Wall clock time and date at job start Tue Mar 31 2020 08:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47428 * 2 1 4 4 C 1.36940 * 119.99676 * 275.30807 * 3 2 1 5 5 H 1.08000 * 119.99647 * 37.58029 * 4 3 2 6 6 C 1.38810 * 119.99672 * 217.57563 * 4 3 2 7 7 N 1.31619 * 120.00335 * 21.43413 * 6 4 3 8 8 Si 1.86806 * 119.99644 * 201.43236 * 6 4 3 9 9 H 1.48499 * 109.47068 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46995 * 120.00074 * 8 6 4 11 11 H 1.48494 * 109.47360 * 240.00085 * 8 6 4 12 12 C 1.46496 * 120.00268 * 95.30822 * 3 2 1 13 13 C 1.52999 * 109.47294 * 270.00172 * 12 3 2 14 14 C 1.53002 * 109.46996 * 179.97438 * 13 12 3 15 15 O 1.42900 * 109.46881 * 180.02562 * 14 13 12 16 16 C 1.35900 * 117.00042 * 180.02562 * 15 14 13 17 17 C 1.38752 * 120.05647 * 0.02629 * 16 15 14 18 18 C 1.38120 * 119.94479 * 179.97438 * 17 16 15 19 19 C 1.38280 * 120.05717 * 0.02562 * 18 17 16 20 20 C 1.38243 * 120.11322 * 359.97438 * 19 18 17 21 21 C 1.50700 * 119.97772 * 180.02562 * 20 19 18 22 22 C 1.53005 * 109.46939 * 0.02562 * 21 20 19 23 23 C 1.52995 * 109.47176 * 119.99978 * 21 20 19 24 24 C 1.53004 * 109.47332 * 240.00488 * 21 20 19 25 25 C 1.38167 * 120.05647 * 359.97438 * 20 19 18 26 26 H 1.08995 * 109.47337 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46581 * 300.00453 * 1 2 3 28 28 H 1.08996 * 109.47304 * 59.99897 * 1 2 3 29 29 H 1.09001 * 109.47097 * 239.99468 * 2 1 3 30 30 H 1.09006 * 109.46816 * 120.00086 * 2 1 3 31 31 H 0.96997 * 119.99911 * 179.97438 * 7 6 4 32 32 H 1.09004 * 109.47192 * 149.99836 * 12 3 2 33 33 H 1.09010 * 109.47065 * 30.00274 * 12 3 2 34 34 H 1.08997 * 109.47116 * 60.00112 * 13 12 3 35 35 H 1.08996 * 109.46973 * 299.99916 * 13 12 3 36 36 H 1.08997 * 109.46887 * 60.00228 * 14 13 12 37 37 H 1.08996 * 109.47401 * 299.99911 * 14 13 12 38 38 H 1.07999 * 120.02411 * 359.97438 * 17 16 15 39 39 H 1.08000 * 119.96989 * 180.02562 * 18 17 16 40 40 H 1.08000 * 119.94377 * 180.28130 * 19 18 17 41 41 H 1.08995 * 109.46973 * 59.99606 * 22 21 20 42 42 H 1.08993 * 109.47221 * 180.02562 * 22 21 20 43 43 H 1.09000 * 109.46914 * 299.99964 * 22 21 20 44 44 H 1.09000 * 109.47035 * 60.00456 * 23 21 20 45 45 H 1.09005 * 109.46990 * 179.97438 * 23 21 20 46 46 H 1.09002 * 109.47502 * 300.00515 * 23 21 20 47 47 H 1.09005 * 109.46806 * 59.99670 * 24 21 20 48 48 H 1.09004 * 109.46746 * 179.97438 * 24 21 20 49 49 H 1.09000 * 109.47016 * 299.99629 * 24 21 20 50 50 H 1.07999 * 120.03264 * 179.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1432 2.0632 -1.1809 5 1 1.4106 1.9277 -1.9627 6 6 3.2113 2.9288 -1.3729 7 7 4.3028 2.7979 -0.6491 8 14 3.0994 4.2794 -2.6585 9 1 1.7772 4.2140 -3.3314 10 1 3.2551 5.6022 -2.0016 11 1 4.1767 4.0962 -3.6640 12 6 2.3732 2.0327 1.2632 13 6 1.1427 2.7383 1.8365 14 6 1.5132 3.4182 3.1561 15 8 0.3637 4.0767 3.6918 16 6 0.5229 4.7349 4.8701 17 6 1.7604 4.7472 5.4976 18 6 1.9197 5.4173 6.6948 19 6 0.8471 6.0752 7.2683 20 6 -0.3868 6.0645 6.6452 21 6 -1.5535 6.7830 7.2727 22 6 -1.1058 7.4363 8.5818 23 6 -2.0642 7.8606 6.3141 24 6 -2.6748 5.7821 7.5590 25 6 -0.5512 5.3966 5.4469 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 5.0492 3.4025 -0.7836 32 1 3.1618 2.7641 1.0859 33 1 2.7256 1.2833 1.9721 34 1 0.3542 2.0069 2.0139 35 1 0.7904 3.4876 1.1276 36 1 2.3018 4.1495 2.9791 37 1 1.8652 2.6686 3.8648 38 1 2.5982 4.2332 5.0502 39 1 2.8828 5.4275 7.1833 40 1 0.9749 6.6025 8.2022 41 1 -0.3072 8.1493 8.3775 42 1 -1.9497 7.9555 9.0359 43 1 -0.7417 6.6688 9.2649 44 1 -2.3830 7.3956 5.3813 45 1 -2.9084 8.3800 6.7678 46 1 -1.2654 8.5737 6.1101 47 1 -2.3108 5.0144 8.2419 48 1 -3.5184 6.3018 8.0132 49 1 -2.9936 5.3171 6.6261 50 1 -1.5155 5.3881 4.9607 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000511590808.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:25:53 Heat of formation + Delta-G solvation = -19.877034 kcal Electronic energy + Delta-G solvation = -25015.053873 eV Core-core repulsion = 21621.331455 eV Total energy + Delta-G solvation = -3393.722418 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.210 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.27096 -38.44527 -36.30032 -35.66361 -32.18966 -31.84550 -30.49059 -29.52894 -28.57260 -27.43715 -27.38620 -25.49650 -23.90401 -22.80565 -22.01624 -20.87260 -20.09160 -19.34827 -17.51862 -16.69472 -16.00173 -15.79674 -15.66974 -14.98014 -14.86095 -14.45296 -14.25106 -13.91675 -13.74158 -13.57757 -13.12173 -13.06538 -12.68158 -12.43889 -12.41779 -12.32681 -11.92847 -11.89429 -11.76640 -11.65951 -11.45960 -11.17698 -11.09572 -11.03043 -10.88318 -10.76457 -10.62747 -10.50732 -10.38887 -10.30720 -10.01728 -9.67244 -9.50347 -8.77558 -8.48316 -8.04754 -6.57738 -5.79933 -3.38548 1.35342 1.53560 3.34156 3.43741 3.46300 3.47831 3.79601 4.42258 4.48002 4.60363 4.78886 4.91926 5.07343 5.15246 5.27804 5.30071 5.34141 5.40953 5.41832 5.45349 5.49088 5.55007 5.58182 5.65279 5.67703 5.72383 5.81761 5.90511 5.94506 6.03972 6.05643 6.08933 6.10111 6.32063 6.32798 6.40737 6.43448 6.50193 6.54715 6.62106 6.64841 6.77268 6.88219 6.93162 7.12758 7.19574 7.62729 7.69307 7.82545 8.51693 9.18665 9.80958 10.39612 11.19758 Molecular weight = 305.21amu Principal moments of inertia in cm(-1) A = 0.017423 B = 0.002811 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.647596 B = 9959.654024 C =10376.559802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.141 3.859 3 N -0.583 5.583 4 C -0.257 4.257 5 H 0.060 0.940 6 C 0.012 3.988 7 N -0.888 5.888 8 Si 0.895 3.105 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.289 1.289 12 C 0.152 3.848 13 C -0.134 4.134 14 C 0.063 3.937 15 O -0.316 6.316 16 C 0.142 3.858 17 C -0.215 4.215 18 C -0.078 4.078 19 C -0.169 4.169 20 C -0.036 4.036 21 C -0.029 4.029 22 C -0.142 4.142 23 C -0.140 4.140 24 C -0.139 4.139 25 C -0.155 4.155 26 H 0.035 0.965 27 H 0.044 0.956 28 H 0.049 0.951 29 H 0.044 0.956 30 H 0.033 0.967 31 H 0.254 0.746 32 H 0.095 0.905 33 H 0.024 0.976 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.129 0.871 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.059 0.941 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.057 0.943 46 H 0.057 0.943 47 H 0.056 0.944 48 H 0.057 0.943 49 H 0.059 0.941 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.202 6.713 18.139 21.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.014 3.986 3 N -0.304 5.304 4 C -0.387 4.387 5 H 0.078 0.922 6 C -0.188 4.188 7 N -0.531 5.531 8 Si 0.724 3.276 9 H -0.200 1.200 10 H -0.214 1.214 11 H -0.216 1.216 12 C 0.025 3.975 13 C -0.174 4.174 14 C -0.012 4.012 15 O -0.229 6.229 16 C 0.096 3.904 17 C -0.234 4.234 18 C -0.096 4.096 19 C -0.187 4.187 20 C -0.036 4.036 21 C -0.029 4.029 22 C -0.199 4.199 23 C -0.197 4.197 24 C -0.196 4.196 25 C -0.174 4.174 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.112 0.888 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.147 0.853 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.075 0.925 48 H 0.076 0.924 49 H 0.078 0.922 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.194 6.744 17.973 21.284 hybrid contribution 0.282 0.709 -0.613 0.979 sum -8.912 7.453 17.360 20.888 Atomic orbital electron populations 1.22378 1.00058 0.98943 1.01302 1.20856 0.91737 0.87221 0.98743 1.43722 1.75991 1.08264 1.02384 1.19038 1.04601 1.21058 0.94019 0.92212 1.25184 0.94206 1.01316 0.98133 1.70008 1.03203 1.37319 1.42528 0.86358 0.77730 0.82274 0.81242 1.20011 1.21391 1.21613 1.20782 0.94272 0.96562 0.85921 1.22402 1.02452 0.99857 0.92693 1.23012 0.86596 0.95254 0.96333 1.86127 1.38595 1.64504 1.33674 1.19097 0.93567 0.91861 0.85919 1.21353 0.97208 1.06165 0.98626 1.20914 0.98558 0.95639 0.94529 1.20989 0.92660 1.03587 1.01455 1.19529 0.94437 0.96074 0.93562 1.19497 0.93143 0.95001 0.95249 1.21951 1.01301 1.00496 0.96192 1.21901 1.00837 0.97937 0.99001 1.21897 0.97145 0.98532 1.02037 1.20203 0.98169 1.02070 0.96916 0.94577 0.93674 0.93207 0.93780 0.94828 0.93614 0.88754 0.95715 0.92607 0.91294 0.92141 0.92671 0.85339 0.86089 0.85858 0.92222 0.92465 0.92243 0.92169 0.92398 0.92432 0.92474 0.92402 0.92184 0.85587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.11 10.21 37.16 0.38 -2.73 16 2 C 0.14 3.00 6.44 -4.04 -0.03 2.97 16 3 N -0.58 -14.43 2.43 -173.23 -0.42 -14.85 16 4 C -0.26 -6.99 9.45 -15.06 -0.14 -7.13 16 5 H 0.06 1.64 7.92 -52.49 -0.42 1.22 16 6 C 0.01 0.32 4.95 -17.43 -0.09 0.23 16 7 N -0.89 -25.22 11.47 55.49 0.64 -24.59 16 8 Si 0.89 21.51 29.60 -169.99 -5.03 16.48 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 C 0.15 3.47 5.33 -4.04 -0.02 3.44 16 13 C -0.13 -2.68 5.91 -26.73 -0.16 -2.84 16 14 C 0.06 1.10 4.74 37.16 0.18 1.27 16 15 O -0.32 -5.53 10.14 -19.43 -0.20 -5.73 16 16 C 0.14 2.20 6.69 -39.21 -0.26 1.94 16 17 C -0.21 -3.02 9.04 -39.43 -0.36 -3.38 16 18 C -0.08 -0.94 10.04 -39.61 -0.40 -1.34 16 19 C -0.17 -1.89 8.97 -39.56 -0.36 -2.25 16 20 C -0.04 -0.42 4.76 -104.65 -0.50 -0.91 16 21 C -0.03 -0.26 0.85 -155.66 -0.13 -0.39 16 22 C -0.14 -1.07 7.13 37.16 0.27 -0.80 16 23 C -0.14 -1.22 8.28 37.16 0.31 -0.91 16 24 C -0.14 -1.18 8.29 37.16 0.31 -0.87 16 25 C -0.15 -2.12 8.65 -39.43 -0.34 -2.46 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.04 0.83 6.64 -51.93 -0.34 0.48 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.04 0.96 8.08 -51.93 -0.42 0.54 16 30 H 0.03 0.67 7.83 -51.93 -0.41 0.26 16 31 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.09 2.43 5.52 -51.93 -0.29 2.14 16 33 H 0.02 0.53 7.86 -51.92 -0.41 0.12 16 34 H 0.06 1.09 6.64 -51.93 -0.34 0.75 16 35 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 36 H 0.06 1.05 7.66 -51.93 -0.40 0.65 16 37 H 0.06 0.87 7.66 -51.93 -0.40 0.47 16 38 H 0.13 1.74 6.30 -52.49 -0.33 1.41 16 39 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 40 H 0.12 1.11 5.89 -52.49 -0.31 0.81 16 41 H 0.06 0.44 7.51 -51.93 -0.39 0.05 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 0.43 7.51 -51.93 -0.39 0.04 16 44 H 0.06 0.56 7.39 -51.93 -0.38 0.17 16 45 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 49 H 0.06 0.54 7.39 -51.93 -0.38 0.15 16 50 H 0.13 1.64 7.10 -52.49 -0.37 1.26 16 LS Contribution 391.11 15.07 5.89 5.89 Total: -1.00 -29.03 391.11 -9.38 -38.41 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -8.92 Total: 0.52 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -1.34 Total: -16.15 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.21 Total: -39.44 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -0.20 Total: -5.73 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.03 -9.38 -38.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000511590808.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.537 kcal (2) G-P(sol) polarization free energy of solvation -29.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds