Wall clock time and date at job start Tue Mar 31 2020 09:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99910 * 2 1 4 4 H 1.48497 * 109.46933 * 239.99761 * 3 2 1 5 5 H 1.48505 * 109.46874 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47125 * 119.99368 * 3 2 1 7 7 C 1.37879 * 120.00302 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00251 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99888 * 0.02562 * 7 2 1 10 10 S 1.81401 * 109.47130 * 179.97438 * 9 7 2 11 11 C 1.81408 * 102.99864 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46799 * 179.97438 * 11 10 9 13 13 O 1.42903 * 109.46726 * 180.02562 * 12 11 10 14 14 C 1.35925 * 116.99722 * 180.02562 * 13 12 11 15 15 C 1.38692 * 120.05493 * 359.72114 * 14 13 12 16 16 C 1.38264 * 119.94575 * 179.77029 * 15 14 13 17 17 Cl 1.73600 * 119.97291 * 180.25687 * 16 15 14 18 18 C 1.38393 * 120.04918 * 0.50823 * 16 15 14 19 19 C 1.38229 * 120.10535 * 359.74784 * 18 16 15 20 20 C 1.38264 * 120.05613 * 359.97438 * 19 18 16 21 21 Cl 1.73597 * 120.02560 * 179.97438 * 20 19 18 22 22 H 0.97001 * 120.00368 * 0.02562 * 1 2 3 23 23 H 1.09007 * 109.46974 * 59.99695 * 9 7 2 24 24 H 1.08997 * 109.47444 * 300.00006 * 9 7 2 25 25 H 1.09001 * 109.46823 * 60.00210 * 11 10 9 26 26 H 1.08992 * 109.47429 * 300.00246 * 11 10 9 27 27 H 1.09002 * 109.47398 * 300.00340 * 12 11 10 28 28 H 1.09001 * 109.47194 * 60.00520 * 12 11 10 29 29 H 1.08005 * 120.02764 * 0.02562 * 15 14 13 30 30 H 1.07999 * 119.94611 * 179.72093 * 18 16 15 31 31 H 1.07998 * 119.97278 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 16 2.4300 -3.8779 0.0005 11 6 1.3516 -5.3367 -0.0003 12 6 2.2086 -6.6042 -0.0010 13 8 1.3591 -7.7534 -0.0022 14 6 1.9663 -8.9695 -0.0024 15 6 3.3506 -9.0547 -0.0073 16 6 3.9658 -10.2929 -0.0028 17 17 5.6985 -10.4004 -0.0021 18 6 3.2014 -11.4466 -0.0039 19 6 1.8216 -11.3641 -0.0044 20 6 1.2018 -10.1282 -0.0032 21 17 -0.5311 -10.0255 -0.0044 22 1 -0.4851 0.8400 -0.0004 23 1 0.6247 -2.5570 -0.8897 24 1 0.6241 -2.5567 0.8902 25 1 0.7228 -5.3232 -0.8905 26 1 0.7222 -5.3237 0.8894 27 1 2.8378 -6.6169 -0.8909 28 1 2.8377 -6.6180 0.8890 29 1 3.9475 -8.1546 -0.0106 30 1 3.6838 -12.4129 -0.0049 31 1 1.2272 -12.2658 -0.0057 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413012323.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:12:33 Heat of formation + Delta-G solvation = -40.414096 kcal Electronic energy + Delta-G solvation = -16930.610222 eV Core-core repulsion = 13775.975396 eV Total energy + Delta-G solvation = -3154.634826 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 305.999 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.55532 -38.12143 -36.98933 -36.36619 -33.20637 -32.03200 -31.11678 -29.73500 -28.60784 -24.60664 -23.16648 -22.90654 -21.88467 -18.87918 -16.84571 -16.70480 -16.46539 -16.42600 -15.66232 -15.20219 -14.52304 -14.39308 -14.33324 -14.10624 -13.20805 -12.69564 -12.65572 -12.59785 -12.55304 -12.22367 -12.13167 -11.54486 -11.34661 -11.25497 -11.09201 -10.91838 -10.80589 -10.77621 -10.09902 -9.66400 -9.25720 -9.01651 -8.65997 -8.54355 -6.84260 -6.24296 -4.29447 0.53576 0.82815 1.63021 1.90866 2.11685 3.05771 3.21891 3.25449 3.28921 3.33173 3.71169 4.26133 4.31491 4.55008 4.57723 4.82451 4.89637 4.92724 5.12928 5.13730 5.30140 5.40546 5.62844 5.71223 5.74952 5.94267 6.06014 6.95858 7.01639 7.03903 7.69344 7.93706 8.71936 9.34041 10.86909 Molecular weight = 306.00amu Principal moments of inertia in cm(-1) A = 0.019763 B = 0.002715 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.423734 B =10309.471334 C =11700.145356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.067 3.933 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.516 4.516 8 H 0.068 0.932 9 C 0.096 3.904 10 S -0.291 6.291 11 C -0.095 4.095 12 C 0.077 3.923 13 O -0.295 6.295 14 C 0.163 3.837 15 C -0.193 4.193 16 C 0.010 3.990 17 Cl -0.058 7.058 18 C -0.143 4.143 19 C -0.060 4.060 20 C -0.071 4.071 21 Cl -0.048 7.048 22 H 0.267 0.733 23 H 0.038 0.962 24 H 0.038 0.962 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.151 0.849 30 H 0.143 0.857 31 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.599 -24.522 -0.011 24.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.735 3.265 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.086 0.914 9 C -0.051 4.051 10 S -0.066 6.066 11 C -0.243 4.243 12 C 0.002 3.998 13 O -0.208 6.208 14 C 0.114 3.886 15 C -0.212 4.212 16 C -0.017 4.017 17 Cl -0.029 7.029 18 C -0.162 4.162 19 C -0.079 4.079 20 C -0.099 4.099 21 Cl -0.019 7.019 22 H 0.077 0.923 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.168 0.832 30 H 0.161 0.839 31 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.316 -24.301 -0.011 24.875 hybrid contribution -0.758 0.942 0.000 1.209 sum 4.558 -23.358 -0.011 23.799 Atomic orbital electron populations 1.69939 1.06164 1.27602 1.49272 1.24961 0.94986 0.99300 0.94524 0.86386 0.79393 0.81729 0.79002 1.19854 1.21005 1.19848 1.20612 0.93474 0.88607 1.52837 0.91421 1.21088 0.93404 0.90161 1.00401 1.86547 1.20567 1.01324 1.98151 1.23093 1.01135 0.94172 1.05950 1.22679 0.92530 0.81899 1.02740 1.86205 1.35983 1.11462 1.87181 1.18519 0.89963 0.85553 0.94521 1.21178 0.93036 0.98480 1.08553 1.20725 0.85270 0.94299 1.01434 1.98397 1.09348 1.98556 1.96609 1.20889 0.92722 0.97879 1.04712 1.20848 0.93965 0.95841 0.97283 1.20300 0.85966 0.92417 1.11210 1.98390 1.07929 1.98604 1.96934 0.92326 0.94350 0.94342 0.89608 0.89604 0.90704 0.90698 0.83155 0.83912 0.83384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.91 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.52 -14.30 9.13 -34.44 -0.31 -14.61 16 8 H 0.07 1.86 7.71 -52.49 -0.40 1.46 16 9 C 0.10 2.45 5.70 36.00 0.21 2.65 16 10 S -0.29 -6.05 21.66 -107.50 -2.33 -8.37 16 11 C -0.10 -1.56 6.31 37.16 0.23 -1.33 16 12 C 0.08 1.04 4.75 37.16 0.18 1.21 16 13 O -0.30 -4.00 9.60 -19.51 -0.19 -4.19 16 14 C 0.16 1.94 6.68 -39.20 -0.26 1.67 16 15 C -0.19 -2.05 8.82 -39.40 -0.35 -2.40 16 16 C 0.01 0.09 6.32 -39.51 -0.25 -0.16 16 17 Cl -0.06 -0.52 28.95 -51.86 -1.50 -2.02 16 18 C -0.14 -1.13 9.83 -39.53 -0.39 -1.52 16 19 C -0.06 -0.49 9.82 -39.57 -0.39 -0.88 16 20 C -0.07 -0.76 6.33 -39.36 -0.25 -1.01 16 21 Cl -0.05 -0.53 28.50 -51.86 -1.48 -2.01 16 22 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 23 H 0.04 1.02 8.14 -51.92 -0.42 0.59 16 24 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 25 H 0.09 1.40 8.14 -51.92 -0.42 0.98 16 26 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 27 H 0.07 0.94 7.65 -51.93 -0.40 0.55 16 28 H 0.07 0.94 7.67 -51.93 -0.40 0.55 16 29 H 0.15 1.52 6.30 -52.48 -0.33 1.19 16 30 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 31 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 318.32 15.07 4.80 4.80 Total: -1.00 -28.65 318.32 -9.87 -38.51 By element: Atomic # 1 Polarization: -0.01 SS G_CDS: -3.20 Total: -3.21 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -1.68 Total: -14.63 kcal Atomic # 7 Polarization: -25.67 SS G_CDS: 0.74 Total: -24.93 kcal Atomic # 8 Polarization: -4.00 SS G_CDS: -0.19 Total: -4.19 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -6.05 SS G_CDS: -2.33 Total: -8.37 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -2.98 Total: -4.03 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.65 -9.87 -38.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413012323.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.903 kcal (2) G-P(sol) polarization free energy of solvation -28.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds