Wall clock time and date at job start Tue Mar 31 2020 09:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99937 * 2 1 4 4 H 1.48500 * 109.47069 * 270.00182 * 3 2 1 5 5 H 1.48499 * 109.47018 * 30.00321 * 3 2 1 6 6 H 1.48500 * 109.46983 * 149.99909 * 3 2 1 7 7 C 1.37878 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99973 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99825 * 359.97438 * 7 2 1 10 10 S 1.81401 * 109.46851 * 180.02562 * 9 7 2 11 11 C 1.81404 * 102.99823 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47215 * 179.97438 * 11 10 9 13 13 O 1.42894 * 109.47130 * 180.02562 * 12 11 10 14 14 C 1.35905 * 116.99735 * 179.97438 * 13 12 11 15 15 C 1.38717 * 120.04369 * 359.73114 * 14 13 12 16 16 C 1.38262 * 119.95812 * 180.29386 * 15 14 13 17 17 Cl 1.73601 * 119.98006 * 179.97438 * 16 15 14 18 18 C 1.38372 * 120.04106 * 359.97438 * 16 15 14 19 19 C 1.38359 * 120.08371 * 359.97438 * 18 16 15 20 20 Cl 1.73599 * 119.97647 * 179.97438 * 19 18 16 21 21 C 1.38260 * 120.04588 * 0.02562 * 19 18 16 22 22 H 0.97003 * 120.00518 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47205 * 60.00250 * 9 7 2 24 24 H 1.09003 * 109.47170 * 300.00301 * 9 7 2 25 25 H 1.09006 * 109.46914 * 59.99961 * 11 10 9 26 26 H 1.08994 * 109.47353 * 300.00152 * 11 10 9 27 27 H 1.08998 * 109.47176 * 59.99983 * 12 11 10 28 28 H 1.09002 * 109.47126 * 300.00153 * 12 11 10 29 29 H 1.07999 * 120.01876 * 0.24223 * 15 14 13 30 30 H 1.08000 * 119.95684 * 179.97438 * 18 16 15 31 31 H 1.08003 * 120.02482 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 16 2.4299 -3.8779 -0.0005 11 6 1.3516 -5.3366 0.0003 12 6 2.2084 -6.6042 -0.0003 13 8 1.3591 -7.7533 -0.0003 14 6 1.9661 -8.9692 -0.0013 15 6 3.3507 -9.0542 -0.0079 16 6 3.9664 -10.2922 -0.0151 17 17 5.6991 -10.3992 -0.0241 18 6 3.2024 -11.4458 -0.0151 19 6 1.8213 -11.3631 -0.0075 20 17 0.8655 -12.8123 -0.0082 21 6 1.2019 -10.1270 -0.0003 22 1 -0.4851 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6246 -2.5570 0.8897 25 1 0.7221 -5.3236 -0.8896 26 1 0.7227 -5.3232 0.8904 27 1 2.8382 -6.6175 0.8892 28 1 2.8370 -6.6175 -0.8907 29 1 3.9473 -8.1540 -0.0083 30 1 3.6848 -12.4121 -0.0211 31 1 0.1238 -10.0628 0.0053 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413011862.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:12:18 Heat of formation + Delta-G solvation = -41.899032 kcal Electronic energy + Delta-G solvation = -16751.287720 eV Core-core repulsion = 13596.588503 eV Total energy + Delta-G solvation = -3154.699218 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 305.999 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.57215 -38.25909 -37.14655 -36.38474 -33.22267 -32.12465 -31.01368 -29.89814 -28.62604 -24.53330 -23.21921 -23.02430 -21.86354 -18.91547 -16.80429 -16.63240 -16.46213 -16.41832 -15.75163 -15.20686 -14.79385 -14.47303 -14.37072 -14.08917 -13.34670 -12.72559 -12.68785 -12.60581 -12.50663 -12.24720 -12.21833 -11.63363 -11.41292 -11.40157 -11.31906 -10.92877 -10.76349 -10.69955 -10.12004 -9.66479 -9.19741 -9.03501 -8.69852 -8.67954 -6.86518 -6.26021 -4.31045 0.53802 0.77171 1.34986 1.84257 2.13560 3.04482 3.22538 3.25820 3.28832 3.33877 3.69175 4.30177 4.48963 4.55401 4.58547 4.65996 4.82061 4.87097 5.04049 5.11409 5.27880 5.57885 5.65446 5.66715 5.71775 5.88310 5.99419 6.98812 6.99581 7.01833 7.67986 7.91940 8.70634 9.32613 10.85220 Molecular weight = 306.00amu Principal moments of inertia in cm(-1) A = 0.025587 B = 0.002351 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.045009 B =11908.575448 C =12976.860770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.066 3.934 3 Si 0.908 3.092 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.515 4.515 8 H 0.068 0.932 9 C 0.096 3.904 10 S -0.291 6.291 11 C -0.097 4.097 12 C 0.077 3.923 13 O -0.303 6.303 14 C 0.168 3.832 15 C -0.198 4.198 16 C 0.018 3.982 17 Cl -0.053 7.053 18 C -0.147 4.147 19 C 0.014 3.986 20 Cl -0.051 7.051 21 C -0.144 4.144 22 H 0.267 0.733 23 H 0.038 0.962 24 H 0.038 0.962 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.149 0.851 30 H 0.145 0.855 31 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.616 -24.313 -0.018 24.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.735 3.265 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.555 4.555 8 H 0.086 0.914 9 C -0.051 4.051 10 S -0.065 6.065 11 C -0.245 4.245 12 C 0.002 3.998 13 O -0.216 6.216 14 C 0.120 3.880 15 C -0.218 4.218 16 C -0.009 4.009 17 Cl -0.024 7.024 18 C -0.166 4.166 19 C -0.013 4.013 20 Cl -0.022 7.022 21 C -0.163 4.163 22 H 0.076 0.924 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.167 0.833 30 H 0.162 0.838 31 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 5.410 -24.243 -0.015 24.839 hybrid contribution -0.721 0.793 -0.008 1.072 sum 4.689 -23.450 -0.024 23.914 Atomic orbital electron populations 1.69946 1.06168 1.27507 1.49351 1.24964 0.94989 0.99324 0.94526 0.86326 0.79727 0.82061 0.78407 1.20280 1.20918 1.19504 1.20649 0.93509 0.88581 1.52720 0.91368 1.21097 0.93414 0.90191 1.00408 1.86570 1.20525 1.01293 1.98146 1.23106 1.01185 0.94272 1.05909 1.22672 0.92513 0.81813 1.02807 1.86126 1.36358 1.11673 1.87439 1.18571 0.89980 0.85833 0.93638 1.21324 0.93972 0.98258 1.08241 1.20415 0.85333 0.93719 1.01472 1.98401 1.08810 1.98553 1.96632 1.20749 0.91446 0.98604 1.05817 1.20305 0.91051 0.87765 1.02157 1.98396 1.71515 1.35626 1.96705 1.20327 1.01418 0.88231 1.06327 0.92375 0.94332 0.94333 0.89618 0.89612 0.90673 0.90680 0.83341 0.83765 0.83334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.47 13.29 55.43 0.74 -24.73 16 2 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.91 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.52 -14.16 9.13 -34.44 -0.31 -14.47 16 8 H 0.07 1.87 7.71 -52.48 -0.40 1.46 16 9 C 0.10 2.40 5.70 36.00 0.21 2.61 16 10 S -0.29 -5.95 21.66 -107.50 -2.33 -8.27 16 11 C -0.10 -1.54 6.31 37.16 0.23 -1.30 16 12 C 0.08 1.00 4.75 37.16 0.18 1.18 16 13 O -0.30 -3.85 10.14 -19.44 -0.20 -4.05 16 14 C 0.17 1.88 6.69 -39.22 -0.26 1.62 16 15 C -0.20 -2.07 8.82 -39.40 -0.35 -2.42 16 16 C 0.02 0.17 6.32 -39.52 -0.25 -0.08 16 17 Cl -0.05 -0.48 28.95 -51.86 -1.50 -1.99 16 18 C -0.15 -1.31 9.61 -39.49 -0.38 -1.69 16 19 C 0.01 0.13 6.32 -39.53 -0.25 -0.12 16 20 Cl -0.05 -0.43 28.95 -51.86 -1.50 -1.93 16 21 C -0.14 -1.44 9.77 -39.39 -0.38 -1.83 16 22 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 23 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 24 H 0.04 1.01 8.14 -51.92 -0.42 0.58 16 25 H 0.09 1.35 8.14 -51.92 -0.42 0.93 16 26 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.08 0.92 7.67 -51.93 -0.40 0.52 16 28 H 0.07 0.91 7.65 -51.93 -0.40 0.52 16 29 H 0.15 1.46 6.30 -52.49 -0.33 1.13 16 30 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.15 1.34 8.06 -52.48 -0.42 0.91 16 LS Contribution 319.03 15.07 4.81 4.81 Total: -1.00 -27.81 319.03 -9.88 -37.68 By element: Atomic # 1 Polarization: 0.53 SS G_CDS: -3.20 Total: -2.67 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -1.67 Total: -14.77 kcal Atomic # 7 Polarization: -25.47 SS G_CDS: 0.74 Total: -24.73 kcal Atomic # 8 Polarization: -3.85 SS G_CDS: -0.20 Total: -4.05 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: -5.95 SS G_CDS: -2.33 Total: -8.27 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -3.00 Total: -3.91 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.81 -9.88 -37.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413011862.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.215 kcal (2) G-P(sol) polarization free energy of solvation -27.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds