Wall clock time and date at job start Tue Mar 31 2020 08:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47464 * 2 1 4 4 C 1.53003 * 109.47088 * 295.00249 * 3 2 1 5 5 N 1.46495 * 109.47037 * 180.02562 * 4 3 2 6 6 C 1.36937 * 120.00255 * 270.27032 * 5 4 3 7 7 H 1.08000 * 120.00138 * 143.50919 * 6 5 4 8 8 C 1.38814 * 119.99994 * 323.52179 * 6 5 4 9 9 N 1.31619 * 120.00156 * 157.10445 * 8 6 5 10 10 Si 1.86802 * 119.99845 * 337.10206 * 8 6 5 11 11 H 1.48504 * 109.47148 * 95.31562 * 10 8 6 12 12 H 1.48500 * 109.47202 * 215.31873 * 10 8 6 13 13 H 1.48504 * 109.47157 * 335.31933 * 10 8 6 14 14 C 1.46508 * 120.00241 * 90.00348 * 5 4 3 15 15 C 1.52994 * 117.49943 * 183.44539 * 14 5 4 16 16 C 1.52996 * 117.50094 * 114.81776 * 14 5 4 17 17 C 1.53003 * 109.47386 * 120.00286 * 2 1 3 18 18 C 1.52998 * 109.47006 * 64.99548 * 17 2 1 19 19 N 1.46903 * 109.46695 * 180.02562 * 18 17 2 20 20 C 1.46902 * 110.99849 * 190.00022 * 19 18 17 21 21 C 1.47197 * 109.47145 * 163.78341 * 20 19 18 22 22 N 7.12126 * 105.54152 * 143.87142 * 2 1 3 23 23 C 1.46900 * 111.00264 * 66.04930 * 19 18 17 24 24 C 1.53001 * 117.49628 * 261.13028 * 23 19 18 25 25 C 1.52998 * 117.49748 * 192.47206 * 23 19 18 26 26 H 1.08998 * 109.47243 * 59.99495 * 1 2 3 27 27 H 1.08998 * 109.47719 * 180.02562 * 1 2 3 28 28 H 1.09010 * 109.46658 * 300.00245 * 1 2 3 29 29 H 1.08998 * 109.47246 * 240.00020 * 2 1 3 30 30 H 1.09006 * 109.47394 * 175.00459 * 3 2 1 31 31 H 1.09000 * 109.47470 * 54.99765 * 3 2 1 32 32 H 1.08995 * 109.47258 * 59.99675 * 4 3 2 33 33 H 1.09004 * 109.47224 * 299.99760 * 4 3 2 34 34 H 0.97008 * 119.99785 * 179.97438 * 9 8 6 35 35 H 1.08996 * 115.54343 * 329.14788 * 14 5 4 36 36 H 1.09005 * 117.50069 * 359.97438 * 15 14 5 37 37 H 1.08998 * 117.50204 * 145.01982 * 15 14 5 38 38 H 1.08996 * 117.49591 * 214.97770 * 16 14 5 39 39 H 1.09001 * 117.50108 * 359.97438 * 16 14 5 40 40 H 1.08993 * 109.47157 * 184.99861 * 17 2 1 41 41 H 1.09005 * 109.46640 * 304.99806 * 17 2 1 42 42 H 1.08998 * 109.47050 * 299.99855 * 18 17 2 43 43 H 1.08995 * 109.47102 * 60.00429 * 18 17 2 44 44 H 1.09002 * 109.47200 * 283.78291 * 20 19 18 45 45 H 1.08999 * 109.47084 * 43.78315 * 20 19 18 46 46 H 1.09001 * 115.55372 * 46.79557 * 23 19 18 47 47 H 1.09007 * 117.49870 * 359.97438 * 24 23 19 48 48 H 1.08996 * 117.50147 * 145.02311 * 24 23 19 49 49 H 1.09001 * 117.49635 * 214.97239 * 25 23 19 50 50 H 1.08996 * 117.50096 * 359.97234 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6353 2.1265 -1.3073 5 7 2.1242 3.5075 -1.3076 6 6 1.3419 4.5109 -0.8013 7 1 1.7952 5.3278 -0.2593 8 6 -0.0337 4.4781 -0.9843 9 7 -0.8227 5.1391 -0.1641 10 14 -0.7650 3.4957 -2.3949 11 1 -1.1608 2.1498 -1.9079 12 1 -1.9597 4.2021 -2.9230 13 1 0.2442 3.3542 -3.4751 14 6 3.4525 3.8143 -1.8442 15 6 3.9384 5.2614 -1.7428 16 6 3.5233 4.6870 -3.0988 17 6 2.0400 -0.7213 1.2492 18 6 1.6352 -2.1955 1.1879 19 7 2.1244 -2.8878 2.3876 20 6 1.9653 -4.3424 2.2577 21 6 2.7959 -5.0190 3.2671 22 7 3.4380 -5.5415 4.0452 23 6 1.4504 -2.3903 3.5943 24 6 2.1913 -1.3527 4.4402 25 6 2.0409 -2.7888 4.9484 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 3.1264 1.4437 0.0895 31 1 1.6055 1.9816 0.8418 32 1 0.5490 2.1253 -1.3969 33 1 2.0699 1.5875 -2.1492 34 1 -1.7840 5.1164 -0.2923 35 1 4.1963 3.0246 -1.7377 36 1 3.2697 5.9855 -1.2773 37 1 5.0021 5.4242 -1.5696 38 1 4.3140 4.4718 -3.8175 39 1 2.5816 5.0326 -3.5253 40 1 3.1263 -0.6444 1.2951 41 1 1.6054 -0.2618 2.1370 42 1 0.5489 -2.2723 1.1421 43 1 2.0698 -2.6550 0.3002 44 1 0.9193 -4.6085 2.4102 45 1 2.2780 -4.6546 1.2613 46 1 0.3663 -2.3014 3.5245 47 1 3.1790 -1.0396 4.1015 48 1 1.5945 -0.5815 4.9272 49 1 1.3452 -2.9616 5.7695 50 1 2.9291 -3.4205 4.9439 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411209894.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:48:49 Heat of formation + Delta-G solvation = 104.565964 kcal Electronic energy + Delta-G solvation = -25363.379129 eV Core-core repulsion = 22007.345715 eV Total energy + Delta-G solvation = -3356.033413 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.37692 -37.60649 -36.61993 -36.16647 -34.54702 -33.29588 -31.47223 -29.82332 -27.50931 -26.53390 -24.59109 -23.72349 -22.53813 -22.12609 -21.41795 -20.57821 -19.59048 -19.53787 -18.00917 -16.43394 -16.24736 -15.90634 -15.62840 -15.50778 -15.28381 -14.78414 -14.10474 -13.77324 -13.70826 -13.57966 -13.22433 -13.02540 -12.89097 -12.45160 -12.42764 -12.31428 -12.07134 -11.90594 -11.67894 -11.57518 -11.52112 -11.18858 -10.96136 -10.69892 -10.61373 -10.44467 -10.41811 -10.29108 -10.22701 -10.14523 -9.83961 -9.62063 -9.38668 -9.36176 -8.79094 -8.49704 -6.72174 -6.01753 -3.40610 2.31757 2.53638 3.25387 3.44473 3.45921 3.51147 3.56419 3.79601 4.49367 4.64528 4.68905 4.75310 4.79189 4.84793 4.90041 4.96005 5.02933 5.18213 5.26362 5.33148 5.37089 5.45779 5.50536 5.56265 5.67574 5.80507 5.81957 5.96426 5.97081 5.99324 6.02261 6.08136 6.10860 6.23637 6.27588 6.34264 6.43452 6.48025 6.54015 6.57488 6.60825 6.65150 6.74373 6.92126 6.94951 7.11512 7.12309 7.30303 8.04549 8.38130 8.99383 9.70483 10.10655 11.13461 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.018299 B = 0.003059 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.812399 B = 9149.972979 C = 9540.141307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.088 4.088 3 C -0.126 4.126 4 C 0.139 3.861 5 N -0.576 5.576 6 C -0.265 4.265 7 H 0.082 0.918 8 C 0.038 3.962 9 N -0.898 5.898 10 Si 0.871 3.129 11 H -0.280 1.280 12 H -0.304 1.304 13 H -0.269 1.269 14 C 0.122 3.878 15 C -0.190 4.190 16 C -0.226 4.226 17 C -0.106 4.106 18 C 0.060 3.940 19 N -0.511 5.511 20 C 0.147 3.853 21 C 0.221 3.779 22 N -0.434 5.434 23 C -0.001 4.001 24 C -0.152 4.152 25 C -0.182 4.182 26 H 0.059 0.941 27 H 0.045 0.955 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.037 0.963 34 H 0.263 0.737 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.045 0.955 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.119 0.881 46 H 0.095 0.905 47 H 0.103 0.897 48 H 0.098 0.902 49 H 0.094 0.906 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.568 -16.623 2.674 17.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.108 4.108 3 C -0.166 4.166 4 C 0.014 3.986 5 N -0.295 5.295 6 C -0.393 4.393 7 H 0.100 0.900 8 C -0.163 4.163 9 N -0.539 5.539 10 Si 0.702 3.298 11 H -0.208 1.208 12 H -0.232 1.232 13 H -0.194 1.194 14 C 0.013 3.987 15 C -0.228 4.228 16 C -0.267 4.267 17 C -0.144 4.144 18 C -0.067 4.067 19 N -0.236 5.236 20 C 0.017 3.983 21 C -0.097 4.097 22 N -0.112 5.112 23 C -0.109 4.109 24 C -0.189 4.189 25 C -0.220 4.220 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.108 0.892 36 H 0.120 0.880 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.064 0.936 43 H 0.098 0.902 44 H 0.101 0.899 45 H 0.137 0.863 46 H 0.113 0.887 47 H 0.121 0.879 48 H 0.117 0.883 49 H 0.112 0.888 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.819 -17.255 3.930 18.341 hybrid contribution -1.675 -0.307 -1.220 2.095 sum 3.144 -17.562 2.710 18.046 Atomic orbital electron populations 1.22000 0.95676 1.00430 1.02882 1.21115 0.95631 0.96959 0.97089 1.22120 0.99996 0.93114 1.01365 1.21223 0.98322 0.84574 0.94449 1.43723 1.14200 1.02726 1.68807 1.18748 0.88105 1.04142 1.28340 0.90018 1.25418 0.96338 0.97212 0.97304 1.69872 1.03787 1.44711 1.35554 0.87054 0.78289 0.79021 0.85468 1.20820 1.23193 1.19373 1.21127 0.89113 0.91781 0.96630 1.23052 0.99558 0.99190 1.00974 1.23379 1.01922 1.09674 0.91719 1.21613 1.01533 0.92503 0.98797 1.22296 0.98383 0.95602 0.90378 1.61671 1.57632 1.01261 1.03077 1.19487 0.96229 0.87732 0.94890 1.28967 0.93736 0.93177 0.93848 1.81210 1.09783 1.09827 1.10368 1.22486 0.95493 1.05388 0.87530 1.23057 1.02576 0.91851 1.01461 1.23203 1.03447 0.99563 0.95772 0.92231 0.93588 0.92515 0.91828 0.92880 0.91227 0.92461 0.94488 0.92743 0.89158 0.87973 0.90529 0.90899 0.89413 0.91353 0.91374 0.93633 0.90229 0.89938 0.86285 0.88742 0.87905 0.88323 0.88755 0.88413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 8.70 37.16 0.32 -1.84 16 2 C -0.09 -1.18 2.39 -90.62 -0.22 -1.39 16 3 C -0.13 -2.18 5.01 -26.73 -0.13 -2.31 16 4 C 0.14 2.84 4.32 -4.04 -0.02 2.82 16 5 N -0.58 -13.23 2.43 -165.67 -0.40 -13.64 16 6 C -0.26 -7.13 9.04 -15.06 -0.14 -7.26 16 7 H 0.08 2.39 6.74 -52.49 -0.35 2.03 16 8 C 0.04 1.05 5.30 -17.43 -0.09 0.96 16 9 N -0.90 -26.63 13.97 55.49 0.78 -25.85 16 10 Si 0.87 21.49 25.04 -169.99 -4.26 17.23 16 11 H -0.28 -6.47 5.63 56.52 0.32 -6.16 16 12 H -0.30 -7.72 7.11 56.52 0.40 -7.31 16 13 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 14 C 0.12 2.44 6.56 -67.93 -0.45 2.00 16 15 C -0.19 -3.61 9.80 -26.73 -0.26 -3.88 16 16 C -0.23 -4.31 10.36 -26.73 -0.28 -4.59 16 17 C -0.11 -1.18 4.52 -26.73 -0.12 -1.30 16 18 C 0.06 0.51 4.71 -3.82 -0.02 0.49 16 19 N -0.51 -4.29 4.59 -230.14 -1.06 -5.34 16 20 C 0.15 0.91 5.47 -6.61 -0.04 0.88 16 21 C 0.22 2.05 13.07 -20.76 -0.27 1.78 16 22 N -0.43 -5.23 17.81 42.16 0.75 -4.48 16 23 C 0.00 0.00 4.20 -67.71 -0.28 -0.29 16 24 C -0.15 -1.45 9.38 -26.69 -0.25 -1.70 16 25 C -0.18 -1.69 9.34 -26.69 -0.25 -1.94 16 26 H 0.06 1.00 5.55 -51.93 -0.29 0.71 16 27 H 0.05 0.52 6.56 -51.93 -0.34 0.18 16 28 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 32 H 0.06 1.27 1.70 -51.93 -0.09 1.18 16 33 H 0.04 0.69 8.07 -51.93 -0.42 0.27 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 36 H 0.10 2.20 6.40 -51.93 -0.33 1.87 16 37 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.82 6.65 -51.93 -0.35 0.47 16 42 H 0.05 0.37 6.54 -51.93 -0.34 0.03 16 43 H 0.08 0.58 7.86 -51.93 -0.41 0.17 16 44 H 0.08 0.37 8.05 -51.93 -0.42 -0.05 16 45 H 0.12 0.47 7.80 -51.93 -0.41 0.06 16 46 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 47 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 48 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.10 1.06 5.83 -51.93 -0.30 0.76 16 LS Contribution 387.76 15.07 5.84 5.84 Total: -1.00 -30.52 387.76 -9.59 -40.11 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -8.76 Total: 3.71 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -2.49 Total: -17.58 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: 0.07 Total: -49.31 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.26 Total: 17.23 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.52 -9.59 -40.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411209894.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.671 kcal (2) G-P(sol) polarization free energy of solvation -30.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds