Wall clock time and date at job start Tue Mar 31 2020 08:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47101 * 2 1 4 4 N 1.46507 * 109.47103 * 119.99863 * 2 1 3 5 5 C 1.46504 * 119.99392 * 305.31497 * 4 2 1 6 6 C 1.38996 * 120.00266 * 125.31828 * 4 2 1 7 7 C 1.39142 * 119.70498 * 11.23581 * 6 4 2 8 8 C 1.38293 * 119.09605 * 179.97438 * 7 6 4 9 9 C 1.38882 * 118.50887 * 0.02562 * 8 7 6 10 10 C 1.50700 * 120.33790 * 180.02562 * 9 8 7 11 11 N 1.46901 * 109.47460 * 89.99707 * 10 9 8 12 12 C 1.46897 * 110.99640 * 180.02562 * 11 10 9 13 13 C 1.53009 * 109.46885 * 180.02562 * 12 11 10 14 14 C 1.53003 * 109.46721 * 300.00137 * 13 12 11 15 15 C 1.53004 * 109.46929 * 59.99579 * 13 12 11 16 16 C 1.50690 * 109.47089 * 179.97438 * 13 12 11 17 17 H 1.08000 * 120.00369 * 0.02562 * 16 13 12 18 18 C 1.37882 * 119.99941 * 179.97438 * 16 13 12 19 19 N 1.31512 * 120.00044 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 120.00017 * 180.02562 * 18 16 13 21 21 H 1.48502 * 109.47011 * 89.99916 * 20 18 16 22 22 H 1.48496 * 109.46729 * 210.00099 * 20 18 16 23 23 H 1.48498 * 109.47164 * 329.99979 * 20 18 16 24 24 C 1.38026 * 119.32539 * 0.02562 * 9 8 7 25 25 N 1.31969 * 120.85921 * 359.97438 * 24 9 8 26 26 H 1.09008 * 109.46884 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47123 * 300.00176 * 1 2 3 28 28 H 1.09005 * 109.46874 * 60.00298 * 1 2 3 29 29 H 1.09003 * 109.47690 * 239.99981 * 2 1 3 30 30 H 1.09001 * 109.47253 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47014 * 299.99616 * 3 2 1 32 32 H 1.09003 * 109.47326 * 59.99739 * 3 2 1 33 33 H 1.08995 * 109.47309 * 270.00001 * 5 4 2 34 34 H 1.08993 * 109.47557 * 30.00445 * 5 4 2 35 35 H 1.09000 * 109.46275 * 150.00265 * 5 4 2 36 36 H 1.08002 * 120.45284 * 359.97438 * 7 6 4 37 37 H 1.08002 * 120.74852 * 180.02562 * 8 7 6 38 38 H 1.09008 * 109.46827 * 209.99950 * 10 9 8 39 39 H 1.08999 * 109.46887 * 329.99496 * 10 9 8 40 40 H 1.00900 * 110.99748 * 303.95507 * 11 10 9 41 41 H 1.09003 * 109.47375 * 299.99491 * 12 11 10 42 42 H 1.08999 * 109.47468 * 60.00011 * 12 11 10 43 43 H 1.09001 * 109.47327 * 60.00102 * 14 13 12 44 44 H 1.08996 * 109.46815 * 180.02562 * 14 13 12 45 45 H 1.08999 * 109.47012 * 299.99653 * 14 13 12 46 46 H 1.08995 * 109.47029 * 60.00332 * 15 13 12 47 47 H 1.08996 * 109.46806 * 180.02562 * 15 13 12 48 48 H 1.08992 * 109.47377 * 300.00144 * 15 13 12 49 49 H 0.97004 * 120.00241 * 179.97438 * 19 18 16 50 50 H 1.08007 * 119.56947 * 180.02562 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.5709 -0.2614 2.5236 6 6 2.9061 -1.7529 1.0718 7 6 3.5085 -2.0077 -0.1563 8 6 4.3902 -3.0675 -0.2658 9 6 4.6407 -3.8405 0.8605 10 6 5.5946 -5.0049 0.7879 11 7 6.9532 -4.5455 1.1060 12 6 7.9124 -5.6564 1.0442 13 6 9.3128 -5.1403 1.3812 14 6 9.7153 -4.0622 0.3729 15 6 9.3115 -4.5453 2.7908 16 6 10.2967 -6.2800 1.3185 17 1 9.9573 -7.2730 1.0633 18 6 11.6305 -6.0548 1.5858 19 7 12.0439 -4.8455 1.8960 20 14 12.8502 -7.4674 1.5073 21 1 13.3994 -7.5714 0.1315 22 1 13.9576 -7.2188 2.4649 23 1 12.1633 -8.7349 1.8632 24 6 4.0070 -3.5314 2.0472 25 7 3.1701 -2.5138 2.1225 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6766 1.9564 0.8900 33 1 2.2505 0.4992 2.9078 34 1 0.5653 0.1527 2.4519 35 1 1.5642 -1.1171 3.1988 36 1 3.2906 -1.3864 -1.0123 37 1 4.8731 -3.2891 -1.2060 38 1 5.2918 -5.7679 1.5051 39 1 5.5792 -5.4249 -0.2178 40 1 7.2325 -3.7926 0.4951 41 1 7.6259 -6.4242 1.7629 42 1 7.9129 -6.0806 0.0401 43 1 9.0035 -3.2380 0.4187 44 1 10.7131 -3.6949 0.6127 45 1 9.7162 -4.4861 -0.6313 46 1 9.0247 -5.3132 3.5091 47 1 10.3090 -4.1772 3.0307 48 1 8.5998 -3.7211 2.8366 49 1 12.9822 -4.6871 2.0844 50 1 4.1992 -4.1297 2.9256 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459734072.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:52:20 Heat of formation + Delta-G solvation = 39.992472 kcal Electronic energy + Delta-G solvation = -25023.132861 eV Core-core repulsion = 21664.299331 eV Total energy + Delta-G solvation = -3358.833530 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.37210 -37.89857 -36.78532 -34.38951 -32.73255 -31.96378 -31.19711 -29.71744 -27.59679 -26.91500 -25.52987 -25.25348 -25.04683 -23.30684 -22.84231 -21.70890 -20.05079 -18.41786 -17.88884 -16.64296 -16.00738 -15.41675 -15.24058 -15.05637 -14.90045 -14.51231 -14.21980 -13.96865 -13.57524 -13.30599 -13.21176 -13.17715 -12.95732 -12.52834 -12.41198 -12.33776 -12.20175 -12.03493 -11.83590 -11.64257 -11.29363 -11.11530 -11.01297 -10.93298 -10.62641 -10.54015 -10.14490 -10.05326 -9.88352 -9.64045 -9.36924 -9.28482 -9.02315 -8.58887 -8.26047 -7.69345 -7.46210 -5.88137 -3.98512 1.38306 1.52260 2.77962 3.33010 3.40108 3.43161 3.96452 4.34311 4.46849 4.64039 4.71454 4.83216 4.85642 4.97791 5.12276 5.17764 5.19552 5.28003 5.30992 5.35332 5.37166 5.42546 5.47773 5.54374 5.61598 5.69799 5.83524 5.88050 5.94202 6.00003 6.14373 6.35577 6.42418 6.49970 6.68266 6.75911 6.91989 6.92944 7.11948 7.20710 7.35568 7.43502 7.51769 7.77316 7.79434 7.87209 8.01874 8.22949 8.25030 8.38714 8.59365 9.03139 9.66298 11.12315 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.032816 B = 0.002375 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.034183 B =11787.453652 C =11900.565702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.145 3.855 3 C -0.165 4.165 4 N -0.612 5.612 5 C 0.098 3.902 6 C 0.396 3.604 7 C -0.241 4.241 8 C -0.030 4.030 9 C -0.181 4.181 10 C 0.107 3.893 11 N -0.682 5.682 12 C 0.075 3.925 13 C 0.069 3.931 14 C -0.132 4.132 15 C -0.119 4.119 16 C -0.506 4.506 17 H 0.052 0.948 18 C 0.064 3.936 19 N -0.885 5.885 20 Si 0.888 3.112 21 H -0.283 1.283 22 H -0.287 1.287 23 H -0.276 1.276 24 C 0.167 3.833 25 N -0.542 5.542 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.043 0.957 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.075 0.925 39 H 0.028 0.972 40 H 0.337 0.663 41 H 0.057 0.943 42 H 0.013 0.987 43 H 0.010 0.990 44 H 0.083 0.917 45 H 0.018 0.982 46 H 0.018 0.982 47 H 0.073 0.927 48 H 0.020 0.980 49 H 0.258 0.742 50 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.294 10.176 -4.494 24.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.041 3.959 3 C -0.223 4.223 4 N -0.327 5.327 5 C -0.045 4.045 6 C 0.163 3.837 7 C -0.265 4.265 8 C -0.057 4.057 9 C -0.185 4.185 10 C -0.022 4.022 11 N -0.314 5.314 12 C -0.054 4.054 13 C 0.068 3.932 14 C -0.190 4.190 15 C -0.177 4.177 16 C -0.544 4.544 17 H 0.070 0.930 18 C -0.136 4.136 19 N -0.524 5.524 20 Si 0.717 3.283 21 H -0.209 1.209 22 H -0.213 1.213 23 H -0.201 1.201 24 C 0.010 3.990 25 N -0.258 5.258 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.109 0.891 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.093 0.907 39 H 0.046 0.954 40 H 0.156 0.844 41 H 0.075 0.925 42 H 0.031 0.969 43 H 0.029 0.971 44 H 0.102 0.898 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.092 0.908 48 H 0.039 0.961 49 H 0.068 0.932 50 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -22.732 10.534 -2.945 25.226 hybrid contribution 1.237 -1.056 -1.823 2.443 sum -21.495 9.478 -4.768 23.971 Atomic orbital electron populations 1.22188 0.95090 1.02499 1.02399 1.21051 0.93937 0.92999 0.87961 1.22205 1.01991 0.95868 1.02235 1.46296 1.47786 1.32476 1.06180 1.21497 0.98393 1.00595 0.84031 1.18295 0.88611 0.87152 0.89649 1.21350 1.04118 1.03050 0.97976 1.21232 0.93847 0.92330 0.98280 1.20595 1.02350 1.01045 0.94558 1.20678 0.88966 0.93519 0.99081 1.60681 1.00312 1.11840 1.58536 1.22175 0.93710 0.91777 0.97702 1.18088 0.88523 0.93698 0.92852 1.21837 1.02475 0.97233 0.97482 1.21634 1.01226 0.97649 0.97172 1.21114 0.92303 0.94406 1.46616 0.93003 1.24894 0.98199 0.95377 0.95171 1.69838 1.15273 1.19731 1.47520 0.86662 0.81097 0.82925 0.77662 1.20912 1.21323 1.20067 1.22304 0.88958 0.91150 0.96608 1.67175 1.20121 1.07740 1.30810 0.92203 0.92080 0.91403 0.89130 0.92075 0.91591 0.92278 0.93877 0.92114 0.90219 0.85484 0.85415 0.90700 0.95370 0.84405 0.92477 0.96922 0.97072 0.89849 0.96271 0.96282 0.90812 0.96093 0.93221 0.82741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 9.06 37.16 0.34 -0.67 16 2 C 0.14 1.11 3.10 -67.93 -0.21 0.90 16 3 C -0.16 -1.11 9.27 37.16 0.34 -0.77 16 4 N -0.61 -6.37 2.88 -174.08 -0.50 -6.87 16 5 C 0.10 0.91 9.82 59.85 0.59 1.50 16 6 C 0.40 5.14 7.33 -155.03 -1.14 4.00 16 7 C -0.24 -2.87 9.24 -39.23 -0.36 -3.24 16 8 C -0.03 -0.38 9.85 -39.32 -0.39 -0.77 16 9 C -0.18 -2.51 5.41 -104.46 -0.57 -3.07 16 10 C 0.11 1.59 5.83 -4.98 -0.03 1.56 16 11 N -0.68 -12.28 5.70 -115.05 -0.66 -12.94 16 12 C 0.07 1.56 4.59 -3.82 -0.02 1.54 16 13 C 0.07 1.68 0.57 -155.66 -0.09 1.59 16 14 C -0.13 -3.17 7.92 37.16 0.29 -2.87 16 15 C -0.12 -2.95 8.09 37.16 0.30 -2.65 16 16 C -0.51 -13.68 8.01 -34.44 -0.28 -13.96 16 17 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 18 C 0.06 1.76 5.15 -17.82 -0.09 1.67 16 19 N -0.88 -24.73 9.35 55.43 0.52 -24.22 16 20 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 C 0.17 2.37 10.85 -17.57 -0.19 2.18 16 25 N -0.54 -7.80 9.08 -12.44 -0.11 -7.91 16 26 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 27 H 0.06 0.36 6.51 -51.93 -0.34 0.02 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.09 0.68 5.51 -51.93 -0.29 0.39 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.39 7.81 -51.93 -0.41 -0.01 16 33 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.43 6.16 -51.93 -0.32 0.11 16 35 H 0.08 0.85 7.24 -51.93 -0.38 0.47 16 36 H 0.13 1.22 5.98 -52.49 -0.31 0.91 16 37 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 38 H 0.07 1.07 8.09 -51.92 -0.42 0.65 16 39 H 0.03 0.40 8.09 -51.93 -0.42 -0.02 16 40 H 0.34 6.13 6.76 -39.29 -0.27 5.87 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.01 0.23 6.57 -51.93 -0.34 -0.11 16 44 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.07 2.00 6.07 -51.93 -0.32 1.69 16 48 H 0.02 0.48 7.60 -51.93 -0.39 0.08 16 49 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 50 H 0.16 2.02 8.06 -52.48 -0.42 1.60 16 LS Contribution 385.89 15.07 5.82 5.82 Total: -1.00 -29.10 385.89 -10.15 -39.26 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -8.70 Total: 3.71 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -1.49 Total: -13.06 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: -0.75 Total: -51.94 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.10 -10.15 -39.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459734072.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.250 kcal (2) G-P(sol) polarization free energy of solvation -29.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds