Wall clock time and date at job start Tue Mar 31 2020 08:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09008 * 109.46691 * 2 1 4 4 C 1.52994 * 109.47187 * 240.00259 * 2 1 3 5 5 C 1.50694 * 109.47474 * 175.99492 * 4 2 1 6 6 H 1.08002 * 119.99787 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00573 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99522 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00260 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47292 * 89.99746 * 9 7 5 11 11 H 1.48500 * 109.46930 * 209.99991 * 9 7 5 12 12 H 1.48501 * 109.46691 * 329.99568 * 9 7 5 13 13 N 1.46896 * 109.47113 * 119.99658 * 2 1 3 14 14 C 1.46840 * 111.00256 * 289.38999 * 13 2 1 15 15 C 1.53044 * 109.52227 * 185.83782 * 14 13 2 16 16 C 1.53116 * 109.27707 * 300.82264 * 15 14 13 17 17 C 1.53006 * 109.51898 * 177.55819 * 16 15 14 18 18 C 1.52998 * 109.46869 * 174.99744 * 17 16 15 19 19 C 1.53006 * 109.46869 * 179.97438 * 18 17 16 20 20 N 1.46503 * 109.46787 * 180.02562 * 19 18 17 21 21 C 1.36876 * 126.39605 * 90.00359 * 20 19 18 22 22 C 1.34667 * 106.82079 * 179.97438 * 21 20 19 23 23 N 1.34128 * 108.01440 * 0.02562 * 22 21 20 24 24 C 1.30501 * 109.25942 * 359.72268 * 23 22 21 25 25 C 1.53116 * 109.16199 * 57.65929 * 16 15 14 26 26 C 1.46852 * 110.99903 * 53.60309 * 13 2 1 27 27 H 1.08998 * 109.46623 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47039 * 299.99956 * 1 2 3 29 29 H 1.08997 * 109.47116 * 59.99900 * 1 2 3 30 30 H 1.09001 * 109.47331 * 295.99596 * 4 2 1 31 31 H 1.09005 * 109.47502 * 55.98998 * 4 2 1 32 32 H 0.97005 * 119.99812 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.46208 * 65.82203 * 14 13 2 34 34 H 1.08998 * 109.45470 * 305.84920 * 14 13 2 35 35 H 1.09002 * 109.50028 * 180.87963 * 15 14 13 36 36 H 1.08999 * 109.50221 * 60.76932 * 15 14 13 37 37 H 1.08997 * 109.52160 * 297.67948 * 16 15 14 38 38 H 1.09001 * 109.46992 * 295.00274 * 17 16 15 39 39 H 1.09003 * 109.46913 * 54.99863 * 17 16 15 40 40 H 1.08999 * 109.47273 * 299.99879 * 18 17 16 41 41 H 1.08997 * 109.46846 * 60.00401 * 18 17 16 42 42 H 1.08999 * 109.47074 * 300.00000 * 19 18 17 43 43 H 1.08997 * 109.47059 * 60.00531 * 19 18 17 44 44 H 1.08007 * 126.59312 * 359.96401 * 21 20 19 45 45 H 1.07998 * 125.99717 * 179.97438 * 22 21 20 46 46 H 1.08000 * 125.64722 * 180.29110 * 24 23 22 47 47 H 1.08995 * 109.50983 * 62.27927 * 25 16 15 48 48 H 1.08997 * 109.50074 * 182.40479 * 25 16 15 49 49 H 1.08997 * 109.46092 * 294.17730 * 26 13 2 50 50 H 1.09003 * 109.45912 * 54.14154 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5437 -0.6358 -1.2999 6 1 4.0819 -0.1193 -0.5189 7 6 4.2326 -1.2181 -2.3427 8 7 3.5774 -1.8485 -3.2929 9 14 6.0966 -1.1129 -2.4051 10 1 6.6822 -2.2781 -1.6948 11 1 6.5456 -1.1192 -3.8205 12 1 6.5437 0.1423 -1.7495 13 7 2.0197 -0.6924 1.1994 14 6 1.7660 0.1036 2.4070 15 6 2.4157 -0.5771 3.6141 16 6 1.8328 -1.9837 3.7755 17 6 2.5221 -2.6918 4.9437 18 6 1.8548 -4.0475 5.1835 19 6 2.5445 -4.7558 6.3513 20 7 1.9060 -6.0543 6.5806 21 6 2.2579 -7.2453 6.0051 22 6 1.4161 -8.1770 6.4919 23 7 0.5729 -7.5712 7.3410 24 6 0.8639 -6.3006 7.4034 25 6 2.0678 -2.7761 2.4865 26 6 1.4281 -2.0318 1.3123 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.7365 -1.7675 -1.2141 31 1 1.6192 -0.2505 -2.1378 32 1 4.0621 -2.2585 -4.0264 33 1 0.6913 0.1836 2.5701 34 1 2.1894 1.1000 2.2806 35 1 2.2139 0.0058 4.5127 36 1 3.4923 -0.6449 3.4577 37 1 0.7629 -1.9143 3.9718 38 1 3.5755 -2.8419 4.7070 39 1 2.4351 -2.0800 5.8416 40 1 0.8015 -3.8973 5.4202 41 1 1.9419 -4.6592 4.2856 42 1 3.5977 -4.9061 6.1142 43 1 2.4579 -4.1443 7.2494 44 1 3.0569 -7.4069 5.2966 45 1 1.4189 -9.2277 6.2417 46 1 0.3543 -5.5672 8.0107 47 1 3.1388 -2.8786 2.3124 48 1 1.6174 -3.7643 2.5797 49 1 0.3550 -1.9418 1.4804 50 1 1.6059 -2.5861 0.3907 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411500086.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:39 Heat of formation + Delta-G solvation = 40.308636 kcal Electronic energy + Delta-G solvation = -25262.331185 eV Core-core repulsion = 21903.511364 eV Total energy + Delta-G solvation = -3358.819820 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.20621 -39.24992 -36.68011 -34.79039 -32.84296 -31.72291 -30.47853 -29.75832 -29.33138 -27.31027 -26.37218 -23.72334 -23.00814 -22.81737 -21.52324 -21.19643 -20.94189 -19.79521 -18.66676 -17.58569 -16.16745 -15.71092 -15.59863 -15.38043 -14.58299 -14.55230 -14.35684 -14.13831 -13.90553 -13.87097 -13.66689 -13.44982 -13.18588 -12.82760 -12.41578 -12.30842 -12.15962 -11.79589 -11.74510 -11.57081 -11.40608 -11.12878 -10.99038 -10.81636 -10.59524 -10.55481 -10.36116 -10.21087 -10.15043 -9.98368 -9.80563 -9.70110 -9.15168 -8.96454 -8.72168 -8.26218 -7.43750 -5.89275 -3.86785 1.86185 2.55995 2.99623 3.37681 3.43759 3.47655 4.27668 4.38291 4.50926 4.53398 4.56923 4.62507 4.78280 4.81884 4.96643 5.07251 5.19882 5.27788 5.32416 5.47781 5.50053 5.51385 5.54804 5.64888 5.72344 5.78249 5.79977 5.82728 5.90205 5.94264 6.01580 6.06308 6.08934 6.17129 6.18660 6.28522 6.41438 6.45614 6.53809 6.58840 6.68101 6.75320 6.96722 6.99701 7.55530 7.69957 7.87629 7.94220 8.04407 8.12742 8.58497 9.19205 9.74662 11.22815 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.014784 B = 0.002870 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.449245 B = 9754.088335 C =10580.664132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.087 3.913 3 H 0.068 0.932 4 C 0.030 3.970 5 C -0.487 4.487 6 H 0.060 0.940 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.889 3.111 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.509 5.509 14 C 0.053 3.947 15 C -0.108 4.108 16 C -0.085 4.085 17 C -0.109 4.109 18 C -0.136 4.136 19 C 0.103 3.897 20 N -0.457 5.457 21 C -0.054 4.054 22 C -0.034 4.034 23 N -0.499 5.499 24 C 0.178 3.822 25 C -0.110 4.110 26 C 0.057 3.943 27 H 0.052 0.948 28 H 0.038 0.962 29 H 0.055 0.945 30 H 0.018 0.982 31 H 0.017 0.983 32 H 0.257 0.743 33 H 0.022 0.978 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.173 0.827 45 H 0.168 0.832 46 H 0.202 0.798 47 H 0.072 0.928 48 H 0.057 0.943 49 H 0.021 0.979 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.771 -3.537 20.092 20.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.021 4.021 3 H 0.086 0.914 4 C -0.007 4.007 5 C -0.526 4.526 6 H 0.078 0.922 7 C -0.150 4.150 8 N -0.546 5.546 9 Si 0.718 3.282 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.233 5.233 14 C -0.075 4.075 15 C -0.146 4.146 16 C -0.104 4.104 17 C -0.148 4.148 18 C -0.174 4.174 19 C -0.020 4.020 20 N -0.139 5.139 21 C -0.187 4.187 22 C -0.182 4.182 23 N -0.217 5.217 24 C -0.105 4.105 25 C -0.148 4.148 26 C -0.071 4.071 27 H 0.071 0.929 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.037 0.963 31 H 0.036 0.964 32 H 0.067 0.933 33 H 0.040 0.960 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.111 0.889 43 H 0.111 0.889 44 H 0.191 0.809 45 H 0.185 0.815 46 H 0.218 0.782 47 H 0.091 0.909 48 H 0.076 0.924 49 H 0.039 0.961 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.783 -3.932 20.296 21.016 hybrid contribution 0.784 0.510 -0.586 1.104 sum -2.999 -3.421 19.710 20.228 Atomic orbital electron populations 1.22520 0.99889 1.01269 1.00555 1.21907 0.89959 0.98268 0.92001 0.91402 1.19195 0.96387 0.95295 0.89832 1.21160 0.91637 1.33205 1.06604 0.92176 1.25010 0.97964 0.95998 0.95990 1.69965 1.35128 1.37306 1.12153 0.86636 0.86520 0.78278 0.76756 1.20970 1.21643 1.20050 1.62031 1.58371 1.01748 1.01121 1.22052 0.97202 0.97243 0.91024 1.21605 1.01292 0.94836 0.96898 1.21179 0.99239 0.95371 0.94579 1.21557 1.00168 0.94425 0.98603 1.22035 1.00298 0.97224 0.97814 1.22033 0.97978 0.81467 1.00490 1.45659 1.26369 1.08488 1.33386 1.22798 1.05391 0.85281 1.05226 1.22309 0.95955 0.99937 1.00029 1.70279 1.26197 1.04884 1.20380 1.24968 0.91739 0.95155 0.98623 1.21675 1.02198 0.97383 0.93549 1.22059 0.94797 0.91144 0.99129 0.92895 0.94280 0.92615 0.96350 0.96437 0.93346 0.96023 0.91438 0.92490 0.91032 0.91948 0.91360 0.91926 0.91301 0.90580 0.88936 0.88928 0.80942 0.81485 0.78181 0.90922 0.92426 0.96086 0.89579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.14 8.44 37.16 0.31 -2.83 16 2 C 0.09 1.74 2.26 -67.72 -0.15 1.58 16 3 H 0.07 1.39 7.98 -51.92 -0.41 0.98 16 4 C 0.03 0.75 4.37 -27.89 -0.12 0.63 16 5 C -0.49 -13.50 8.81 -34.44 -0.30 -13.80 16 6 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 7 C 0.05 1.41 5.46 -17.82 -0.10 1.32 16 8 N -0.90 -27.12 13.29 55.43 0.74 -26.39 16 9 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.51 -9.32 4.29 -226.69 -0.97 -10.29 16 14 C 0.05 0.79 5.14 -3.83 -0.02 0.77 16 15 C -0.11 -1.32 5.38 -26.65 -0.14 -1.47 16 16 C -0.09 -0.94 2.25 -90.50 -0.20 -1.15 16 17 C -0.11 -0.89 4.69 -26.73 -0.13 -1.02 16 18 C -0.14 -1.03 5.30 -26.73 -0.14 -1.17 16 19 C 0.10 0.65 6.15 -4.04 -0.02 0.62 16 20 N -0.46 -3.97 2.75 -118.57 -0.33 -4.29 16 21 C -0.05 -0.50 11.58 -16.56 -0.19 -0.69 16 22 C -0.03 -0.37 11.87 -17.81 -0.21 -0.58 16 23 N -0.50 -6.13 11.25 -14.67 -0.17 -6.29 16 24 C 0.18 1.71 12.56 -90.38 -1.14 0.57 16 25 C -0.11 -1.52 5.08 -26.65 -0.14 -1.65 16 26 C 0.06 0.96 4.53 -3.83 -0.02 0.95 16 27 H 0.05 0.91 6.45 -51.93 -0.34 0.57 16 28 H 0.04 0.59 6.84 -51.93 -0.35 0.24 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.02 0.49 6.28 -51.93 -0.33 0.16 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.02 0.31 6.89 -51.93 -0.36 -0.05 16 34 H 0.07 1.01 8.01 -51.93 -0.42 0.59 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.69 6.64 -51.93 -0.34 0.35 16 42 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.17 1.20 8.06 -52.48 -0.42 0.78 16 45 H 0.17 1.43 8.06 -52.49 -0.42 1.01 16 46 H 0.20 1.26 8.06 -52.49 -0.42 0.84 16 47 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 48 H 0.06 0.72 6.71 -51.93 -0.35 0.37 16 49 H 0.02 0.34 6.57 -51.93 -0.34 0.00 16 50 H 0.09 1.73 6.17 -51.93 -0.32 1.41 16 LS Contribution 384.62 15.07 5.80 5.80 Total: -1.00 -32.19 384.62 -11.68 -43.87 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -9.02 Total: -1.36 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -2.71 Total: -17.91 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: -0.73 Total: -47.26 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.19 -11.68 -43.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411500086.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.183 kcal (2) G-P(sol) polarization free energy of solvation -32.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds