Wall clock time and date at job start Tue Mar 31 2020 08:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35900 * 117.00265 * 2 1 4 4 C 1.38726 * 120.05752 * 179.97438 * 3 2 1 5 5 C 1.38149 * 119.94477 * 180.02562 * 4 3 2 6 6 C 1.38266 * 120.05411 * 0.28574 * 5 4 3 7 7 C 1.50696 * 119.94508 * 179.70262 * 6 5 4 8 8 C 1.52997 * 109.47496 * 89.99136 * 7 6 5 9 9 H 1.08995 * 109.47495 * 305.00551 * 8 7 6 10 10 C 1.53001 * 109.46916 * 65.00014 * 8 7 6 11 11 C 1.52997 * 109.47400 * 185.00121 * 8 7 6 12 12 N 1.46904 * 109.47311 * 175.00446 * 11 8 7 13 13 C 1.46903 * 110.99634 * 293.95231 * 12 11 8 14 14 C 1.46897 * 110.99795 * 170.00019 * 12 11 8 15 15 H 1.09000 * 109.47496 * 309.99448 * 14 12 11 16 16 C 1.53005 * 109.47056 * 70.00141 * 14 12 11 17 17 C 1.53004 * 109.46794 * 189.99522 * 14 12 11 18 18 C 1.50705 * 109.46937 * 65.00294 * 17 14 12 19 19 H 1.07996 * 119.99596 * 359.97438 * 18 17 14 20 20 C 1.37875 * 119.99710 * 180.02562 * 18 17 14 21 21 N 1.31516 * 119.99500 * 180.02562 * 20 18 17 22 22 Si 1.86792 * 120.00464 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47349 * 90.00136 * 22 20 18 24 24 H 1.48499 * 109.47470 * 210.00378 * 22 20 18 25 25 H 1.48503 * 109.46881 * 330.00298 * 22 20 18 26 26 C 1.38264 * 120.10762 * 359.44038 * 6 5 4 27 27 C 1.38144 * 120.05928 * 0.55731 * 26 6 5 28 28 H 1.08995 * 109.47128 * 59.99997 * 1 2 3 29 29 H 1.09000 * 109.47439 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47423 * 299.99641 * 1 2 3 31 31 H 1.08000 * 120.02799 * 0.02562 * 4 3 2 32 32 H 1.08002 * 119.97030 * 179.97438 * 5 4 3 33 33 H 1.08996 * 109.47057 * 209.99743 * 7 6 5 34 34 H 1.09005 * 109.46844 * 329.99277 * 7 6 5 35 35 H 1.09007 * 109.46976 * 60.00104 * 10 8 7 36 36 H 1.09002 * 109.47233 * 180.02562 * 10 8 7 37 37 H 1.09000 * 109.47574 * 300.00417 * 10 8 7 38 38 H 1.09007 * 109.47264 * 295.00348 * 11 8 7 39 39 H 1.08999 * 109.47171 * 54.99895 * 11 8 7 40 40 H 1.08998 * 109.47006 * 60.00395 * 13 12 11 41 41 H 1.09001 * 109.46960 * 179.97438 * 13 12 11 42 42 H 1.09001 * 109.47155 * 300.00244 * 13 12 11 43 43 H 1.09000 * 109.46943 * 179.97438 * 16 14 12 44 44 H 1.08998 * 109.47026 * 299.99023 * 16 14 12 45 45 H 1.08998 * 109.47302 * 60.00074 * 16 14 12 46 46 H 1.09003 * 109.47137 * 184.99836 * 17 14 12 47 47 H 1.08998 * 109.47408 * 305.00429 * 17 14 12 48 48 H 0.97003 * 120.00098 * 180.02562 * 21 20 18 49 49 H 1.08007 * 119.96975 * 180.26053 * 26 6 5 50 50 H 1.08007 * 120.02904 * 179.75033 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5169 0.0011 6 6 3.3019 3.6757 0.0070 7 6 3.9861 5.0184 0.0144 8 6 4.2182 5.4805 -1.4255 9 1 4.7711 4.7140 -1.9685 10 6 2.8699 5.7170 -2.1089 11 6 5.0225 6.7820 -1.4202 12 7 5.3481 7.1622 -2.8013 13 6 6.2624 6.1889 -3.4135 14 6 5.9097 8.5185 -2.8554 15 1 5.2648 9.2012 -2.3022 16 6 7.3065 8.5174 -2.2309 17 6 6.0032 8.9739 -4.3131 18 6 4.6169 9.0930 -4.8921 19 1 3.7555 8.8662 -4.2815 20 6 4.4485 9.4906 -6.2015 21 7 3.2387 9.5951 -6.7065 22 14 5.9386 9.8823 -7.2577 23 1 6.3918 8.6497 -7.9509 24 1 5.5749 10.9112 -8.2647 25 1 7.0337 10.3973 -6.3971 26 6 1.9211 3.6047 0.0008 27 6 1.2915 2.3750 0.0002 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 4.0208 0.3799 0.0005 32 1 5.1346 2.5749 0.0019 33 1 3.3579 5.7434 0.5319 34 1 4.9438 4.9354 0.5282 35 1 2.3169 6.4836 -1.5659 36 1 3.0352 6.0458 -3.1349 37 1 2.2968 4.7898 -2.1127 38 1 4.4324 7.5720 -0.9554 39 1 5.9440 6.6374 -0.8562 40 1 5.7926 5.2054 -3.4233 41 1 6.4866 6.4942 -4.4356 42 1 7.1859 6.1448 -2.8362 43 1 7.7234 9.5237 -2.2715 44 1 7.2399 8.1930 -1.1925 45 1 7.9514 7.8348 -2.7843 46 1 6.5010 9.9425 -4.3600 47 1 6.5746 8.2436 -4.8860 48 1 3.1202 9.8744 -7.6278 49 1 1.3342 4.5114 0.0012 50 1 0.2129 2.3201 -0.0006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411415486.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:22 Heat of formation + Delta-G solvation = -21.363488 kcal Electronic energy + Delta-G solvation = -25260.295018 eV Core-core repulsion = 21866.508143 eV Total energy + Delta-G solvation = -3393.786875 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.32361 -38.62778 -37.71602 -35.06416 -32.62943 -31.28086 -31.07157 -29.73495 -27.84645 -27.74521 -26.67898 -26.02552 -24.18449 -22.73506 -22.37679 -21.15274 -19.49333 -18.72336 -18.29796 -16.54867 -16.37877 -15.95756 -15.94393 -15.31711 -14.94684 -14.53551 -14.26754 -14.09207 -13.75153 -13.61496 -13.46718 -13.29371 -12.86056 -12.54399 -12.34665 -12.24789 -12.10575 -11.95300 -11.70173 -11.63057 -11.47159 -11.26386 -11.17514 -10.97911 -10.87154 -10.74036 -10.52182 -10.39861 -10.19228 -9.96797 -9.68835 -9.47959 -9.08268 -8.99005 -8.39608 -8.14567 -7.43707 -5.88372 -3.81921 1.24134 1.32825 3.08141 3.37009 3.44760 3.47082 3.64480 4.52595 4.56696 4.63011 4.73486 4.85119 4.86840 4.88471 5.09820 5.18237 5.27753 5.33672 5.35574 5.43743 5.47746 5.58295 5.66874 5.69031 5.78149 5.82938 5.88030 5.92816 5.94978 6.02466 6.09201 6.14074 6.18627 6.24294 6.26187 6.42791 6.43472 6.52885 6.58351 6.61996 6.65758 6.71248 6.83131 6.96663 7.17122 7.22775 7.37549 7.84933 7.88662 8.01074 8.75367 9.24719 9.74969 11.25683 Molecular weight = 305.21amu Principal moments of inertia in cm(-1) A = 0.019842 B = 0.002803 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.815731 B = 9988.362294 C =10735.046231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.116 3.884 4 C -0.151 4.151 5 C -0.080 4.080 6 C -0.105 4.105 7 C -0.074 4.074 8 C -0.080 4.080 9 H 0.069 0.931 10 C -0.139 4.139 11 C 0.060 3.940 12 N -0.509 5.509 13 C 0.024 3.976 14 C 0.096 3.904 15 H 0.074 0.926 16 C -0.187 4.187 17 C -0.007 4.007 18 C -0.488 4.488 19 H 0.079 0.921 20 C 0.061 3.939 21 N -0.908 5.908 22 Si 0.872 3.128 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.269 1.269 26 C -0.073 4.073 27 C -0.206 4.206 28 H 0.056 0.944 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.047 0.953 36 H 0.077 0.923 37 H 0.043 0.957 38 H 0.068 0.932 39 H 0.022 0.978 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.015 0.985 43 H 0.054 0.946 44 H 0.042 0.958 45 H 0.053 0.947 46 H 0.016 0.984 47 H 0.012 0.988 48 H 0.259 0.741 49 H 0.126 0.874 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.744 -15.878 16.480 22.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.071 3.929 4 C -0.170 4.170 5 C -0.098 4.098 6 C -0.105 4.105 7 C -0.111 4.111 8 C -0.099 4.099 9 H 0.088 0.912 10 C -0.197 4.197 11 C -0.069 4.069 12 N -0.231 5.231 13 C -0.125 4.125 14 C -0.012 4.012 15 H 0.092 0.908 16 C -0.246 4.246 17 C -0.045 4.045 18 C -0.526 4.526 19 H 0.097 0.903 20 C -0.138 4.138 21 N -0.549 5.549 22 Si 0.700 3.300 23 H -0.206 1.206 24 H -0.217 1.217 25 H -0.194 1.194 26 C -0.091 4.091 27 C -0.225 4.225 28 H 0.074 0.926 29 H 0.116 0.884 30 H 0.072 0.928 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.062 0.938 38 H 0.087 0.913 39 H 0.041 0.959 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.033 0.967 43 H 0.073 0.927 44 H 0.061 0.939 45 H 0.072 0.928 46 H 0.034 0.966 47 H 0.031 0.969 48 H 0.069 0.931 49 H 0.144 0.856 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.203 -16.011 16.037 22.693 hybrid contribution 1.204 0.316 -0.295 1.280 sum 0.001 -15.694 15.741 22.228 Atomic orbital electron populations 1.23029 0.78533 1.03752 1.01407 1.86045 1.21285 1.27190 1.88987 1.19013 0.92384 0.84049 0.97469 1.20381 0.91328 0.98581 1.06679 1.20862 0.99778 0.91023 0.98098 1.19818 0.93515 0.95329 1.01857 1.20636 0.99886 0.92927 0.97701 1.21118 0.97762 0.96939 0.94063 0.91241 1.21773 0.95186 1.00035 1.02669 1.22153 0.97412 0.96811 0.90484 1.62022 1.43579 1.01894 1.15634 1.22415 0.93661 0.95999 1.00377 1.21694 0.91333 0.89163 0.99038 0.90829 1.22559 1.00449 1.01730 0.99828 1.19695 0.98447 0.95278 0.91042 1.21056 0.91843 1.42955 0.96762 0.90271 1.25009 0.95144 0.95786 0.97906 1.69912 1.20820 1.49385 1.14766 0.86916 0.84261 0.78233 0.80612 1.20622 1.21683 1.19356 1.20898 0.94139 0.96992 0.97036 1.21221 0.99905 0.92413 1.08942 0.92584 0.88407 0.92753 0.85501 0.85514 0.91085 0.91470 0.93431 0.90413 0.93789 0.91316 0.95945 0.92346 0.90759 0.96691 0.92668 0.93859 0.92847 0.96561 0.96937 0.93130 0.85625 0.85674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.45 10.50 -19.42 -0.20 -3.65 16 3 C 0.12 1.32 6.69 -39.22 -0.26 1.06 16 4 C -0.15 -1.67 9.99 -39.43 -0.39 -2.06 16 5 C -0.08 -0.86 9.69 -39.60 -0.38 -1.24 16 6 C -0.10 -1.18 4.72 -104.60 -0.49 -1.67 16 7 C -0.07 -0.81 4.84 -27.89 -0.13 -0.94 16 8 C -0.08 -1.07 2.30 -90.62 -0.21 -1.28 16 9 H 0.07 0.97 6.34 -51.93 -0.33 0.64 16 10 C -0.14 -2.10 8.63 37.16 0.32 -1.78 16 11 C 0.06 0.89 3.92 -3.82 -0.01 0.87 16 12 N -0.51 -9.30 3.88 -234.88 -0.91 -10.21 16 13 C 0.02 0.40 8.45 60.07 0.51 0.91 16 14 C 0.10 1.87 2.26 -67.71 -0.15 1.71 16 15 H 0.07 1.49 7.93 -51.93 -0.41 1.07 16 16 C -0.19 -3.01 8.44 37.16 0.31 -2.69 16 17 C -0.01 -0.17 3.44 -27.88 -0.10 -0.27 16 18 C -0.49 -13.76 9.39 -34.44 -0.32 -14.08 16 19 H 0.08 2.44 7.99 -52.49 -0.42 2.02 16 20 C 0.06 1.78 5.47 -17.82 -0.10 1.69 16 21 N -0.91 -28.34 13.96 55.43 0.77 -27.57 16 22 Si 0.87 21.98 27.47 -169.99 -4.67 17.31 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 26 C -0.07 -0.80 7.94 -39.61 -0.31 -1.12 16 27 C -0.21 -2.20 9.04 -39.43 -0.36 -2.56 16 28 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 29 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 31 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 32 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 34 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 35 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 36 H 0.08 1.44 7.75 -51.93 -0.40 1.04 16 37 H 0.04 0.62 6.25 -51.93 -0.32 0.29 16 38 H 0.07 1.04 7.93 -51.93 -0.41 0.63 16 39 H 0.02 0.31 7.06 -51.93 -0.37 -0.05 16 40 H 0.06 0.92 6.37 -51.93 -0.33 0.58 16 41 H 0.07 1.41 6.21 -51.93 -0.32 1.08 16 42 H 0.01 0.23 6.46 -51.93 -0.34 -0.11 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.04 0.62 6.91 -51.93 -0.36 0.26 16 45 H 0.05 0.84 6.42 -51.93 -0.33 0.51 16 46 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 47 H 0.01 0.30 5.69 -51.93 -0.30 0.00 16 48 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 49 H 0.13 1.27 8.02 -52.48 -0.42 0.85 16 50 H 0.13 1.08 6.30 -52.48 -0.33 0.75 16 LS Contribution 382.74 15.07 5.77 5.77 Total: -1.00 -31.61 382.74 -9.03 -40.64 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -8.68 Total: -0.02 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: -1.10 Total: -22.26 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: -0.14 Total: -37.78 kcal Atomic # 8 Polarization: -3.45 SS G_CDS: -0.20 Total: -3.65 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.61 -9.03 -40.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411415486.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.275 kcal (2) G-P(sol) polarization free energy of solvation -31.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds