Wall clock time and date at job start Tue Mar 31 2020 08:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47261 * 2 1 4 4 C 1.53004 * 109.46897 * 239.99991 * 2 1 3 5 5 C 1.50696 * 109.47314 * 60.00095 * 4 2 1 6 6 H 1.08005 * 119.99687 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00068 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99577 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 120.00145 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46889 * 89.99975 * 9 7 5 11 11 H 1.48498 * 109.47504 * 209.99927 * 9 7 5 12 12 H 1.48504 * 109.46913 * 329.99994 * 9 7 5 13 13 C 1.52998 * 109.46854 * 120.00232 * 2 1 3 14 14 N 1.46902 * 109.47125 * 299.99586 * 13 2 1 15 15 C 1.46904 * 110.99643 * 180.02562 * 14 13 2 16 16 C 1.50706 * 109.46698 * 179.97438 * 15 14 13 17 17 C 1.35311 * 126.12159 * 95.02834 * 16 15 14 18 18 C 1.39872 * 107.91683 * 179.97438 * 17 16 15 19 19 N 1.30828 * 108.20306 * 359.97438 * 18 17 16 20 20 N 1.34940 * 126.13005 * 274.71578 * 16 15 14 21 21 C 1.46503 * 126.03754 * 0.03469 * 20 16 15 22 22 C 1.54266 * 110.03487 * 237.90839 * 21 20 16 23 23 C 1.54964 * 104.16045 * 217.13414 * 22 21 20 24 24 C 1.54891 * 102.77631 * 37.88975 * 23 22 21 25 25 C 1.53878 * 110.03454 * 120.68845 * 21 20 16 26 26 H 1.09001 * 109.47095 * 299.99937 * 1 2 3 27 27 H 1.09003 * 109.47194 * 59.99674 * 1 2 3 28 28 H 1.09003 * 109.47591 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47193 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47236 * 300.00100 * 3 2 1 31 31 H 1.09001 * 109.47015 * 60.00013 * 3 2 1 32 32 H 1.09008 * 109.46639 * 180.02562 * 4 2 1 33 33 H 1.08999 * 109.47116 * 299.99649 * 4 2 1 34 34 H 0.97008 * 119.99652 * 179.97438 * 8 7 5 35 35 H 1.09008 * 109.47168 * 180.02562 * 13 2 1 36 36 H 1.08999 * 109.47743 * 59.99993 * 13 2 1 37 37 H 1.00897 * 110.99844 * 56.05044 * 14 13 2 38 38 H 1.09005 * 109.47113 * 60.00420 * 15 14 13 39 39 H 1.08998 * 109.47330 * 300.00245 * 15 14 13 40 40 H 1.08004 * 126.04441 * 359.97438 * 17 16 15 41 41 H 1.08009 * 125.89772 * 180.02562 * 18 17 16 42 42 H 1.09007 * 110.01650 * 359.29974 * 21 20 16 43 43 H 1.09002 * 110.48512 * 335.78487 * 22 21 20 44 44 H 1.09003 * 110.48294 * 98.42723 * 22 21 20 45 45 H 1.08992 * 110.71982 * 279.57198 * 23 22 21 46 46 H 1.09007 * 110.76147 * 156.22121 * 23 22 21 47 47 H 1.08998 * 110.48444 * 203.40136 * 24 23 22 48 48 H 1.09002 * 110.59830 * 80.81761 * 24 23 22 49 49 H 1.08998 * 110.03263 * 238.57241 * 25 21 20 50 50 H 1.09010 * 110.02737 * 359.95628 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9164 0.8670 -2.3806 7 6 1.8711 -0.4817 -3.7320 8 7 1.4331 0.1386 -4.8057 9 14 2.9461 -1.9996 -3.9034 10 1 2.0884 -3.2110 -3.9489 11 1 3.7380 -1.9065 -5.1562 12 1 3.8666 -2.0881 -2.7414 13 6 2.0399 -0.7213 1.2492 14 7 1.5503 -0.0288 2.4487 15 6 2.0218 -0.6947 3.6703 16 6 1.5012 0.0427 4.8771 17 6 0.3809 -0.2582 5.5738 18 6 0.2600 0.6679 6.6150 19 7 1.2716 1.4946 6.5462 20 7 2.0718 1.1176 5.4601 21 6 3.3083 1.7759 5.0310 22 6 4.3332 1.7784 6.1840 23 6 5.0463 3.1481 6.0543 24 6 3.8934 4.0969 5.6427 25 6 3.0290 3.2493 4.6865 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1299 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.1300 -0.7217 -1.2490 33 1 1.6766 -1.7489 -1.2492 34 1 1.6680 -0.1924 -5.6868 35 1 3.1300 -0.7209 1.2495 36 1 1.6766 -1.7490 1.2493 37 1 0.5438 0.0413 2.4402 38 1 3.1117 -0.6941 3.6868 39 1 1.6587 -1.7223 3.6873 40 1 -0.2997 -1.0699 5.3632 41 1 -0.5314 0.6952 7.3496 42 1 3.7232 1.2618 4.1639 43 1 3.8258 1.7022 7.1457 44 1 5.0464 0.9631 6.0622 45 1 5.8123 3.1122 5.2798 46 1 5.4749 3.4526 7.0092 47 1 4.2861 4.9729 5.1265 48 1 3.3139 4.3976 6.5156 49 1 3.3090 3.4506 3.6525 50 1 1.9732 3.4744 4.8378 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449332313.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:46 Heat of formation + Delta-G solvation = 53.341199 kcal Electronic energy + Delta-G solvation = -25740.171426 eV Core-core repulsion = 22381.916740 eV Total energy + Delta-G solvation = -3358.254686 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.38541 -38.03676 -37.82746 -34.76338 -32.43336 -32.08360 -30.36536 -28.99014 -27.75246 -27.49353 -26.41922 -26.20939 -24.16204 -22.16897 -21.83917 -20.98340 -20.50957 -19.23743 -18.03268 -17.08095 -16.74148 -15.91118 -15.59682 -15.13968 -14.89154 -14.44406 -14.28618 -13.90109 -13.85433 -13.57104 -13.54643 -13.39353 -12.91495 -12.61265 -12.21160 -12.11238 -11.91212 -11.81185 -11.75750 -11.38385 -11.37032 -11.19086 -11.10134 -10.98662 -10.89108 -10.81668 -10.54867 -10.51204 -10.38351 -9.85267 -9.70932 -9.42996 -9.23914 -8.93664 -8.57612 -8.51608 -8.28207 -6.01718 -3.98095 1.81271 2.44725 2.79422 3.30189 3.38283 3.40958 4.19342 4.25960 4.33870 4.46341 4.53318 4.67412 4.78083 4.99920 5.02295 5.18536 5.22301 5.29845 5.31185 5.37992 5.40855 5.49733 5.54366 5.55771 5.62161 5.64882 5.70741 5.82083 5.82901 5.93781 6.01339 6.07525 6.08562 6.11280 6.19260 6.36644 6.55358 6.63596 6.64379 6.75895 6.97829 7.04787 7.09543 7.12552 7.20675 7.29337 7.40842 7.50928 7.72672 7.83144 8.57786 9.04183 9.61224 11.11400 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.018487 B = 0.003148 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.230585 B = 8891.444425 C = 9537.899273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.048 4.048 3 C -0.117 4.117 4 C -0.004 4.004 5 C -0.508 4.508 6 H 0.078 0.922 7 C 0.065 3.935 8 N -0.905 5.905 9 Si 0.876 3.124 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.067 3.933 14 N -0.681 5.681 15 C 0.116 3.884 16 C 0.096 3.904 17 C -0.276 4.276 18 C 0.040 3.960 19 N -0.295 5.295 20 N -0.347 5.347 21 C 0.159 3.841 22 C -0.133 4.133 23 C -0.122 4.122 24 C -0.121 4.121 25 C -0.127 4.127 26 H 0.035 0.965 27 H 0.070 0.930 28 H 0.040 0.960 29 H 0.038 0.962 30 H 0.060 0.940 31 H 0.043 0.957 32 H 0.014 0.986 33 H 0.008 0.992 34 H 0.261 0.739 35 H 0.067 0.933 36 H 0.027 0.973 37 H 0.346 0.654 38 H 0.079 0.921 39 H 0.055 0.945 40 H 0.142 0.858 41 H 0.179 0.821 42 H 0.108 0.892 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.070 0.930 47 H 0.068 0.932 48 H 0.068 0.932 49 H 0.078 0.922 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.566 1.697 23.528 23.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.048 4.048 3 C -0.174 4.174 4 C -0.041 4.041 5 C -0.546 4.546 6 H 0.096 0.904 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.703 3.297 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.061 4.061 14 N -0.314 5.314 15 C -0.015 4.015 16 C -0.033 4.033 17 C -0.306 4.306 18 C -0.145 4.145 19 N -0.117 5.117 20 N -0.130 5.130 21 C 0.057 3.943 22 C -0.171 4.171 23 C -0.160 4.160 24 C -0.159 4.159 25 C -0.165 4.165 26 H 0.054 0.946 27 H 0.089 0.911 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.033 0.967 33 H 0.026 0.974 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.045 0.955 37 H 0.166 0.834 38 H 0.098 0.902 39 H 0.073 0.927 40 H 0.160 0.840 41 H 0.196 0.804 42 H 0.126 0.874 43 H 0.099 0.901 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.087 0.913 49 H 0.097 0.903 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.779 3.240 23.804 24.495 hybrid contribution -0.504 -2.490 -0.670 2.627 sum 4.276 0.749 23.135 23.538 Atomic orbital electron populations 1.21786 0.95517 1.00526 1.01012 1.20414 0.95151 0.96142 0.93116 1.21606 0.99577 0.95525 1.00730 1.19625 0.95996 0.95244 0.93276 1.21129 1.31506 1.13246 0.88675 0.90433 1.25018 0.95794 0.96744 0.96028 1.69910 1.46114 1.40603 0.97842 0.86848 0.81303 0.83985 0.77517 1.20503 1.21548 1.19152 1.22178 0.99766 0.94885 0.89284 1.60587 1.17269 1.53259 1.00269 1.20486 1.00232 0.94601 0.86136 1.21002 0.95123 0.90772 0.96392 1.21233 1.01445 1.06674 1.01270 1.23745 0.97597 0.93930 0.99257 1.77265 1.05187 1.23237 1.05967 1.48734 1.19785 1.22348 1.22091 1.22047 0.80453 0.94353 0.97429 1.22768 0.97149 0.98269 0.98901 1.22474 0.97612 0.94216 1.01663 1.22328 0.96380 0.97872 0.99303 1.22434 1.01531 0.92329 1.00247 0.94577 0.91129 0.94069 0.94263 0.92088 0.93772 0.96734 0.97373 0.92873 0.91483 0.95515 0.83399 0.90234 0.92743 0.84022 0.80449 0.87378 0.90109 0.91140 0.91051 0.91172 0.91324 0.91350 0.90287 0.90566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 7.89 37.16 0.29 -2.05 16 2 C -0.05 -0.88 0.60 -154.51 -0.09 -0.97 16 3 C -0.12 -2.16 8.06 37.16 0.30 -1.86 16 4 C 0.00 -0.08 3.11 -27.88 -0.09 -0.17 16 5 C -0.51 -13.77 8.20 -34.44 -0.28 -14.06 16 6 H 0.08 2.25 5.92 -52.48 -0.31 1.94 16 7 C 0.06 1.84 5.47 -17.82 -0.10 1.75 16 8 N -0.91 -27.52 13.96 55.43 0.77 -26.75 16 9 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 13 C 0.07 1.02 4.65 -3.82 -0.02 1.00 16 14 N -0.68 -8.84 5.70 -115.05 -0.66 -9.49 16 15 C 0.12 1.30 5.66 -4.97 -0.03 1.27 16 16 C 0.10 1.14 6.44 -82.27 -0.53 0.61 16 17 C -0.28 -3.12 10.72 -40.01 -0.43 -3.55 16 18 C 0.04 0.45 12.02 -17.37 -0.21 0.24 16 19 N -0.30 -3.81 12.03 30.63 0.37 -3.44 16 20 N -0.35 -4.20 3.20 -49.61 -0.16 -4.36 16 21 C 0.16 1.67 3.69 -66.81 -0.25 1.42 16 22 C -0.13 -1.20 6.52 -25.03 -0.16 -1.36 16 23 C -0.12 -0.94 6.91 -24.70 -0.17 -1.11 16 24 C -0.12 -1.04 6.83 -25.07 -0.17 -1.21 16 25 C -0.13 -1.32 6.54 -25.61 -0.17 -1.49 16 26 H 0.04 0.55 6.57 -51.93 -0.34 0.21 16 27 H 0.07 1.44 6.62 -51.93 -0.34 1.10 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 1.27 6.62 -51.93 -0.34 0.93 16 31 H 0.04 0.74 7.60 -51.93 -0.39 0.34 16 32 H 0.01 0.34 7.20 -51.92 -0.37 -0.04 16 33 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 36 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.35 4.58 6.76 -39.29 -0.27 4.32 16 38 H 0.08 0.84 7.31 -51.93 -0.38 0.46 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.14 1.36 8.06 -52.48 -0.42 0.94 16 41 H 0.18 1.43 8.06 -52.48 -0.42 1.01 16 42 H 0.11 1.13 6.82 -51.92 -0.35 0.77 16 43 H 0.08 0.85 7.72 -51.93 -0.40 0.44 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.08 0.94 7.83 -51.92 -0.41 0.53 16 LS Contribution 384.99 15.07 5.80 5.80 Total: -1.00 -30.15 384.99 -9.61 -39.76 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -8.97 Total: 3.24 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: -2.10 Total: -21.55 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 0.33 Total: -44.04 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.15 -9.61 -39.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449332313.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.099 kcal (2) G-P(sol) polarization free energy of solvation -30.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds