Wall clock time and date at job start Tue Mar 31 2020 08:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47506 * 2 1 4 4 C 1.36938 * 120.00240 * 264.29312 * 3 2 1 5 5 H 1.08005 * 120.00075 * 188.63258 * 4 3 2 6 6 C 1.38809 * 119.99956 * 8.63404 * 4 3 2 7 7 N 1.31621 * 119.99825 * 24.60818 * 6 4 3 8 8 Si 1.86797 * 119.99885 * 204.60468 * 6 4 3 9 9 H 1.48494 * 109.47525 * 85.02839 * 8 6 4 10 10 H 1.48511 * 109.47032 * 205.02571 * 8 6 4 11 11 H 1.48497 * 109.47407 * 325.02267 * 8 6 4 12 12 C 1.46500 * 120.00053 * 84.28438 * 3 2 1 13 13 C 1.52994 * 109.47631 * 270.00636 * 12 3 2 14 14 C 1.52998 * 109.47430 * 179.97438 * 13 12 3 15 15 O 1.42898 * 109.47501 * 180.02562 * 14 13 12 16 16 C 1.35896 * 117.00066 * 179.97438 * 15 14 13 17 17 C 1.38727 * 120.06014 * 0.32448 * 16 15 14 18 18 C 1.38149 * 119.94734 * 180.24949 * 17 16 15 19 19 C 1.38263 * 120.05396 * 359.44685 * 18 17 16 20 20 C 1.50700 * 119.94626 * 180.27301 * 19 18 17 21 21 C 1.53008 * 109.46443 * 60.00050 * 20 19 18 22 22 C 1.52997 * 109.47225 * 179.97438 * 20 19 18 23 23 C 1.53002 * 109.47021 * 300.00506 * 20 19 18 24 24 C 1.38271 * 120.10985 * 0.25643 * 19 18 17 25 25 C 1.38136 * 120.05818 * 0.02562 * 24 19 18 26 26 H 1.08996 * 109.47185 * 300.00124 * 1 2 3 27 27 H 1.09001 * 109.47003 * 59.99754 * 1 2 3 28 28 H 1.09000 * 109.46890 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47183 * 240.00374 * 2 1 3 30 30 H 1.08994 * 109.47251 * 119.99998 * 2 1 3 31 31 H 0.97003 * 119.99666 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.47286 * 149.99945 * 12 3 2 33 33 H 1.09000 * 109.46943 * 30.00645 * 12 3 2 34 34 H 1.09006 * 109.47143 * 59.99664 * 13 12 3 35 35 H 1.08998 * 109.47321 * 299.99603 * 13 12 3 36 36 H 1.08999 * 109.47231 * 59.99466 * 14 13 12 37 37 H 1.09009 * 109.47054 * 299.99839 * 14 13 12 38 38 H 1.08007 * 120.02915 * 359.97438 * 17 16 15 39 39 H 1.07995 * 119.96960 * 179.72233 * 18 17 16 40 40 H 1.08996 * 109.47273 * 60.00476 * 21 20 19 41 41 H 1.09003 * 109.46292 * 179.97438 * 21 20 19 42 42 H 1.08998 * 109.47318 * 299.99667 * 21 20 19 43 43 H 1.09001 * 109.47086 * 60.00058 * 22 20 19 44 44 H 1.09004 * 109.46841 * 179.97438 * 22 20 19 45 45 H 1.08996 * 109.47457 * 300.00115 * 22 20 19 46 46 H 1.08996 * 109.47251 * 59.99979 * 23 20 19 47 47 H 1.09003 * 109.46551 * 179.97438 * 23 20 19 48 48 H 1.08999 * 109.46992 * 299.99143 * 23 20 19 49 49 H 1.07998 * 119.96768 * 180.02562 * 24 19 18 50 50 H 1.08003 * 120.02989 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3579 1.9874 -1.1800 5 1 2.8471 2.9502 -1.1713 6 6 2.0732 1.3645 -2.3874 7 7 1.0959 0.4859 -2.4602 8 14 3.0771 1.7732 -3.9087 9 1 4.3046 0.9379 -3.9310 10 1 2.2689 1.4977 -5.1238 11 1 3.4557 3.2088 -3.8811 12 6 2.1435 2.1139 1.2624 13 6 0.8339 2.8474 1.5584 14 6 0.9644 3.6121 2.8771 15 8 -0.2590 4.2967 3.1539 16 6 -0.3113 5.0286 4.2977 17 6 0.7944 5.0922 5.1332 18 6 0.7370 5.8328 6.2980 19 6 -0.4174 6.5196 6.6257 20 6 -0.4753 7.3316 7.8938 21 6 0.6027 8.4168 7.8541 22 6 -1.8527 7.9861 8.0180 23 6 -0.2342 6.4171 9.0965 24 6 -1.5188 6.4628 5.7916 25 6 -1.4684 5.7190 4.6287 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 0.8972 0.0503 -3.3038 32 1 2.9553 2.8370 1.1839 33 1 2.3579 1.4133 2.0694 34 1 0.0221 2.1242 1.6370 35 1 0.6195 3.5480 0.7515 36 1 1.7762 4.3352 2.7991 37 1 1.1786 2.9111 3.6840 38 1 1.6979 4.5596 4.8754 39 1 1.5960 5.8789 6.9509 40 1 0.4310 9.0683 6.9973 41 1 0.5605 9.0044 8.7711 42 1 1.5841 7.9509 7.7654 43 1 -2.6209 7.2133 8.0460 44 1 -1.8946 8.5731 8.9355 45 1 -2.0240 8.6377 7.1612 46 1 0.7472 5.9513 9.0079 47 1 -0.2757 7.0046 10.0137 48 1 -1.0022 5.6441 9.1249 49 1 -2.4192 7.0004 6.0496 50 1 -2.3288 5.6752 3.9773 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000503577781.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:25:50 Heat of formation + Delta-G solvation = -7.378473 kcal Electronic energy + Delta-G solvation = -24731.835770 eV Core-core repulsion = 21338.655331 eV Total energy + Delta-G solvation = -3393.180440 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.210 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.32927 -38.58775 -36.41537 -35.59807 -32.66016 -31.27588 -30.59901 -29.28816 -28.60316 -27.64740 -27.50501 -25.49916 -23.60935 -22.74834 -22.22465 -20.75694 -20.11717 -19.33947 -18.12208 -16.78814 -16.01567 -15.84001 -15.72850 -14.89719 -14.72509 -14.51757 -14.11230 -13.91479 -13.72118 -13.50131 -13.26236 -12.99533 -12.83960 -12.64276 -12.42329 -12.19238 -11.98298 -11.89319 -11.81394 -11.58497 -11.34930 -11.27528 -11.06212 -10.96372 -10.88495 -10.72072 -10.58991 -10.51076 -10.26606 -10.23626 -9.77590 -9.54865 -9.30287 -9.02647 -8.34222 -8.01564 -6.88780 -5.74692 -3.06254 1.31614 1.42017 3.37944 3.42384 3.48728 3.49441 3.72032 4.40141 4.50206 4.52477 4.74465 4.84948 4.91399 5.05771 5.25562 5.27657 5.30625 5.33197 5.34439 5.35992 5.42236 5.48449 5.55274 5.60370 5.62717 5.64440 5.70881 5.80040 5.88285 5.97651 5.99948 6.03802 6.04120 6.25064 6.32998 6.36818 6.42454 6.57468 6.61566 6.76626 6.79165 6.92564 6.97174 7.15703 7.22461 7.60632 7.68962 7.80257 8.13665 8.38457 9.26156 9.88716 10.33588 11.29131 Molecular weight = 305.21amu Principal moments of inertia in cm(-1) A = 0.029683 B = 0.002244 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.072886 B =12476.679973 C =12682.673854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.166 3.834 3 N -0.595 5.595 4 C -0.250 4.250 5 H 0.074 0.926 6 C -0.004 4.004 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.289 1.289 10 H -0.293 1.293 11 H -0.282 1.282 12 C 0.157 3.843 13 C -0.143 4.143 14 C 0.062 3.938 15 O -0.314 6.314 16 C 0.135 3.865 17 C -0.209 4.209 18 C -0.075 4.075 19 C -0.119 4.119 20 C -0.024 4.024 21 C -0.138 4.138 22 C -0.144 4.144 23 C -0.138 4.138 24 C -0.083 4.083 25 C -0.156 4.156 26 H 0.014 0.986 27 H 0.090 0.910 28 H 0.018 0.982 29 H 0.088 0.912 30 H 0.002 0.998 31 H 0.252 0.748 32 H 0.046 0.954 33 H 0.039 0.961 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.128 0.872 39 H 0.120 0.880 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.058 0.942 46 H 0.056 0.944 47 H 0.055 0.945 48 H 0.056 0.944 49 H 0.129 0.871 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.286 12.036 21.750 25.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.041 3.959 3 N -0.316 5.316 4 C -0.378 4.378 5 H 0.092 0.908 6 C -0.201 4.201 7 N -0.542 5.542 8 Si 0.728 3.272 9 H -0.216 1.216 10 H -0.220 1.220 11 H -0.208 1.208 12 C 0.029 3.971 13 C -0.183 4.183 14 C -0.013 4.013 15 O -0.227 6.227 16 C 0.089 3.911 17 C -0.228 4.228 18 C -0.093 4.093 19 C -0.119 4.119 20 C -0.024 4.024 21 C -0.196 4.196 22 C -0.201 4.201 23 C -0.195 4.195 24 C -0.101 4.101 25 C -0.175 4.175 26 H 0.033 0.967 27 H 0.109 0.891 28 H 0.037 0.963 29 H 0.106 0.894 30 H 0.020 0.980 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.146 0.854 39 H 0.138 0.862 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.075 0.925 49 H 0.147 0.853 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.456 11.891 21.423 24.744 hybrid contribution 0.533 0.156 -0.798 0.973 sum -2.922 12.046 20.625 24.063 Atomic orbital electron populations 1.22424 0.99284 0.98182 1.01208 1.20822 0.92524 0.84390 0.98170 1.44280 1.75601 1.10187 1.01544 1.19286 1.31305 1.03688 0.83561 0.90847 1.24737 0.97945 1.00076 0.97344 1.70164 1.27235 1.31902 1.24893 0.86358 0.80276 0.77825 0.82742 1.21629 1.21980 1.20781 1.20659 0.93414 0.94060 0.88953 1.22598 1.02804 0.99526 0.93392 1.23044 0.84339 0.94596 0.99338 1.86163 1.38798 1.60516 1.37234 1.19162 0.94100 0.91583 0.86279 1.21293 0.98907 1.05347 0.97204 1.20715 0.97357 0.95553 0.95678 1.19625 0.94378 1.00897 0.97031 1.19402 0.96104 0.94438 0.92459 1.21897 0.98061 0.97924 1.01677 1.21961 0.95955 1.00470 1.01732 1.21894 1.01913 0.99158 0.96579 1.20941 0.98249 0.97722 0.93137 1.20476 0.97278 1.00755 0.98968 0.96695 0.89131 0.96274 0.89429 0.97958 0.93814 0.93596 0.94276 0.91168 0.91040 0.92506 0.92648 0.85421 0.86230 0.92496 0.92576 0.92514 0.92265 0.92536 0.92249 0.92521 0.92577 0.92502 0.85312 0.85383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.58 37.16 0.36 -3.19 16 2 C 0.17 4.02 5.64 -4.04 -0.02 4.00 16 3 N -0.60 -14.64 2.54 -173.24 -0.44 -15.08 16 4 C -0.25 -6.71 9.70 -15.06 -0.15 -6.86 16 5 H 0.07 1.94 7.93 -52.48 -0.42 1.53 16 6 C 0.00 -0.11 4.91 -17.43 -0.09 -0.19 16 7 N -0.90 -25.09 8.54 55.49 0.47 -24.62 16 8 Si 0.90 21.60 29.62 -169.99 -5.03 16.57 16 9 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 10 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 C 0.16 3.14 5.71 -4.04 -0.02 3.12 16 13 C -0.14 -2.68 5.79 -26.73 -0.15 -2.84 16 14 C 0.06 0.96 4.74 37.16 0.18 1.14 16 15 O -0.31 -5.20 10.14 -19.41 -0.20 -5.39 16 16 C 0.13 1.95 6.69 -39.21 -0.26 1.68 16 17 C -0.21 -2.63 9.04 -39.43 -0.36 -2.99 16 18 C -0.07 -0.81 8.70 -39.60 -0.34 -1.16 16 19 C -0.12 -1.22 4.76 -104.60 -0.50 -1.72 16 20 C -0.02 -0.19 0.85 -155.66 -0.13 -0.32 16 21 C -0.14 -1.01 8.29 37.16 0.31 -0.70 16 22 C -0.14 -0.98 7.13 37.16 0.26 -0.72 16 23 C -0.14 -1.00 8.29 37.16 0.31 -0.69 16 24 C -0.08 -0.89 8.97 -39.61 -0.36 -1.24 16 25 C -0.16 -2.00 9.99 -39.43 -0.39 -2.40 16 26 H 0.01 0.32 5.98 -51.93 -0.31 0.00 16 27 H 0.09 2.41 6.28 -51.93 -0.33 2.09 16 28 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.09 2.35 5.87 -51.93 -0.31 2.05 16 30 H 0.00 0.05 7.97 -51.93 -0.41 -0.37 16 31 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 32 H 0.05 0.88 8.03 -51.93 -0.42 0.46 16 33 H 0.04 0.71 7.95 -51.93 -0.41 0.30 16 34 H 0.07 1.41 5.93 -51.93 -0.31 1.11 16 35 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.06 0.81 7.65 -51.93 -0.40 0.41 16 37 H 0.06 0.77 7.68 -51.92 -0.40 0.37 16 38 H 0.13 1.48 6.30 -52.48 -0.33 1.15 16 39 H 0.12 1.07 7.09 -52.49 -0.37 0.70 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.06 0.41 7.38 -51.93 -0.38 0.03 16 43 H 0.06 0.40 7.51 -51.93 -0.39 0.01 16 44 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.06 0.40 7.51 -51.93 -0.39 0.01 16 46 H 0.06 0.41 7.38 -51.93 -0.38 0.02 16 47 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.13 1.10 5.88 -52.49 -0.31 0.80 16 50 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 LS Contribution 384.63 15.07 5.80 5.80 Total: -1.00 -28.71 384.63 -9.54 -38.26 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -8.78 Total: -0.45 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -1.36 Total: -15.08 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.03 Total: -39.70 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -0.20 Total: -5.39 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -28.71 -9.54 -38.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000503577781.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.880 kcal (2) G-P(sol) polarization free energy of solvation -28.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds