Wall clock time and date at job start Tue Mar 31 2020 09:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 119.99917 * 2 1 4 4 H 1.48494 * 109.47347 * 239.99929 * 3 2 1 5 5 H 1.48498 * 109.47316 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47072 * 120.00370 * 3 2 1 7 7 C 1.37883 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99589 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00036 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47344 * 180.02562 * 9 7 2 11 11 S 1.81391 * 109.47545 * 180.02562 * 10 9 7 12 12 O 1.42104 * 108.57884 * 65.51096 * 11 10 9 13 13 O 1.42104 * 108.57978 * 294.48980 * 11 10 9 14 14 C 1.81395 * 101.92561 * 179.97438 * 11 10 9 15 15 C 1.50695 * 109.47515 * 179.97438 * 14 11 10 16 16 C 1.38257 * 119.99444 * 269.97931 * 15 14 11 17 17 C 1.38225 * 120.06047 * 179.97438 * 16 15 14 18 18 C 1.38234 * 120.04998 * 0.03765 * 17 16 15 19 19 C 1.38397 * 119.98867 * 359.97438 * 18 17 16 20 20 F 1.35095 * 120.03322 * 179.97438 * 19 18 17 21 21 C 1.38279 * 119.99387 * 90.00265 * 15 14 11 22 22 Cl 1.73601 * 120.02549 * 0.27355 * 21 15 14 23 23 H 0.97000 * 120.00551 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47015 * 60.00422 * 9 7 2 25 25 H 1.08995 * 109.47521 * 300.00225 * 9 7 2 26 26 H 1.09000 * 109.46905 * 60.00128 * 10 9 7 27 27 H 1.09004 * 109.46659 * 300.00162 * 10 9 7 28 28 H 1.09002 * 109.47205 * 59.99800 * 14 11 10 29 29 H 1.09002 * 109.46980 * 300.00619 * 14 11 10 30 30 H 1.08000 * 119.96717 * 359.97438 * 16 15 14 31 31 H 1.08004 * 119.97245 * 180.02562 * 17 16 15 32 32 H 1.08003 * 120.00649 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 16 1.3382 -5.2331 -0.0013 12 8 0.6287 -5.3456 -1.2274 13 8 0.6279 -5.3464 1.2242 14 6 2.6878 -6.4451 -0.0020 15 6 2.1124 -7.8378 -0.0020 16 6 1.8493 -8.4770 1.1953 17 6 1.3209 -9.7543 1.1969 18 6 1.0555 -10.3950 0.0011 19 6 1.3183 -9.7572 -1.1987 20 9 1.0597 -10.3828 -2.3678 21 6 1.8480 -8.4765 -1.1997 22 17 2.1855 -7.6772 -2.7034 23 1 -0.4851 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8896 26 1 2.8718 -3.6044 0.8895 27 1 2.8718 -3.6044 -0.8906 28 1 3.3016 -6.3060 0.8880 29 1 3.3015 -6.3050 -0.8919 30 1 2.0567 -7.9778 2.1303 31 1 1.1155 -10.2521 2.1331 32 1 0.6423 -11.3929 0.0032 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414423699.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:21:47 Heat of formation + Delta-G solvation = -104.696122 kcal Electronic energy + Delta-G solvation = -20258.803751 eV Core-core repulsion = 16673.045072 eV Total energy + Delta-G solvation = -3585.758679 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 306.028 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.20233 -39.63294 -36.72102 -36.48693 -35.55129 -33.90404 -33.30777 -31.20743 -30.76283 -27.92283 -25.59948 -23.15823 -22.56401 -21.36963 -18.51934 -17.83000 -17.11918 -17.03884 -16.73598 -16.13278 -15.75654 -15.61991 -15.33705 -14.68850 -14.53629 -14.13336 -13.84995 -13.46632 -13.18845 -12.77229 -12.51343 -12.36503 -11.90234 -11.81607 -11.76455 -11.56114 -11.50774 -11.07430 -11.02238 -10.96733 -10.94192 -10.40784 -10.37819 -9.73969 -9.29035 -8.99098 -8.96155 -8.50023 -6.12256 -4.18463 0.12926 0.65317 0.83904 1.81157 3.06597 3.15639 3.27012 3.32050 3.33573 3.59739 3.91624 4.17904 4.26310 4.37141 4.51068 4.60446 4.80310 4.93036 4.99983 5.22708 5.34798 5.48619 5.58563 5.60029 5.65158 5.77032 5.90814 6.32097 6.44609 7.32528 7.38168 7.79911 8.16332 8.84783 9.46105 10.98577 Molecular weight = 306.03amu Principal moments of inertia in cm(-1) A = 0.030957 B = 0.003576 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.275799 B = 7827.877716 C = 8242.497328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.523 4.523 8 H 0.061 0.939 9 C 0.029 3.971 10 C -0.570 4.570 11 S 2.393 3.607 12 O -0.925 6.925 13 O -0.937 6.937 14 C -0.596 4.596 15 C -0.044 4.044 16 C -0.104 4.104 17 C -0.084 4.084 18 C -0.140 4.140 19 C 0.110 3.890 20 F -0.125 7.125 21 C -0.067 4.067 22 Cl -0.029 7.029 23 H 0.266 0.734 24 H 0.037 0.963 25 H 0.035 0.965 26 H 0.121 0.879 27 H 0.122 0.878 28 H 0.148 0.852 29 H 0.145 0.855 30 H 0.148 0.852 31 H 0.146 0.854 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.460 -20.562 1.282 21.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.563 4.563 8 H 0.080 0.920 9 C -0.009 4.009 10 C -0.703 4.703 11 S 2.576 3.424 12 O -0.923 6.923 13 O -0.934 6.934 14 C -0.718 4.718 15 C -0.046 4.046 16 C -0.123 4.123 17 C -0.102 4.102 18 C -0.160 4.160 19 C 0.090 3.910 20 F -0.103 7.103 21 C -0.096 4.096 22 Cl 0.001 6.999 23 H 0.076 0.924 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.139 0.861 27 H 0.140 0.860 28 H 0.166 0.834 29 H 0.163 0.837 30 H 0.166 0.834 31 H 0.163 0.837 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.425 -20.607 1.086 21.337 hybrid contribution 1.397 0.952 -0.390 1.735 sum 6.821 -19.655 0.697 20.816 Atomic orbital electron populations 1.69946 1.06114 1.27332 1.49297 1.25062 0.94971 0.99496 0.94873 0.86529 0.79501 0.82530 0.78708 1.20058 1.21051 1.20063 1.20975 0.93038 0.89729 1.52530 0.92049 1.18990 0.92680 0.90010 0.99263 1.30228 1.13440 1.16487 1.10122 1.09137 0.78413 0.78922 0.75880 1.93579 1.68188 1.85488 1.45002 1.93544 1.68383 1.85835 1.45655 1.29734 1.20886 1.08283 1.12893 1.18742 0.99736 0.94377 0.91707 1.21266 0.98543 0.95042 0.97495 1.21128 0.96662 0.94350 0.98081 1.21217 1.02586 1.01667 0.90497 1.17321 1.01091 0.90113 0.82448 1.91549 1.91601 1.81559 1.45580 1.20969 1.05737 0.93471 0.89385 1.98419 1.93199 1.78814 1.29488 0.92441 0.94518 0.94628 0.86073 0.85992 0.83369 0.83732 0.83385 0.83668 0.83460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.74 4.98 -27.88 -0.14 0.60 16 10 C -0.57 -10.39 5.74 37.16 0.21 -10.17 16 11 S 2.39 40.86 4.70 -107.50 -0.51 40.36 16 12 O -0.93 -18.66 17.58 -57.83 -1.02 -19.68 16 13 O -0.94 -18.43 18.10 -57.83 -1.05 -19.48 16 14 C -0.60 -7.01 5.54 36.00 0.20 -6.81 16 15 C -0.04 -0.55 5.14 -104.60 -0.54 -1.08 16 16 C -0.10 -1.07 9.70 -39.58 -0.38 -1.46 16 17 C -0.08 -0.71 10.04 -39.59 -0.40 -1.10 16 18 C -0.14 -1.28 10.03 -39.52 -0.40 -1.68 16 19 C 0.11 1.33 7.28 -39.39 -0.29 1.04 16 20 F -0.12 -1.55 16.84 2.25 0.04 -1.51 16 21 C -0.07 -0.90 6.32 -39.43 -0.25 -1.15 16 22 Cl -0.03 -0.40 26.44 -51.86 -1.37 -1.77 16 23 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 24 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.12 1.88 8.14 -51.92 -0.42 1.45 16 27 H 0.12 1.94 8.14 -51.92 -0.42 1.52 16 28 H 0.15 1.19 8.08 -51.92 -0.42 0.77 16 29 H 0.14 1.49 6.90 -51.92 -0.36 1.13 16 30 H 0.15 1.22 8.06 -52.49 -0.42 0.79 16 31 H 0.15 0.73 8.06 -52.48 -0.42 0.31 16 32 H 0.15 0.92 8.06 -52.48 -0.42 0.49 16 LS Contribution 314.90 15.07 4.75 4.75 Total: -1.00 -34.90 314.90 -9.11 -44.01 By element: Atomic # 1 Polarization: 1.14 SS G_CDS: -3.28 Total: -2.14 kcal Atomic # 6 Polarization: -32.49 SS G_CDS: -2.39 Total: -34.88 kcal Atomic # 7 Polarization: -26.38 SS G_CDS: 0.74 Total: -25.65 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: -2.06 Total: -39.16 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 40.86 SS G_CDS: -0.51 Total: 40.36 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.37 Total: -1.77 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.90 -9.11 -44.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414423699.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.688 kcal (2) G-P(sol) polarization free energy of solvation -34.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds