Wall clock time and date at job start Tue Mar 31 2020 08:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50692 * 120.00449 * 2 1 4 4 C 1.50708 * 119.99341 * 179.97438 * 2 1 3 5 5 N 1.46904 * 109.46812 * 96.94784 * 4 2 1 6 6 C 1.46900 * 110.99923 * 164.17525 * 5 4 2 7 7 C 1.50699 * 109.47258 * 293.95618 * 6 5 4 8 8 C 1.39868 * 126.03603 * 269.69403 * 7 6 5 9 9 N 1.30839 * 108.20524 * 180.26377 * 8 7 6 10 10 N 1.40085 * 108.20155 * 359.97438 * 9 8 7 11 11 C 1.46498 * 126.03501 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47242 * 95.02649 * 11 10 9 13 13 C 1.53002 * 109.47219 * 215.02430 * 11 10 9 14 14 C 1.34947 * 107.92620 * 0.02562 * 10 9 8 15 15 C 1.46894 * 110.99678 * 288.12842 * 5 4 2 16 16 H 1.08998 * 109.47457 * 47.37143 * 15 5 4 17 17 C 1.52998 * 109.47317 * 287.36529 * 15 5 4 18 18 C 1.53002 * 109.47070 * 167.36839 * 15 5 4 19 19 C 1.50706 * 109.46935 * 295.52837 * 18 15 5 20 20 H 1.07997 * 119.99966 * 354.88263 * 19 18 15 21 21 C 1.37881 * 119.99950 * 174.88706 * 19 18 15 22 22 N 1.31512 * 119.99758 * 5.74317 * 21 19 18 23 23 Si 1.86795 * 119.99929 * 185.74543 * 21 19 18 24 24 H 1.48497 * 109.47163 * 59.99925 * 23 21 19 25 25 H 1.48503 * 109.47086 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47256 * 299.99606 * 23 21 19 27 27 H 1.08007 * 120.00029 * 5.02331 * 1 2 3 28 28 H 1.08001 * 120.00486 * 185.02603 * 1 2 3 29 29 H 1.09005 * 109.47376 * 269.99967 * 3 2 1 30 30 H 1.09000 * 109.46926 * 29.99712 * 3 2 1 31 31 H 1.09004 * 109.47396 * 149.99747 * 3 2 1 32 32 H 1.08996 * 109.47259 * 336.94605 * 4 2 1 33 33 H 1.08997 * 109.46697 * 216.94311 * 4 2 1 34 34 H 1.08992 * 109.47246 * 173.94914 * 6 5 4 35 35 H 1.09001 * 109.47142 * 53.95124 * 6 5 4 36 36 H 1.08006 * 125.89836 * 0.25388 * 8 7 6 37 37 H 1.09006 * 109.47242 * 335.02276 * 11 10 9 38 38 H 1.08994 * 109.46985 * 59.99894 * 12 11 10 39 39 H 1.09003 * 109.46781 * 179.97438 * 12 11 10 40 40 H 1.09002 * 109.47123 * 299.99374 * 12 11 10 41 41 H 1.08994 * 109.47398 * 179.97438 * 13 11 10 42 42 H 1.09004 * 109.47299 * 300.00383 * 13 11 10 43 43 H 1.09010 * 109.46994 * 59.99665 * 13 11 10 44 44 H 1.07998 * 126.12643 * 180.02562 * 14 10 9 45 45 H 1.09002 * 109.47327 * 180.02562 * 17 15 5 46 46 H 1.08998 * 109.47174 * 300.00152 * 17 15 5 47 47 H 1.08999 * 109.46984 * 60.00741 * 17 15 5 48 48 H 1.09000 * 109.47247 * 55.52512 * 18 15 5 49 49 H 1.08998 * 109.47604 * 175.52756 * 18 15 5 50 50 H 0.97005 * 119.99858 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0633 -1.3053 0.0006 5 7 2.4532 -1.6462 -1.3741 6 6 3.4903 -2.6865 -1.3846 7 6 4.7567 -2.1396 -0.7779 8 6 5.7898 -1.4982 -1.4689 9 7 6.7181 -1.1726 -0.6062 10 7 6.3040 -1.5967 0.6630 11 6 7.0494 -1.4298 1.9131 12 6 6.5734 -0.1622 2.6254 13 6 6.8100 -2.6421 2.8154 14 6 5.0978 -2.1871 0.5306 15 6 1.2862 -2.0581 -2.1654 16 1 0.4761 -1.3441 -2.0170 17 6 0.8300 -3.4477 -1.7160 18 6 1.6639 -2.1000 -3.6475 19 6 2.0079 -0.7101 -4.1176 20 1 1.8826 0.1314 -3.4524 21 6 2.4825 -0.5129 -5.3971 22 7 2.5286 -1.5183 -6.2435 23 14 3.0601 1.1823 -5.9280 24 1 4.1819 1.6180 -5.0580 25 1 3.5191 1.1294 -7.3393 26 1 1.9378 2.1474 -5.8090 27 1 -0.5400 0.9318 -0.0819 28 1 -0.5401 -0.9317 0.0819 29 1 2.2452 1.6197 -1.0277 30 1 1.4744 2.0647 0.5138 31 1 3.0160 1.1746 0.5139 32 1 1.4261 -2.0924 0.4033 33 1 2.9563 -1.2090 0.6182 34 1 3.6836 -2.9965 -2.4115 35 1 3.1503 -3.5442 -0.8041 36 1 5.8168 -1.3051 -2.5312 37 1 8.1136 -1.3452 1.6931 38 1 5.5093 -0.2468 2.8454 39 1 7.1278 -0.0383 3.5557 40 1 6.7441 0.7015 1.9827 41 1 7.3649 -2.5182 3.7453 42 1 5.7457 -2.7268 3.0354 43 1 7.1490 -3.5454 2.3079 44 1 4.5097 -2.6195 1.3266 45 1 -0.0357 -3.7536 -2.3034 46 1 1.6401 -4.1617 -1.8645 47 1 0.5608 -3.4178 -0.6602 48 1 2.5254 -2.7536 -3.7846 49 1 0.8227 -2.4815 -4.2262 50 1 2.8621 -1.3795 -7.1438 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411722502.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:44 Heat of formation + Delta-G solvation = 93.102457 kcal Electronic energy + Delta-G solvation = -26613.378999 eV Core-core repulsion = 23256.848490 eV Total energy + Delta-G solvation = -3356.530508 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.02829 -38.26768 -35.80738 -34.66422 -32.77938 -31.33254 -29.99083 -29.26520 -27.60744 -27.26213 -26.87209 -26.10155 -24.03520 -22.74118 -22.23806 -20.24119 -19.81217 -18.78115 -17.84964 -16.70767 -16.08091 -15.34603 -15.06026 -14.94743 -14.48850 -14.44290 -14.11572 -14.07320 -13.70373 -13.13913 -13.00704 -12.84893 -12.66255 -12.51493 -12.46082 -12.24333 -12.16347 -11.77061 -11.63105 -11.57359 -11.42166 -11.30662 -11.14913 -10.95666 -10.62937 -10.56182 -10.53012 -10.35731 -10.16684 -9.89101 -9.12523 -9.06301 -8.88963 -8.62182 -8.16972 -8.02135 -7.31074 -5.80678 -3.76164 2.16212 2.62232 2.66879 3.22407 3.46639 3.50509 3.55169 4.34454 4.64136 4.64796 4.81238 4.91356 4.94050 5.17763 5.22434 5.27498 5.31534 5.35502 5.39192 5.55498 5.57162 5.61645 5.76318 5.82178 5.82325 5.86852 5.90003 6.00799 6.01230 6.06533 6.09674 6.12472 6.24888 6.31440 6.36727 6.43780 6.56976 6.63624 6.80745 7.00750 7.05227 7.11492 7.28562 7.30755 7.65687 7.75666 8.00957 8.07494 8.14342 8.21699 8.68280 9.28398 9.84312 11.31412 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.011939 B = 0.004987 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.680947 B = 5613.325841 C = 6287.079207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.093 4.093 3 C -0.109 4.109 4 C 0.082 3.918 5 N -0.496 5.496 6 C 0.131 3.869 7 C -0.207 4.207 8 C 0.075 3.925 9 N -0.307 5.307 10 N -0.375 5.375 11 C 0.158 3.842 12 C -0.164 4.164 13 C -0.163 4.163 14 C 0.046 3.954 15 C 0.083 3.917 16 H 0.075 0.925 17 C -0.185 4.185 18 C 0.032 3.968 19 C -0.481 4.481 20 H 0.058 0.942 21 C 0.053 3.947 22 N -0.904 5.904 23 Si 0.883 3.117 24 H -0.277 1.277 25 H -0.292 1.292 26 H -0.281 1.281 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.029 0.971 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.027 0.973 36 H 0.185 0.815 37 H 0.098 0.902 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.161 0.839 45 H 0.054 0.946 46 H 0.053 0.947 47 H 0.038 0.962 48 H 0.020 0.980 49 H 0.014 0.986 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.533 -2.048 19.552 20.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.093 4.093 3 C -0.166 4.166 4 C -0.046 4.046 5 N -0.219 5.219 6 C 0.003 3.997 7 C -0.219 4.219 8 C -0.111 4.111 9 N -0.128 5.128 10 N -0.158 5.158 11 C 0.056 3.944 12 C -0.222 4.222 13 C -0.222 4.222 14 C -0.100 4.100 15 C -0.025 4.025 16 H 0.093 0.907 17 C -0.244 4.244 18 C -0.005 4.005 19 C -0.520 4.520 20 H 0.076 0.924 21 C -0.146 4.146 22 N -0.545 5.545 23 Si 0.712 3.288 24 H -0.203 1.203 25 H -0.218 1.218 26 H -0.207 1.207 27 H 0.111 0.889 28 H 0.109 0.891 29 H 0.093 0.907 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.047 0.953 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.045 0.955 36 H 0.202 0.798 37 H 0.116 0.884 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.178 0.822 45 H 0.074 0.926 46 H 0.072 0.928 47 H 0.057 0.943 48 H 0.038 0.962 49 H 0.032 0.968 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.022 -1.098 19.448 20.389 hybrid contribution -0.872 -0.124 -0.167 0.896 sum 5.151 -1.222 19.281 19.995 Atomic orbital electron populations 1.23520 0.95321 1.01219 1.04475 1.21594 0.94856 0.95779 0.97103 1.20731 0.99078 0.94141 1.02655 1.21188 0.98019 0.93188 0.92207 1.62052 1.10164 1.40727 1.08950 1.20368 0.87354 0.91045 1.00930 1.20078 0.99643 1.10022 0.92125 1.23894 0.91128 0.96134 0.99934 1.77335 1.24043 1.23337 0.88035 1.48651 1.14959 1.45825 1.06406 1.21114 0.96785 0.96021 0.80499 1.22234 1.02162 0.97279 1.00559 1.22184 1.03112 0.97291 0.99575 1.22085 0.88941 1.00861 0.98117 1.21983 0.91382 0.92264 0.96853 0.90711 1.22532 1.01549 1.00638 0.99651 1.19170 0.96466 0.97627 0.87203 1.21066 1.40938 0.93268 0.96698 0.92422 1.24939 0.96722 0.96108 0.96851 1.69960 1.48194 1.30781 1.05610 0.86794 0.79274 0.85515 0.77186 1.20314 1.21800 1.20697 0.88927 0.89137 0.90677 0.93019 0.92700 0.95308 0.91157 0.88764 0.95536 0.79847 0.88417 0.91950 0.90904 0.91579 0.90321 0.91629 0.91554 0.82196 0.92648 0.92843 0.94346 0.96157 0.96776 0.93410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.10 12.46 29.02 0.36 -2.73 16 2 C -0.09 -1.47 5.12 -101.07 -0.52 -1.99 16 3 C -0.11 -1.67 10.03 36.00 0.36 -1.31 16 4 C 0.08 1.28 4.93 -4.97 -0.02 1.26 16 5 N -0.50 -9.16 4.07 -229.52 -0.94 -10.09 16 6 C 0.13 2.26 4.31 -4.98 -0.02 2.24 16 7 C -0.21 -3.37 5.04 -105.06 -0.53 -3.90 16 8 C 0.08 1.33 11.96 -17.36 -0.21 1.12 16 9 N -0.31 -5.20 12.58 30.63 0.39 -4.81 16 10 N -0.37 -5.12 3.53 -54.86 -0.19 -5.31 16 11 C 0.16 1.53 3.93 -67.93 -0.27 1.27 16 12 C -0.16 -1.42 9.52 37.16 0.35 -1.07 16 13 C -0.16 -1.16 8.83 37.16 0.33 -0.83 16 14 C 0.05 0.62 8.84 -17.23 -0.15 0.47 16 15 C 0.08 1.66 2.14 -67.72 -0.15 1.51 16 16 H 0.07 1.57 6.13 -51.93 -0.32 1.25 16 17 C -0.18 -3.12 8.43 37.16 0.31 -2.81 16 18 C 0.03 0.81 4.42 -27.88 -0.12 0.68 16 19 C -0.48 -13.31 8.82 -34.44 -0.30 -13.62 16 20 H 0.06 1.62 7.75 -52.49 -0.41 1.21 16 21 C 0.05 1.51 5.45 -17.82 -0.10 1.41 16 22 N -0.90 -27.10 13.30 55.43 0.74 -26.36 16 23 Si 0.88 22.26 29.54 -169.99 -5.02 17.24 16 24 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 26 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 27 H 0.09 1.29 8.05 -52.48 -0.42 0.87 16 28 H 0.09 1.30 7.95 -52.49 -0.42 0.88 16 29 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.05 0.68 8.06 -51.93 -0.42 0.26 16 31 H 0.05 0.81 8.10 -51.93 -0.42 0.39 16 32 H 0.03 0.43 6.20 -51.93 -0.32 0.11 16 33 H 0.07 1.05 5.49 -51.93 -0.29 0.76 16 34 H 0.09 1.86 6.15 -51.93 -0.32 1.54 16 35 H 0.03 0.42 6.83 -51.93 -0.35 0.06 16 36 H 0.18 3.31 8.06 -52.48 -0.42 2.89 16 37 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.45 7.16 -51.93 -0.37 0.07 16 43 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 44 H 0.16 1.74 7.14 -52.49 -0.37 1.36 16 45 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.05 0.88 6.54 -51.93 -0.34 0.54 16 47 H 0.04 0.57 6.61 -51.93 -0.34 0.23 16 48 H 0.02 0.53 6.30 -51.93 -0.33 0.21 16 49 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 392.68 15.07 5.92 5.92 Total: -1.00 -31.18 392.68 -8.59 -39.77 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -8.80 Total: 1.93 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -0.67 Total: -18.28 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: -0.01 Total: -46.58 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.18 -8.59 -39.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411722502.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.869 kcal (2) G-P(sol) polarization free energy of solvation -31.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds