Wall clock time and date at job start Tue Mar 31 2020 08:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38118 * 120.40131 * 2 1 4 4 C 1.39622 * 118.33273 * 179.97438 * 3 2 1 5 5 N 1.38538 * 120.53315 * 179.97438 * 4 3 2 6 6 C 1.46500 * 119.99795 * 4.99197 * 5 4 3 7 7 C 1.50701 * 109.47359 * 84.22639 * 6 5 4 8 8 H 1.08004 * 119.99228 * 354.87079 * 7 6 5 9 9 C 1.37869 * 120.00138 * 175.14769 * 7 6 5 10 10 N 1.31510 * 120.00206 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00059 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46925 * 90.00235 * 11 9 7 13 13 H 1.48495 * 109.47280 * 210.00496 * 11 9 7 14 14 H 1.48499 * 109.47149 * 330.00526 * 11 9 7 15 15 C 1.46504 * 120.00293 * 184.99744 * 5 4 3 16 16 C 1.52997 * 109.47272 * 89.06530 * 15 5 4 17 17 C 1.53006 * 109.46940 * 56.86788 * 16 15 5 18 18 C 1.53001 * 109.47182 * 176.86503 * 16 15 5 19 19 C 1.53001 * 109.47225 * 296.87033 * 16 15 5 20 20 N 1.32999 * 118.93989 * 0.24255 * 4 3 2 21 21 C 1.31754 * 120.67953 * 359.49759 * 20 4 3 22 22 C 1.50700 * 119.07821 * 180.25816 * 21 20 4 23 23 C 1.52999 * 109.46877 * 120.25592 * 22 21 20 24 24 C 1.52998 * 109.47146 * 240.25438 * 22 21 20 25 25 N 1.31780 * 121.83583 * 0.52506 * 21 20 4 26 26 H 1.09007 * 109.46856 * 89.99662 * 1 2 3 27 27 H 1.08996 * 109.47276 * 210.00059 * 1 2 3 28 28 H 1.09004 * 109.46737 * 330.00358 * 1 2 3 29 29 H 1.07994 * 120.83061 * 359.97438 * 3 2 1 30 30 H 1.09002 * 109.46954 * 324.22343 * 6 5 4 31 31 H 1.09007 * 109.47056 * 204.22892 * 6 5 4 32 32 H 0.97003 * 120.00276 * 179.97438 * 10 9 7 33 33 H 1.08997 * 109.46962 * 209.06433 * 15 5 4 34 34 H 1.08994 * 109.47027 * 329.06882 * 15 5 4 35 35 H 1.08999 * 109.46705 * 60.00063 * 17 16 15 36 36 H 1.09002 * 109.46631 * 180.02562 * 17 16 15 37 37 H 1.08997 * 109.47341 * 299.99889 * 17 16 15 38 38 H 1.09006 * 109.46540 * 60.00606 * 18 16 15 39 39 H 1.08998 * 109.46853 * 179.97438 * 18 16 15 40 40 H 1.08987 * 109.47348 * 300.00419 * 18 16 15 41 41 H 1.08996 * 109.46969 * 66.64269 * 19 16 15 42 42 H 1.08997 * 109.47109 * 186.64077 * 19 16 15 43 43 H 1.08998 * 109.46995 * 306.64474 * 19 16 15 44 44 H 1.08995 * 109.47516 * 0.25781 * 22 21 20 45 45 H 1.09003 * 109.47406 * 60.00191 * 23 22 21 46 46 H 1.08999 * 109.46993 * 179.97438 * 23 22 21 47 47 H 1.09002 * 109.47164 * 300.00063 * 23 22 21 48 48 H 1.08997 * 109.47450 * 180.02562 * 24 22 21 49 49 H 1.09003 * 109.47250 * 299.99878 * 24 22 21 50 50 H 1.09000 * 109.47145 * 60.00025 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1913 0.0000 4 6 3.6013 1.1409 0.0005 5 7 4.3477 2.3080 0.0000 6 6 3.6775 3.6061 0.1093 7 6 3.4241 3.9200 1.5613 8 1 3.6557 3.1875 2.3205 9 6 2.8915 5.1400 1.9201 10 7 2.6040 6.0296 0.9952 11 14 2.5767 5.5288 3.7199 12 1 3.7841 6.1628 4.3078 13 1 1.4250 6.4595 3.8312 14 1 2.2710 4.2732 4.4515 15 6 5.8072 2.2441 -0.1099 16 6 6.2089 2.2651 -1.5860 17 6 5.6381 3.5187 -2.2521 18 6 7.7347 2.2772 -1.6993 19 6 5.6556 1.0204 -2.2829 20 7 4.2024 -0.0455 -0.0039 21 6 3.4955 -1.1573 0.0012 22 6 4.2140 -2.4820 0.0019 23 6 3.8225 -3.2738 1.2511 24 6 3.8237 -3.2745 -1.2473 25 7 2.1778 -1.1433 0.0006 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3633 0.8901 0.5138 29 1 1.6862 2.1379 -0.0004 30 1 2.7286 3.5713 -0.4259 31 1 4.3111 4.3798 -0.3245 32 1 2.2289 6.8879 1.2476 33 1 6.2478 3.1015 0.3987 34 1 6.1664 1.3241 0.3512 35 1 6.0323 4.4053 -1.7556 36 1 5.9239 3.5334 -3.3039 37 1 4.5511 3.5101 -2.1715 38 1 8.1413 1.3840 -1.2248 39 1 8.0208 2.2917 -2.7510 40 1 8.1288 3.1638 -1.2029 41 1 4.5670 1.0706 -2.3058 42 1 6.0387 0.9743 -3.3023 43 1 5.9668 0.1298 -1.7371 44 1 5.2905 -2.3116 0.0023 45 1 2.7460 -3.4445 1.2507 46 1 4.3419 -4.2322 1.2514 47 1 4.1006 -2.7092 2.1411 48 1 4.3430 -4.2329 -1.2467 49 1 2.7471 -3.4451 -1.2477 50 1 4.1025 -2.7104 -2.1373 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577412483.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:35:00 Heat of formation + Delta-G solvation = 22.489941 kcal Electronic energy + Delta-G solvation = -26875.188151 eV Core-core repulsion = 23515.595654 eV Total energy + Delta-G solvation = -3359.592497 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.47313 -38.08290 -35.61417 -34.66760 -33.34703 -32.25487 -30.26891 -28.16255 -27.66016 -27.01162 -26.93673 -26.71472 -24.95872 -24.07679 -22.59537 -20.82662 -19.64531 -18.48848 -16.84135 -16.68764 -16.16832 -14.95984 -14.90691 -14.75113 -14.30464 -14.22934 -14.09149 -13.95472 -13.48923 -13.07822 -12.99393 -12.69234 -12.59757 -12.32462 -12.11085 -12.00294 -11.92263 -11.77020 -11.64758 -11.33390 -11.28173 -11.25092 -11.00189 -10.94479 -10.85579 -10.71015 -10.64476 -10.38551 -10.24050 -10.21883 -9.99799 -9.70079 -9.50868 -8.81744 -8.57933 -8.43652 -6.98612 -6.16789 -4.26030 1.76997 2.14516 3.21500 3.28705 3.32913 3.74450 4.32009 4.45303 4.51008 4.77650 5.14070 5.18537 5.19519 5.21070 5.31054 5.37172 5.40026 5.54217 5.75857 5.76558 5.84449 5.87003 5.88454 5.92318 5.95261 5.96425 6.01481 6.03976 6.10213 6.17722 6.19290 6.26130 6.31848 6.32491 6.36813 6.38210 6.40281 6.51749 6.55058 6.56916 6.76568 6.78975 6.95767 7.13517 7.17118 7.56453 7.76793 8.05080 8.22927 8.27494 8.80218 9.04440 9.41356 10.87126 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.010880 B = 0.005776 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.966919 B = 4846.555572 C = 6399.174083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.184 3.816 3 C -0.282 4.282 4 C 0.452 3.548 5 N -0.569 5.569 6 C 0.249 3.751 7 C -0.534 4.534 8 H 0.058 0.942 9 C 0.066 3.934 10 N -0.892 5.892 11 Si 0.896 3.104 12 H -0.279 1.279 13 H -0.284 1.284 14 H -0.274 1.274 15 C 0.138 3.862 16 C -0.084 4.084 17 C -0.139 4.139 18 C -0.135 4.135 19 C -0.125 4.125 20 N -0.585 5.585 21 C 0.354 3.646 22 C -0.021 4.021 23 C -0.137 4.137 24 C -0.136 4.136 25 N -0.574 5.574 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.145 0.855 30 H 0.030 0.970 31 H 0.049 0.951 32 H 0.265 0.735 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.043 0.957 37 H 0.062 0.938 38 H 0.053 0.947 39 H 0.051 0.949 40 H 0.053 0.947 41 H 0.045 0.955 42 H 0.038 0.962 43 H 0.063 0.937 44 H 0.087 0.913 45 H 0.065 0.935 46 H 0.057 0.943 47 H 0.051 0.949 48 H 0.056 0.944 49 H 0.065 0.935 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.457 -12.048 -5.191 13.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.043 3.957 3 C -0.310 4.310 4 C 0.209 3.791 5 N -0.276 5.276 6 C 0.130 3.870 7 C -0.573 4.573 8 H 0.077 0.923 9 C -0.137 4.137 10 N -0.531 5.531 11 Si 0.723 3.277 12 H -0.205 1.205 13 H -0.210 1.210 14 H -0.199 1.199 15 C 0.014 3.986 16 C -0.086 4.086 17 C -0.196 4.196 18 C -0.193 4.193 19 C -0.182 4.182 20 N -0.311 5.311 21 C 0.083 3.917 22 C -0.041 4.041 23 C -0.195 4.195 24 C -0.194 4.194 25 N -0.296 5.296 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.162 0.838 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.082 0.918 44 H 0.105 0.895 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.070 0.930 48 H 0.075 0.925 49 H 0.084 0.916 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.919 -12.416 -5.216 14.026 hybrid contribution -0.626 1.443 1.042 1.887 sum 3.293 -10.973 -4.174 12.193 Atomic orbital electron populations 1.20640 0.89130 1.03166 1.02620 1.21152 0.96503 0.87910 0.90098 1.22093 0.94183 1.00693 1.14050 1.18490 0.88266 0.86384 0.86000 1.47055 1.05079 1.03960 1.71474 1.19504 0.93079 0.77420 0.97039 1.21521 1.42719 1.00541 0.92535 0.92337 1.24910 0.95161 0.95890 0.97754 1.69916 1.43280 1.07126 1.32754 0.86524 0.77947 0.78317 0.84877 1.20529 1.21017 1.19863 1.21387 0.80667 1.02384 0.94201 1.20982 0.94986 0.95995 0.96630 1.21928 1.01920 0.96803 0.98966 1.21773 0.94816 1.01505 1.01172 1.21766 1.00457 0.97447 0.98528 1.67780 1.41062 0.97352 1.24940 1.22439 0.86629 0.92866 0.89729 1.19789 0.99032 0.88786 0.96491 1.21739 1.02417 0.98919 0.96398 1.21734 1.02410 0.98914 0.96327 1.67841 1.09182 1.29828 1.22747 0.90729 0.90854 0.90589 0.83760 0.95200 0.93287 0.92538 0.90940 0.90601 0.92660 0.93824 0.91876 0.92810 0.93018 0.92757 0.93568 0.94316 0.91831 0.89474 0.91599 0.92440 0.93013 0.92451 0.91615 0.93078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.39 10.21 36.01 0.37 -1.02 16 2 C 0.18 3.33 6.82 -82.32 -0.56 2.77 16 3 C -0.28 -5.72 9.00 -39.11 -0.35 -6.08 16 4 C 0.45 9.32 5.78 -154.78 -0.89 8.42 16 5 N -0.57 -11.77 2.06 -175.03 -0.36 -12.13 16 6 C 0.25 5.90 3.55 -5.19 -0.02 5.88 16 7 C -0.53 -14.09 9.35 -34.44 -0.32 -14.41 16 8 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 9 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 10 N -0.89 -24.61 13.29 55.43 0.74 -23.87 16 11 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 15 C 0.14 2.49 4.59 -4.04 -0.02 2.47 16 16 C -0.08 -1.31 0.85 -154.51 -0.13 -1.44 16 17 C -0.14 -2.26 7.19 37.16 0.27 -1.99 16 18 C -0.13 -1.74 8.47 37.16 0.31 -1.42 16 19 C -0.12 -1.95 7.08 37.16 0.26 -1.69 16 20 N -0.59 -11.14 7.28 -9.97 -0.07 -11.22 16 21 C 0.35 6.21 6.34 -157.24 -1.00 5.22 16 22 C -0.02 -0.28 3.25 -91.77 -0.30 -0.58 16 23 C -0.14 -1.69 9.09 37.16 0.34 -1.35 16 24 C -0.14 -1.62 9.09 37.16 0.34 -1.28 16 25 N -0.57 -10.29 9.74 -7.07 -0.07 -10.36 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.08 1.04 8.09 -51.93 -0.42 0.62 16 29 H 0.14 3.09 6.28 -52.49 -0.33 2.76 16 30 H 0.03 0.75 6.36 -51.93 -0.33 0.42 16 31 H 0.05 1.21 6.41 -51.92 -0.33 0.88 16 32 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.07 1.35 8.06 -51.93 -0.42 0.93 16 34 H 0.08 1.37 7.36 -51.93 -0.38 0.99 16 35 H 0.05 0.91 7.94 -51.93 -0.41 0.50 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 1.17 6.21 -51.93 -0.32 0.84 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.68 8.14 -51.94 -0.42 0.26 16 41 H 0.05 0.83 6.66 -51.93 -0.35 0.49 16 42 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 1.01 7.42 -51.93 -0.39 0.63 16 44 H 0.09 1.17 8.09 -51.93 -0.42 0.75 16 45 H 0.06 0.85 8.01 -51.93 -0.42 0.44 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 48 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 49 H 0.06 0.83 8.01 -51.93 -0.42 0.41 16 50 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 389.93 15.07 5.88 5.88 Total: -1.00 -27.83 389.93 -9.84 -37.67 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -9.13 Total: 3.02 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -1.80 Total: -4.86 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: 0.23 Total: -57.58 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -27.83 -9.84 -37.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577412483.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.162 kcal (2) G-P(sol) polarization free energy of solvation -27.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds