89499 0.92113 0.95957 0.91097 0.93869 0.95477 0.93233 0.93048 0.92545 0.95660 0.92271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.67 37.16 0.36 -0.78 16 2 C -0.14 -1.38 5.73 -26.73 -0.15 -1.53 16 3 C 0.16 1.65 2.79 -67.93 -0.19 1.46 16 4 C -0.14 -0.95 4.95 -26.74 -0.13 -1.09 16 5 C -0.15 -1.16 9.77 37.15 0.36 -0.80 16 6 N -0.36 -4.79 3.12 -54.86 -0.17 -4.96 16 7 C 0.05 0.56 9.83 -17.22 -0.17 0.39 16 8 C -0.26 -3.51 10.74 -40.01 -0.43 -3.93 16 9 C 0.08 1.36 5.19 -82.40 -0.43 0.94 16 10 C 0.13 2.12 5.84 -4.98 -0.03 2.09 16 11 N -0.53 -10.09 4.80 -236.12 -1.13 -11.22 16 12 C 0.06 1.33 4.88 -3.83 -0.02 1.31 16 13 C -0.10 -2.42 5.19 -26.65 -0.14 -2.56 16 14 C 0.05 1.20 2.03 -91.65 -0.19 1.01 16 15 C -0.51 -14.51 8.48 -34.44 -0.29 -14.81 16 16 H 0.05 1.53 7.77 -52.48 -0.41 1.12 16 17 C 0.06 1.79 5.23 -17.82 -0.09 1.69 16 18 N -0.89 -26.42 12.20 55.43 0.68 -25.74 16 19 Si 0.88 21.89 29.55 -169.99 -5.02 16.86 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 22 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 23 C -0.10 -2.29 5.32 -26.65 -0.14 -2.43 16 24 C 0.06 1.14 5.42 -3.84 -0.02 1.12 16 25 N -0.29 -4.78 11.28 33.67 0.38 -4.40 16 26 H 0.06 0.34 6.46 -51.93 -0.34 0.01 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.09 0.48 6.34 -51.93 -0.33 0.15 16 33 H 0.07 0.46 6.90 -51.93 -0.36 0.10 16 34 H 0.06 0.55 7.11 -51.93 -0.37 0.18 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.17 1.38 7.14 -52.49 -0.37 1.01 16 38 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 39 H 0.04 0.66 8.08 -51.93 -0.42 0.24 16 40 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.06 1.32 5.79 -51.93 -0.30 1.02 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 1.96 7.00 -51.93 -0.36 1.60 16 44 H 0.04 1.09 8.14 -51.92 -0.42 0.67 16 45 H 0.03 0.78 8.09 -51.93 -0.42 0.36 16 46 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 47 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 49 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 50 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 LS Contribution 384.34 15.07 5.79 5.79 Total: -1.00 -31.61 384.34 -10.33 -41.94 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -9.15 Total: -0.35 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -1.70 Total: -17.92 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: -0.25 Total: -46.32 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.61 -10.33 -41.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397274501.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.505 kcal (2) G-P(sol) polarization free energy of solvation -31.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds