Wall clock time and date at job start Tue Mar 31 2020 08:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34940 * 126.03770 * 2 1 4 4 C 1.35313 * 107.74821 * 179.75168 * 3 2 1 5 5 C 1.50706 * 126.04200 * 180.27649 * 4 3 2 6 6 N 1.46897 * 109.47063 * 261.91919 * 5 4 3 7 7 C 1.46850 * 111.00392 * 45.78831 * 6 5 4 8 8 C 1.53033 * 109.52550 * 185.84037 * 7 6 5 9 9 C 1.53121 * 109.27747 * 300.82329 * 8 7 6 10 10 C 1.50700 * 109.57478 * 177.59393 * 9 8 7 11 11 H 1.07998 * 120.00016 * 245.70170 * 10 9 8 12 12 C 1.37880 * 120.00389 * 65.69899 * 10 9 8 13 13 N 1.31521 * 119.99609 * 9.32209 * 12 10 9 14 14 Si 1.86797 * 120.00226 * 189.32690 * 12 10 9 15 15 H 1.48493 * 109.47425 * 94.98674 * 14 12 10 16 16 H 1.48503 * 109.47033 * 214.98839 * 14 12 10 17 17 H 1.48501 * 109.47054 * 334.98538 * 14 12 10 18 18 C 1.53115 * 109.16166 * 57.65439 * 9 8 7 19 19 C 1.46844 * 111.00174 * 170.00062 * 6 5 4 20 20 C 1.39872 * 107.91965 * 0.40078 * 4 3 2 21 21 C 1.50691 * 125.89961 * 179.86655 * 20 4 3 22 22 C 1.53002 * 109.47396 * 184.68103 * 21 20 4 23 23 C 1.53001 * 109.47544 * 64.68168 * 21 20 4 24 24 C 1.52999 * 109.47017 * 304.68181 * 21 20 4 25 25 N 1.30831 * 108.19862 * 359.59591 * 20 4 3 26 26 H 1.08995 * 109.47240 * 270.01792 * 1 2 3 27 27 H 1.08997 * 109.47236 * 30.02496 * 1 2 3 28 28 H 1.09000 * 109.47022 * 150.02340 * 1 2 3 29 29 H 1.08008 * 126.12653 * 0.02562 * 3 2 1 30 30 H 1.09002 * 109.46978 * 21.91742 * 5 4 3 31 31 H 1.08998 * 109.47279 * 141.91678 * 5 4 3 32 32 H 1.09000 * 109.46001 * 305.85958 * 7 6 5 33 33 H 1.08997 * 109.45538 * 65.82156 * 7 6 5 34 34 H 1.08996 * 109.50618 * 180.87878 * 8 7 6 35 35 H 1.09003 * 109.53763 * 60.77777 * 8 7 6 36 36 H 1.09000 * 109.52300 * 297.74785 * 9 8 7 37 37 H 0.97000 * 119.99442 * 179.97438 * 13 12 10 38 38 H 1.09006 * 109.50245 * 182.40612 * 18 9 8 39 39 H 1.08995 * 109.53353 * 62.30892 * 18 9 8 40 40 H 1.09001 * 109.46320 * 294.17622 * 19 6 5 41 41 H 1.09007 * 109.46286 * 54.15533 * 19 6 5 42 42 H 1.09002 * 109.46758 * 299.99924 * 22 21 20 43 43 H 1.08997 * 109.47473 * 180.02562 * 22 21 20 44 44 H 1.08998 * 109.46517 * 59.99646 * 22 21 20 45 45 H 1.09001 * 109.47692 * 173.33321 * 23 21 20 46 46 H 1.09004 * 109.46775 * 293.33667 * 23 21 20 47 47 H 1.08995 * 109.47531 * 53.33123 * 23 21 20 48 48 H 1.09003 * 109.46894 * 299.99787 * 24 21 20 49 49 H 1.08996 * 109.47657 * 60.00478 * 24 21 20 50 50 H 1.09011 * 109.47071 * 180.02562 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 0.0056 5 6 4.7680 1.5453 0.0135 6 7 5.2862 1.6754 -1.3549 7 6 4.2007 1.9514 -2.3047 8 6 4.7535 1.9361 -3.7316 9 6 5.8511 2.9960 -3.8600 10 6 6.4411 2.9466 -5.2458 11 1 7.4701 2.6495 -5.3844 12 6 5.6672 3.2808 -6.3369 13 7 4.4787 3.8159 -6.1610 14 14 6.3066 2.9733 -8.0649 15 1 5.8023 1.6651 -8.5539 16 1 5.8344 4.0544 -8.9670 17 1 7.7914 2.9564 -8.0476 18 6 6.9458 2.7134 -2.8274 19 6 6.3295 2.7063 -1.4267 20 6 3.5347 -0.7321 -0.0002 21 6 4.7496 -1.6236 0.0002 22 6 4.3108 -3.0840 -0.1250 23 6 5.5214 -1.4334 1.3076 24 6 5.6503 -1.2586 -1.1814 25 7 2.2892 -1.1327 -0.0002 26 1 -0.3633 0.0003 1.0276 27 1 -0.3633 0.8897 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 1.9281 2.1193 0.0004 30 1 4.5053 2.5309 0.3978 31 1 5.5316 1.0988 0.6503 32 1 3.4289 1.1881 -2.2059 33 1 3.7722 2.9307 -2.0917 34 1 3.9508 2.1563 -4.4353 35 1 5.1699 0.9528 -3.9507 36 1 5.4266 3.9836 -3.6798 37 1 3.9344 4.0513 -6.9286 38 1 7.7094 3.4892 -2.8850 39 1 7.3974 1.7426 -3.0314 40 1 5.8909 3.6821 -1.2179 41 1 7.1040 2.4911 -0.6904 42 1 3.6691 -3.3439 0.7170 43 1 5.1896 -3.7288 -0.1242 44 1 3.7610 -3.2195 -1.0563 45 1 6.3316 -2.1607 1.3604 46 1 5.9351 -0.4255 1.3418 47 1 4.8475 -1.5783 2.1518 48 1 5.1005 -1.3942 -2.1128 49 1 5.9631 -0.2183 -1.0923 50 1 6.5290 -1.9038 -1.1814 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543780547.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:42:10 Heat of formation + Delta-G solvation = 67.783043 kcal Electronic energy + Delta-G solvation = -26933.722062 eV Core-core repulsion = 23576.093621 eV Total energy + Delta-G solvation = -3357.628441 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.36125 -38.13132 -36.68091 -34.11881 -32.54810 -31.64032 -29.97974 -29.60883 -27.44253 -26.99537 -26.73348 -25.75291 -23.93659 -22.08532 -21.71695 -21.15515 -20.09825 -18.69656 -18.08782 -16.43276 -16.29507 -15.62032 -15.00287 -14.88597 -14.38328 -14.31167 -14.17445 -13.90394 -13.53031 -13.04144 -12.99853 -12.84235 -12.66243 -12.51265 -12.21745 -12.03448 -11.92480 -11.75499 -11.59365 -11.31793 -11.28487 -10.95915 -10.84159 -10.73272 -10.68432 -10.65631 -10.37749 -10.16298 -10.00200 -9.98024 -9.36519 -9.05888 -8.84241 -8.66471 -8.24040 -8.19703 -7.54249 -5.95566 -3.95701 2.01124 2.60098 2.91283 3.34561 3.41752 3.44951 4.45780 4.50057 4.67418 4.81416 4.93625 5.04865 5.10335 5.22501 5.29426 5.36542 5.38611 5.42419 5.57670 5.70931 5.77518 5.81519 5.92944 5.95517 5.98344 6.03387 6.14348 6.14745 6.24977 6.29823 6.31593 6.37770 6.41092 6.46240 6.61947 6.67263 6.71881 6.86004 6.90471 7.10876 7.12238 7.14425 7.22073 7.46283 7.68171 7.78139 7.89850 7.90987 8.09934 8.12259 8.54121 9.08499 9.67154 11.13622 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.015978 B = 0.004161 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.939739 B = 6726.897329 C = 7173.242851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.382 5.382 3 C 0.056 3.944 4 C -0.218 4.218 5 C 0.126 3.874 6 N -0.523 5.523 7 C 0.062 3.938 8 C -0.097 4.097 9 C 0.047 3.953 10 C -0.510 4.510 11 H 0.054 0.946 12 C 0.063 3.937 13 N -0.891 5.891 14 Si 0.884 3.116 15 H -0.282 1.282 16 H -0.289 1.289 17 H -0.274 1.274 18 C -0.105 4.105 19 C 0.058 3.942 20 C 0.111 3.889 21 C 0.016 3.984 22 C -0.134 4.134 23 C -0.137 4.137 24 C -0.155 4.155 25 N -0.300 5.300 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.167 0.833 30 H 0.030 0.970 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.017 0.983 34 H 0.069 0.931 35 H 0.044 0.956 36 H 0.026 0.974 37 H 0.258 0.742 38 H 0.049 0.951 39 H 0.056 0.944 40 H 0.024 0.976 41 H 0.058 0.942 42 H 0.052 0.948 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.060 0.940 46 H 0.063 0.937 47 H 0.049 0.951 48 H 0.050 0.950 49 H 0.110 0.890 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.526 -7.473 16.039 18.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.164 5.164 3 C -0.090 4.090 4 C -0.229 4.229 5 C -0.002 4.002 6 N -0.248 5.248 7 C -0.065 4.065 8 C -0.136 4.136 9 C 0.029 3.971 10 C -0.548 4.548 11 H 0.072 0.928 12 C -0.138 4.138 13 N -0.530 5.530 14 Si 0.712 3.288 15 H -0.208 1.208 16 H -0.215 1.215 17 H -0.199 1.199 18 C -0.143 4.143 19 C -0.070 4.070 20 C -0.056 4.056 21 C 0.014 3.986 22 C -0.192 4.192 23 C -0.194 4.194 24 C -0.213 4.213 25 N -0.121 5.121 26 H 0.088 0.912 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.184 0.816 30 H 0.048 0.952 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.036 0.964 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.044 0.956 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.042 0.958 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.068 0.932 48 H 0.070 0.930 49 H 0.128 0.872 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.461 -8.824 15.801 18.904 hybrid contribution 0.012 1.419 -0.878 1.669 sum -5.449 -7.405 14.923 17.528 Atomic orbital electron populations 1.21762 0.74638 1.04347 1.02796 1.48277 1.06235 1.03877 1.57988 1.22290 0.90948 0.93201 1.02607 1.19759 0.93936 0.93660 1.15573 1.20467 0.92718 0.95565 0.91492 1.62105 1.12532 1.46123 1.03996 1.22198 0.92505 0.97517 0.94291 1.21567 1.00416 0.99721 0.91860 1.18685 0.91179 0.94567 0.92716 1.21202 0.97575 1.44807 0.91256 0.92777 1.24950 0.95177 0.94823 0.98845 1.69974 1.11040 1.41834 1.30133 0.86710 0.79179 0.77854 0.85050 1.20796 1.21474 1.19911 1.21656 0.99056 1.00590 0.92962 1.22153 0.93736 0.91919 0.99190 1.22066 0.92694 0.93079 0.97780 1.18982 0.89900 0.92610 0.97136 1.21786 1.00654 0.94684 1.02060 1.21896 0.99496 1.02316 0.95741 1.22252 0.97582 1.05703 0.95742 1.77272 1.01201 1.07624 1.26035 0.91238 0.89683 0.89552 0.81557 0.95222 0.90277 0.92359 0.96430 0.91197 0.93714 0.95601 0.93256 0.93235 0.92528 0.95810 0.92388 0.92884 0.92717 0.92561 0.92143 0.91785 0.93187 0.93045 0.87170 0.93429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.93 11.47 59.85 0.69 1.61 16 2 N -0.38 -5.09 4.01 -68.16 -0.27 -5.36 16 3 C 0.06 0.75 10.41 -17.23 -0.18 0.57 16 4 C -0.22 -3.17 3.73 -105.05 -0.39 -3.56 16 5 C 0.13 1.79 4.60 -4.97 -0.02 1.77 16 6 N -0.52 -8.80 2.45 -236.11 -0.58 -9.38 16 7 C 0.06 1.21 4.90 -3.83 -0.02 1.19 16 8 C -0.10 -2.28 5.19 -26.65 -0.14 -2.42 16 9 C 0.05 1.16 2.03 -91.65 -0.19 0.98 16 10 C -0.51 -14.06 8.49 -34.44 -0.29 -14.35 16 11 H 0.05 1.48 7.77 -52.49 -0.41 1.08 16 12 C 0.06 1.76 5.23 -17.82 -0.09 1.67 16 13 N -0.89 -25.79 12.19 55.43 0.68 -25.11 16 14 Si 0.88 21.53 29.55 -169.99 -5.02 16.51 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 17 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 18 C -0.10 -2.15 5.32 -26.65 -0.14 -2.29 16 19 C 0.06 0.99 5.42 -3.84 -0.02 0.97 16 20 C 0.11 1.66 5.61 -82.41 -0.46 1.20 16 21 C 0.02 0.21 0.81 -155.66 -0.13 0.09 16 22 C -0.13 -1.68 7.96 37.16 0.30 -1.39 16 23 C -0.14 -1.54 8.33 37.16 0.31 -1.23 16 24 C -0.15 -2.26 8.22 37.16 0.31 -1.96 16 25 N -0.30 -4.65 11.87 33.67 0.40 -4.25 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.17 1.83 8.06 -52.48 -0.42 1.41 16 30 H 0.03 0.41 8.08 -51.93 -0.42 -0.01 16 31 H 0.08 1.03 5.44 -51.93 -0.28 0.75 16 32 H 0.06 1.13 5.96 -51.93 -0.31 0.83 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 1.84 6.99 -51.93 -0.36 1.48 16 35 H 0.04 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.03 0.71 8.09 -51.93 -0.42 0.29 16 37 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.86 8.12 -51.92 -0.42 0.44 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.71 5.63 -51.93 -0.29 0.42 16 47 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.11 1.73 4.20 -51.93 -0.22 1.51 16 50 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 LS Contribution 377.87 15.07 5.69 5.69 Total: -1.00 -30.57 377.87 -8.61 -39.19 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -9.03 Total: -0.13 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -0.48 Total: -17.16 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: 0.22 Total: -44.10 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.57 -8.61 -39.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543780547.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.971 kcal (2) G-P(sol) polarization free energy of solvation -30.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds