Wall clock time and date at job start Tue Mar 31 2020 09:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00098 * 2 1 4 4 H 1.48494 * 109.47413 * 269.99873 * 3 2 1 5 5 H 1.48501 * 109.47229 * 29.99880 * 3 2 1 6 6 H 1.48502 * 109.47204 * 149.99603 * 3 2 1 7 7 C 1.37878 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00045 * 0.02562 * 7 2 1 9 9 C 1.50694 * 119.99982 * 180.02562 * 7 2 1 10 10 S 1.81401 * 109.47401 * 180.02562 * 9 7 2 11 11 C 1.81398 * 103.00219 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46893 * 180.02562 * 11 10 9 13 13 O 1.42904 * 109.46998 * 180.02562 * 12 11 10 14 14 C 1.35945 * 117.00344 * 179.97438 * 13 12 11 15 15 C 1.38698 * 120.04311 * 0.27408 * 14 13 12 16 16 C 1.38149 * 119.97097 * 180.23552 * 15 14 13 17 17 C 1.38385 * 120.06093 * 359.48600 * 16 15 14 18 18 Cl 1.73597 * 119.95375 * 180.27892 * 17 16 15 19 19 C 1.38341 * 120.09069 * 0.25867 * 17 16 15 20 20 C 1.38256 * 120.03355 * 359.97438 * 19 17 16 21 21 Cl 1.73603 * 120.03249 * 180.02562 * 20 19 17 22 22 H 0.97005 * 119.99542 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47471 * 59.99955 * 9 7 2 24 24 H 1.09002 * 109.47290 * 300.00157 * 9 7 2 25 25 H 1.09005 * 109.47128 * 60.00087 * 11 10 9 26 26 H 1.09000 * 109.47452 * 299.99976 * 11 10 9 27 27 H 1.08991 * 109.47605 * 60.00459 * 12 11 10 28 28 H 1.09008 * 109.47270 * 299.99607 * 12 11 10 29 29 H 1.08002 * 120.02026 * 359.97438 * 15 14 13 30 30 H 1.08002 * 119.97347 * 179.77134 * 16 15 14 31 31 H 1.07999 * 119.98285 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0011 10 16 4.1161 -2.9044 0.0010 11 6 5.9185 -2.7000 0.0009 12 6 6.5878 -4.0759 0.0002 13 8 8.0077 -3.9149 0.0007 14 6 8.7575 -5.0489 0.0007 15 6 8.1389 -6.2903 -0.0056 16 6 8.9023 -7.4418 -0.0007 17 6 10.2836 -7.3577 -0.0003 18 17 11.2401 -8.8064 -0.0014 19 6 10.9032 -6.1209 0.0007 20 6 10.1430 -4.9661 0.0006 21 17 10.9206 -3.4139 0.0012 22 1 -0.4850 0.8401 0.0004 23 1 3.8745 -0.6802 0.8911 24 1 3.8752 -0.6805 -0.8888 25 1 6.2217 -2.1486 0.8910 26 1 6.2217 -2.1485 -0.8890 27 1 6.2847 -4.6269 -0.8900 28 1 6.2847 -4.6279 0.8900 29 1 7.0610 -6.3569 -0.0101 30 1 8.4207 -8.4085 -0.0019 31 1 11.9813 -6.0573 0.0014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413010663.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:12:16 Heat of formation + Delta-G solvation = -35.577922 kcal Electronic energy + Delta-G solvation = -16898.623551 eV Core-core repulsion = 13744.198437 eV Total energy + Delta-G solvation = -3154.425114 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 305.999 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.60698 -38.21267 -36.94495 -36.40832 -33.12317 -32.11395 -31.36741 -29.62608 -29.43579 -24.68145 -23.09939 -22.71402 -21.79723 -18.88352 -17.13231 -17.01225 -16.70540 -16.49711 -15.56879 -15.12879 -14.53578 -14.42431 -14.35665 -14.10933 -13.40724 -13.12835 -12.91682 -12.71773 -12.44568 -12.39533 -12.30482 -11.68356 -11.42637 -11.26991 -11.17606 -10.90669 -10.80107 -10.56333 -10.20772 -9.75433 -9.42293 -9.15252 -8.78558 -8.51081 -6.99939 -6.25248 -4.28456 0.58994 0.68501 1.53631 1.89313 2.04132 3.01678 3.13485 3.16636 3.24141 3.25164 3.48420 4.22991 4.24589 4.38506 4.56827 4.76045 4.79484 4.87791 5.05894 5.14420 5.16985 5.30034 5.59735 5.62412 5.68130 5.81377 5.97832 6.47836 6.58627 6.90118 7.32812 8.21786 8.76359 9.29767 10.86602 Molecular weight = 306.00amu Principal moments of inertia in cm(-1) A = 0.029413 B = 0.002507 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.735696 B =11166.871056 C =12092.857555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.081 3.919 3 Si 0.878 3.122 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.085 0.915 9 C 0.052 3.948 10 S -0.253 6.253 11 C -0.105 4.105 12 C 0.078 3.922 13 O -0.298 6.298 14 C 0.155 3.845 15 C -0.186 4.186 16 C -0.061 4.061 17 C -0.068 4.068 18 Cl -0.063 7.063 19 C -0.064 4.064 20 C -0.064 4.064 21 Cl -0.044 7.044 22 H 0.269 0.731 23 H 0.038 0.962 24 H 0.033 0.967 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.151 0.849 30 H 0.143 0.857 31 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.349 -13.887 0.010 27.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.124 4.124 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.103 0.897 9 C -0.096 4.096 10 S -0.027 6.027 11 C -0.253 4.253 12 C 0.002 3.998 13 O -0.211 6.211 14 C 0.107 3.893 15 C -0.206 4.206 16 C -0.080 4.080 17 C -0.095 4.095 18 Cl -0.034 7.034 19 C -0.084 4.084 20 C -0.092 4.092 21 Cl -0.015 7.015 22 H 0.079 0.921 23 H 0.056 0.944 24 H 0.051 0.949 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.168 0.832 30 H 0.161 0.839 31 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 22.804 -14.470 0.011 27.008 hybrid contribution 1.024 1.931 -0.014 2.186 sum 23.828 -12.539 -0.003 26.926 Atomic orbital electron populations 1.69861 1.06145 1.27415 1.49182 1.24842 0.94773 0.98742 0.94035 0.86809 0.80313 0.83545 0.78890 1.19809 1.20695 1.19038 1.20435 0.86720 0.95391 1.53107 0.89743 1.21450 1.01117 0.87590 0.99420 1.86656 0.98021 1.19951 1.98044 1.23189 0.97810 0.98390 1.05958 1.22627 0.76294 0.97994 1.02869 1.86183 1.19628 1.28101 1.87168 1.18762 0.89565 0.86542 0.94450 1.21307 1.01501 0.90531 1.07220 1.20971 0.91330 0.99428 0.96290 1.20574 0.91864 0.87586 1.09523 1.98377 1.71790 1.36095 1.97158 1.20722 1.00718 0.88615 0.98299 1.19997 0.89587 0.88231 1.11347 1.98392 1.80122 1.26054 1.96976 0.92106 0.94425 0.94886 0.89560 0.89567 0.90571 0.90579 0.83163 0.83904 0.83369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.96 55.43 0.77 -25.59 16 2 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 3 Si 0.88 20.55 27.47 -169.99 -4.67 15.88 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -5.94 6.54 56.52 0.37 -5.57 16 7 C -0.52 -14.38 9.68 -34.44 -0.33 -14.71 16 8 H 0.08 2.57 7.96 -52.48 -0.42 2.15 16 9 C 0.05 1.21 4.77 36.00 0.17 1.38 16 10 S -0.25 -4.94 21.66 -107.50 -2.33 -7.27 16 11 C -0.11 -1.57 6.31 37.16 0.23 -1.34 16 12 C 0.08 0.94 4.75 37.16 0.18 1.12 16 13 O -0.30 -3.72 9.60 -19.57 -0.19 -3.91 16 14 C 0.16 1.71 6.68 -39.20 -0.26 1.45 16 15 C -0.19 -1.70 9.04 -39.44 -0.36 -2.06 16 16 C -0.06 -0.50 9.82 -39.56 -0.39 -0.89 16 17 C -0.07 -0.58 6.32 -39.49 -0.25 -0.83 16 18 Cl -0.06 -0.49 28.95 -51.86 -1.50 -1.99 16 19 C -0.06 -0.57 9.61 -39.54 -0.38 -0.95 16 20 C -0.06 -0.67 6.33 -39.37 -0.25 -0.92 16 21 Cl -0.04 -0.48 28.50 -51.86 -1.48 -1.96 16 22 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 23 H 0.04 0.86 7.20 -51.93 -0.37 0.49 16 24 H 0.03 0.75 7.57 -51.92 -0.39 0.35 16 25 H 0.09 1.27 8.14 -51.92 -0.42 0.85 16 26 H 0.09 1.26 8.14 -51.92 -0.42 0.84 16 27 H 0.08 0.85 7.65 -51.93 -0.40 0.45 16 28 H 0.08 0.85 7.67 -51.92 -0.40 0.45 16 29 H 0.15 1.18 6.30 -52.49 -0.33 0.85 16 30 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 31 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 314.72 15.07 4.74 4.74 Total: -1.00 -29.11 314.72 -9.55 -38.66 By element: Atomic # 1 Polarization: 0.18 SS G_CDS: -3.17 Total: -2.99 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -1.73 Total: -15.57 kcal Atomic # 7 Polarization: -26.36 SS G_CDS: 0.77 Total: -25.59 kcal Atomic # 8 Polarization: -3.72 SS G_CDS: -0.19 Total: -3.91 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.67 Total: 15.88 kcal Atomic # 16 Polarization: -4.94 SS G_CDS: -2.33 Total: -7.27 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -2.98 Total: -3.95 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.11 -9.55 -38.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413010663.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.084 kcal (2) G-P(sol) polarization free energy of solvation -29.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds