Wall clock time and date at job start Tue Mar 31 2020 08:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47044 * 2 1 4 4 C 1.53003 * 109.47208 * 120.00124 * 2 1 3 5 5 C 1.50698 * 109.47323 * 183.57395 * 4 2 1 6 6 H 1.08003 * 119.99770 * 5.07925 * 5 4 2 7 7 C 1.37871 * 120.00232 * 185.08145 * 5 4 2 8 8 N 1.31519 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00042 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46928 * 90.00281 * 9 7 5 11 11 H 1.48501 * 109.47141 * 210.00293 * 9 7 5 12 12 H 1.48495 * 109.47489 * 330.00242 * 9 7 5 13 13 N 1.46900 * 109.46957 * 239.99666 * 2 1 3 14 14 C 1.46853 * 111.00293 * 308.74636 * 13 2 1 15 15 C 1.53033 * 109.52305 * 185.83831 * 14 13 2 16 16 C 1.53114 * 109.27866 * 300.81725 * 15 14 13 17 17 C 1.53000 * 109.52185 * 177.56005 * 16 15 14 18 18 C 1.53004 * 109.47406 * 175.00352 * 17 16 15 19 19 C 1.52999 * 109.47427 * 180.02562 * 18 17 16 20 20 N 1.46491 * 109.47206 * 179.97438 * 19 18 17 21 21 C 1.36885 * 126.40111 * 89.99450 * 20 19 18 22 22 C 1.34663 * 106.82102 * 179.97438 * 21 20 19 23 23 N 1.34128 * 108.01957 * 0.02562 * 22 21 20 24 24 C 1.30504 * 109.25597 * 359.72432 * 23 22 21 25 25 C 1.53122 * 109.15928 * 57.65953 * 16 15 14 26 26 C 1.46845 * 110.99907 * 72.95598 * 13 2 1 27 27 H 1.08998 * 109.47132 * 60.00421 * 1 2 3 28 28 H 1.09004 * 109.47126 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47143 * 299.99768 * 1 2 3 30 30 H 1.09000 * 109.46560 * 303.57146 * 4 2 1 31 31 H 1.08996 * 109.47229 * 63.56548 * 4 2 1 32 32 H 0.96998 * 119.99950 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.45903 * 65.81716 * 14 13 2 34 34 H 1.09005 * 109.46159 * 305.85834 * 14 13 2 35 35 H 1.08998 * 109.50192 * 60.76224 * 15 14 13 36 36 H 1.09009 * 109.49812 * 180.87906 * 15 14 13 37 37 H 1.08997 * 109.52641 * 297.74700 * 16 15 14 38 38 H 1.08996 * 109.47488 * 295.00322 * 17 16 15 39 39 H 1.09000 * 109.47081 * 55.00257 * 17 16 15 40 40 H 1.09005 * 109.46614 * 300.00204 * 18 17 16 41 41 H 1.09000 * 109.47079 * 59.99903 * 18 17 16 42 42 H 1.09007 * 109.46478 * 299.99995 * 19 18 17 43 43 H 1.09000 * 109.47391 * 59.99701 * 19 18 17 44 44 H 1.08007 * 126.58619 * 359.97133 * 21 20 19 45 45 H 1.08005 * 125.98820 * 180.02562 * 22 21 20 46 46 H 1.07994 * 125.64835 * 180.29263 * 24 23 22 47 47 H 1.08997 * 109.50130 * 182.40094 * 25 16 15 48 48 H 1.08997 * 109.50151 * 62.28188 * 25 16 15 49 49 H 1.09003 * 109.46235 * 294.17678 * 26 13 2 50 50 H 1.08994 * 109.46274 * 54.14364 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5444 -0.6451 1.2944 6 1 4.0781 -0.0645 0.5563 7 6 4.2396 -1.3164 2.2777 8 7 3.5898 -2.0238 3.1760 9 14 6.1044 -1.2225 2.3331 10 1 6.5171 -0.0708 3.1747 11 1 6.6462 -2.4780 2.9120 12 1 6.6322 -1.0440 0.9567 13 7 2.0197 -0.6926 -1.1994 14 6 1.3861 -2.0097 -1.3421 15 6 2.0233 -2.7594 -2.5143 16 6 1.8400 -1.9426 -3.7963 17 6 2.5279 -2.6577 -4.9609 18 6 2.2394 -1.9070 -6.2625 19 6 2.9268 -2.6225 -7.4271 20 7 2.6500 -1.9040 -8.6734 21 6 3.3977 -0.8908 -9.2102 22 6 2.7892 -0.5208 -10.3530 23 7 1.6993 -1.2867 -10.5096 24 6 1.6126 -2.1213 -9.5101 25 6 2.4662 -0.5585 -3.6042 26 6 1.8162 0.1274 -2.4005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6253 -0.2457 2.1380 31 1 1.7299 -1.7657 1.2179 32 1 4.0788 -2.4965 3.8676 33 1 0.3200 -1.8814 -1.5294 34 1 1.5273 -2.5819 -0.4252 35 1 3.0868 -2.9001 -2.3212 36 1 1.5421 -3.7307 -2.6297 37 1 0.7768 -1.8349 -4.0108 38 1 3.6037 -2.6834 -4.7871 39 1 2.1478 -3.6765 -5.0371 40 1 1.1636 -1.8814 -6.4363 41 1 2.6195 -0.8883 -6.1862 42 1 4.0026 -2.6485 -7.2534 43 1 2.5464 -3.6411 -7.5033 44 1 4.3020 -0.4692 -8.7965 45 1 3.1207 0.2566 -11.0257 46 1 0.8382 -2.8616 -9.3737 47 1 2.3015 0.0426 -4.4984 48 1 3.5366 -0.6646 -3.4283 49 1 0.7481 0.2456 -2.5829 50 1 2.2697 1.1074 -2.2523 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411500083.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:36 Heat of formation + Delta-G solvation = 40.270188 kcal Electronic energy + Delta-G solvation = -25190.807649 eV Core-core repulsion = 21831.986161 eV Total energy + Delta-G solvation = -3358.821488 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.24624 -39.24297 -36.69515 -34.80016 -32.83485 -31.70394 -30.60507 -29.76593 -29.27247 -27.30893 -26.38519 -23.80005 -23.22265 -22.40461 -21.56397 -21.33940 -21.02345 -19.76882 -18.64783 -17.61474 -16.16373 -15.69716 -15.59419 -15.45755 -14.62180 -14.53493 -14.34982 -14.13978 -14.03945 -13.90788 -13.58779 -13.51078 -13.10506 -12.84021 -12.43928 -12.38335 -12.01883 -11.84429 -11.76775 -11.58928 -11.40380 -11.11561 -11.00061 -10.83827 -10.57435 -10.54239 -10.35927 -10.22269 -10.15997 -10.02137 -9.81794 -9.73947 -9.15121 -8.95545 -8.76542 -8.26081 -7.42189 -5.88875 -3.86138 1.81983 2.52310 2.95398 3.37531 3.43795 3.48431 4.25023 4.36890 4.47665 4.53641 4.57168 4.59276 4.76327 4.79808 4.97329 5.06331 5.15628 5.22834 5.34127 5.45579 5.48338 5.51207 5.56283 5.64092 5.67904 5.76968 5.81065 5.84053 5.92787 5.94210 6.01862 6.03381 6.08746 6.12772 6.21535 6.29267 6.41619 6.45593 6.49450 6.58658 6.68482 6.74578 6.92729 7.00726 7.55277 7.69919 7.83641 7.94707 8.05173 8.12873 8.58428 9.18987 9.74982 11.23189 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.019941 B = 0.002606 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.806716 B =10741.149849 C =11369.627458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.087 3.913 3 H 0.066 0.934 4 C 0.030 3.970 5 C -0.485 4.485 6 H 0.058 0.942 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.888 3.112 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.508 5.508 14 C 0.057 3.943 15 C -0.110 4.110 16 C -0.085 4.085 17 C -0.110 4.110 18 C -0.134 4.134 19 C 0.102 3.898 20 N -0.456 5.456 21 C -0.055 4.055 22 C -0.035 4.035 23 N -0.499 5.499 24 C 0.178 3.822 25 C -0.109 4.109 26 C 0.054 3.946 27 H 0.038 0.962 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.014 0.986 31 H 0.022 0.978 32 H 0.257 0.743 33 H 0.021 0.979 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.173 0.827 45 H 0.168 0.832 46 H 0.202 0.798 47 H 0.056 0.944 48 H 0.071 0.929 49 H 0.021 0.979 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.480 -1.289 -20.871 21.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.021 4.021 3 H 0.085 0.915 4 C -0.007 4.007 5 C -0.524 4.524 6 H 0.077 0.923 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.717 3.283 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.232 5.232 14 C -0.070 4.070 15 C -0.148 4.148 16 C -0.103 4.103 17 C -0.148 4.148 18 C -0.173 4.173 19 C -0.020 4.020 20 N -0.139 5.139 21 C -0.188 4.188 22 C -0.183 4.183 23 N -0.217 5.217 24 C -0.104 4.104 25 C -0.147 4.147 26 C -0.075 4.075 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.032 0.968 31 H 0.040 0.960 32 H 0.066 0.934 33 H 0.040 0.960 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.190 0.810 45 H 0.185 0.815 46 H 0.219 0.781 47 H 0.075 0.925 48 H 0.089 0.911 49 H 0.039 0.961 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.453 -1.500 -21.193 21.525 hybrid contribution 0.724 0.104 0.786 1.074 sum -2.729 -1.396 -20.407 20.636 Atomic orbital electron populations 1.22520 0.99858 1.01306 1.00515 1.21904 0.89973 0.98155 0.92106 0.91529 1.19188 0.96343 0.95504 0.89656 1.21127 0.91565 1.28744 1.10966 0.92344 1.24994 0.97952 0.95923 0.96061 1.69963 1.35106 1.32990 1.16508 0.86648 0.86538 0.77085 0.78012 1.21059 1.21597 1.19964 1.62025 1.57721 1.02179 1.01232 1.22049 0.94507 0.91499 0.98990 1.21628 1.02356 0.97273 0.93520 1.21174 0.99135 0.95578 0.94436 1.21565 1.01466 0.98881 0.92923 1.22032 1.01135 1.00556 0.93542 1.22044 1.02517 0.96071 0.81400 1.45670 1.21112 1.27833 1.19253 1.22781 1.01321 0.96064 0.98646 1.22306 0.94765 1.03036 0.98145 1.70285 1.20001 1.07588 1.23871 1.24986 0.94094 1.02610 0.88700 1.21655 1.01087 0.95174 0.96780 1.22052 0.97335 0.96987 0.91121 0.94329 0.92808 0.92646 0.96792 0.95969 0.93370 0.96047 0.89645 0.90848 0.92382 0.91956 0.91350 0.91751 0.91311 0.90771 0.88921 0.88840 0.81002 0.81512 0.78142 0.92535 0.91064 0.96114 0.91497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.13 8.40 37.16 0.31 -2.82 16 2 C 0.09 1.74 2.26 -67.71 -0.15 1.59 16 3 H 0.07 1.37 7.93 -51.93 -0.41 0.95 16 4 C 0.03 0.76 4.40 -27.88 -0.12 0.63 16 5 C -0.49 -13.44 8.80 -34.44 -0.30 -13.74 16 6 H 0.06 1.62 7.75 -52.48 -0.41 1.21 16 7 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 8 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 9 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 13 N -0.51 -9.35 4.26 -226.69 -0.97 -10.31 16 14 C 0.06 0.97 4.47 -3.83 -0.02 0.95 16 15 C -0.11 -1.51 5.38 -26.66 -0.14 -1.65 16 16 C -0.08 -0.94 2.25 -90.50 -0.20 -1.15 16 17 C -0.11 -0.91 4.69 -26.73 -0.13 -1.03 16 18 C -0.13 -0.96 5.30 -26.73 -0.14 -1.10 16 19 C 0.10 0.61 6.15 -4.05 -0.02 0.59 16 20 N -0.46 -3.75 2.75 -118.58 -0.33 -4.08 16 21 C -0.05 -0.47 11.58 -16.56 -0.19 -0.66 16 22 C -0.03 -0.35 11.87 -17.81 -0.21 -0.56 16 23 N -0.50 -5.90 11.25 -14.67 -0.17 -6.06 16 24 C 0.18 1.65 12.56 -90.37 -1.14 0.52 16 25 C -0.11 -1.36 5.08 -26.65 -0.14 -1.49 16 26 C 0.05 0.81 5.18 -3.83 -0.02 0.79 16 27 H 0.04 0.59 6.93 -51.93 -0.36 0.23 16 28 H 0.05 0.91 6.45 -51.93 -0.33 0.58 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.02 0.59 6.39 -51.93 -0.33 0.26 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.02 0.34 6.57 -51.93 -0.34 0.00 16 34 H 0.09 1.69 6.28 -51.93 -0.33 1.37 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.61 6.64 -51.93 -0.34 0.27 16 42 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.17 1.05 8.06 -52.48 -0.42 0.63 16 45 H 0.17 1.31 8.06 -52.48 -0.42 0.89 16 46 H 0.20 1.21 8.06 -52.49 -0.42 0.79 16 47 H 0.06 0.61 6.71 -51.93 -0.35 0.26 16 48 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 49 H 0.02 0.30 6.98 -51.93 -0.36 -0.06 16 50 H 0.07 1.02 7.98 -51.93 -0.41 0.61 16 LS Contribution 384.87 15.07 5.80 5.80 Total: -1.00 -32.12 384.87 -11.69 -43.81 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -9.04 Total: -1.86 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: -2.71 Total: -17.82 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: -0.72 Total: -46.75 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.12 -11.69 -43.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411500083.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.078 kcal (2) G-P(sol) polarization free energy of solvation -32.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds