Wall clock time and date at job start Tue Mar 31 2020 08:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50691 * 109.47368 * 2 1 4 4 C 1.35708 * 126.22796 * 265.09617 * 3 2 1 5 5 N 1.40792 * 126.06460 * 359.97438 * 4 3 2 6 6 C 1.46500 * 120.00153 * 185.03468 * 5 4 3 7 7 C 1.53001 * 109.47403 * 184.98559 * 6 5 4 8 8 C 1.50699 * 115.54839 * 275.76367 * 7 6 5 9 9 H 1.07998 * 119.99702 * 114.59084 * 8 7 6 10 10 C 1.37881 * 120.00221 * 294.58574 * 8 7 6 11 11 N 1.31515 * 119.99451 * 352.76991 * 10 8 7 12 12 Si 1.86795 * 119.99881 * 172.76625 * 10 8 7 13 13 H 1.48503 * 109.46921 * 90.00563 * 12 10 8 14 14 H 1.48498 * 109.46872 * 209.99977 * 12 10 8 15 15 H 1.48493 * 109.47256 * 330.00430 * 12 10 8 16 16 C 1.53004 * 117.49631 * 130.05781 * 7 6 5 17 17 C 1.52994 * 117.49673 * 61.43788 * 7 6 5 18 18 C 1.40226 * 107.86511 * 179.84545 * 4 3 2 19 19 N 1.30860 * 108.36389 * 0.42568 * 18 4 3 20 20 N 1.35973 * 126.22374 * 85.40602 * 3 2 1 21 21 C 1.46497 * 126.06926 * 359.97438 * 20 3 2 22 22 C 1.53000 * 109.46962 * 90.00085 * 21 20 3 23 23 C 1.52999 * 109.46969 * 179.97438 * 22 21 20 24 24 C 1.53004 * 109.47275 * 174.99897 * 23 22 21 25 25 C 1.53007 * 109.47563 * 295.00021 * 23 22 21 26 26 H 1.09001 * 109.46634 * 299.99641 * 1 2 3 27 27 H 1.09004 * 109.47336 * 59.99312 * 1 2 3 28 28 H 1.09000 * 109.47003 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47336 * 120.00688 * 2 1 3 30 30 H 1.09001 * 109.46634 * 240.00359 * 2 1 3 31 31 H 0.96996 * 120.00353 * 5.03493 * 5 4 3 32 32 H 1.09001 * 109.47230 * 304.99001 * 6 5 4 33 33 H 1.09001 * 109.47108 * 64.98343 * 6 5 4 34 34 H 0.97009 * 119.99316 * 185.00431 * 11 10 8 35 35 H 1.08998 * 117.50047 * 359.97438 * 16 7 6 36 36 H 1.08996 * 117.49686 * 145.02305 * 16 7 6 37 37 H 1.09007 * 117.49734 * 214.98120 * 17 7 6 38 38 H 1.09000 * 117.50426 * 359.96787 * 17 7 6 39 39 H 1.07998 * 125.81416 * 180.19899 * 18 4 3 40 40 H 1.09003 * 109.47229 * 209.99954 * 21 20 3 41 41 H 1.08996 * 109.47306 * 330.00189 * 21 20 3 42 42 H 1.08999 * 109.47528 * 299.99954 * 22 21 20 43 43 H 1.09002 * 109.47345 * 60.00267 * 22 21 20 44 44 H 1.09008 * 109.47386 * 55.00178 * 23 22 21 45 45 H 1.09000 * 109.46781 * 60.00148 * 24 23 22 46 46 H 1.09002 * 109.47136 * 180.02562 * 24 23 22 47 47 H 1.08993 * 109.47216 * 300.00512 * 24 23 22 48 48 H 1.09000 * 109.46677 * 59.99497 * 25 23 22 49 49 H 1.08994 * 109.47215 * 180.02562 * 25 23 22 50 50 H 1.09007 * 109.46432 * 300.00218 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3880 2.1457 -1.0907 5 7 2.3538 1.7035 -2.4270 6 6 2.8726 2.5608 -3.4957 7 6 2.6056 1.9039 -4.8515 8 6 3.6258 0.8864 -5.2929 9 1 3.3446 -0.1515 -5.3937 10 6 4.9181 1.2804 -5.5681 11 7 5.2263 2.5588 -5.5841 12 14 6.2309 -0.0015 -5.9180 13 1 6.2709 -0.2840 -7.3753 14 1 7.5530 0.5109 -5.4767 15 1 5.9125 -1.2502 -5.1802 16 6 1.9479 2.7614 -5.9346 17 6 1.1470 1.6571 -5.2417 18 6 2.7926 3.4142 -0.6509 19 7 2.6939 3.4491 0.6535 20 7 2.2174 2.2075 1.0934 21 6 1.9630 1.8249 2.4844 22 6 3.2298 1.2119 3.0846 23 6 2.9643 0.8129 4.5375 24 6 4.1889 0.0877 5.0993 25 6 2.6887 2.0674 5.3689 26 1 -0.3632 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 0.8899 30 1 1.8932 -0.5138 -0.8900 31 1 1.9867 0.8314 -2.6401 32 1 2.3757 3.5302 -3.4574 33 1 3.9459 2.6973 -3.3632 34 1 6.1164 2.8398 -5.8485 35 1 1.7051 3.7933 -5.6812 36 1 2.2531 2.5897 -6.9667 37 1 0.9252 0.7589 -5.8182 38 1 0.3776 1.9622 -4.5325 39 1 3.1318 4.2230 -1.2810 40 1 1.6795 2.7074 3.0580 41 1 1.1547 1.0945 2.5183 42 1 3.5134 0.3294 2.5111 43 1 4.0382 1.9424 3.0507 44 1 2.0990 0.1513 4.5804 45 1 5.0542 0.7492 5.0565 46 1 3.9995 -0.1970 6.1343 47 1 4.3853 -0.8060 4.5071 48 1 1.8163 2.5840 4.9687 49 1 2.5000 1.7831 6.4041 50 1 3.5541 2.7289 5.3260 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594706608.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:38:43 Heat of formation + Delta-G solvation = 74.492261 kcal Electronic energy + Delta-G solvation = -25489.291543 eV Core-core repulsion = 22131.954035 eV Total energy + Delta-G solvation = -3357.337507 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.74022 -37.28245 -36.86904 -34.09382 -33.83450 -32.02470 -31.78314 -28.64856 -27.75416 -27.43021 -25.70804 -24.45307 -23.78942 -23.15798 -21.14327 -20.35555 -20.06955 -19.31632 -18.80111 -16.37587 -16.22760 -15.76264 -15.29776 -14.79458 -14.61950 -14.50238 -14.10532 -13.93417 -13.77020 -13.45868 -13.40937 -13.06935 -12.75881 -12.57023 -12.41228 -12.22426 -12.09636 -11.80291 -11.59614 -11.51469 -11.25949 -11.14819 -10.98550 -10.95937 -10.88469 -10.87367 -10.81216 -10.48894 -10.22822 -10.16849 -9.48918 -9.31679 -8.77471 -8.72709 -8.53331 -8.15042 -6.24684 -6.03861 -4.09415 2.29333 2.86179 3.28391 3.36379 3.39230 3.53166 4.38578 4.44343 4.54091 4.59939 4.66155 4.85774 4.97008 5.14002 5.14393 5.20779 5.28777 5.36714 5.37813 5.44341 5.46317 5.49683 5.59910 5.62697 5.65742 5.72945 5.81174 5.88113 5.92872 5.99022 6.05237 6.08517 6.13455 6.16340 6.29298 6.40264 6.48137 6.54855 6.71266 6.77763 6.86166 7.06077 7.12734 7.42211 7.52611 7.59660 7.88760 8.16354 8.38758 8.42171 8.79771 8.93309 9.54774 11.03489 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.015810 B = 0.003363 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.612687 B = 8322.815841 C = 8945.069284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.043 4.043 3 C -0.026 4.026 4 C 0.093 3.907 5 N -0.729 5.729 6 C 0.181 3.819 7 C 0.041 3.959 8 C -0.494 4.494 9 H 0.058 0.942 10 C 0.073 3.927 11 N -0.877 5.877 12 Si 0.889 3.111 13 H -0.282 1.282 14 H -0.286 1.286 15 H -0.273 1.273 16 C -0.168 4.168 17 C -0.207 4.207 18 C 0.008 3.992 19 N -0.284 5.284 20 N -0.373 5.373 21 C 0.145 3.855 22 C -0.133 4.133 23 C -0.093 4.093 24 C -0.147 4.147 25 C -0.151 4.151 26 H 0.048 0.952 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.393 0.607 32 H 0.023 0.977 33 H 0.066 0.934 34 H 0.261 0.739 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.176 0.824 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.055 0.945 46 H 0.054 0.946 47 H 0.055 0.945 48 H 0.057 0.943 49 H 0.054 0.946 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.889 -3.471 18.063 19.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.082 4.082 3 C -0.154 4.154 4 C -0.017 4.017 5 N -0.363 5.363 6 C 0.057 3.943 7 C 0.040 3.960 8 C -0.532 4.532 9 H 0.077 0.923 10 C -0.131 4.131 11 N -0.513 5.513 12 Si 0.716 3.284 13 H -0.208 1.208 14 H -0.212 1.212 15 H -0.198 1.198 16 C -0.207 4.207 17 C -0.244 4.244 18 C -0.180 4.180 19 N -0.106 5.106 20 N -0.163 5.163 21 C 0.023 3.977 22 C -0.171 4.171 23 C -0.112 4.112 24 C -0.204 4.204 25 C -0.209 4.209 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.228 0.772 32 H 0.041 0.959 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.193 0.807 40 H 0.106 0.894 41 H 0.102 0.898 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.076 0.924 49 H 0.073 0.927 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.473 -2.491 19.128 20.347 hybrid contribution 0.635 -1.291 -1.199 1.872 sum -5.839 -3.781 17.929 19.231 Atomic orbital electron populations 1.21758 0.95173 1.01280 1.02084 1.19869 0.95472 0.90054 1.02817 1.19975 1.13583 0.95376 0.86451 1.17605 1.04732 0.93094 0.86276 1.44140 1.70724 1.20845 1.00616 1.20770 0.98163 0.90071 0.85325 1.19002 0.89073 0.97177 0.90739 1.20437 0.93184 0.93169 1.46420 0.92343 1.24946 0.98182 0.95124 0.94800 1.69963 1.20881 1.14074 1.46428 0.86644 0.81384 0.81971 0.78354 1.20772 1.21174 1.19831 1.22700 1.05476 0.93440 0.99044 1.22844 0.96364 1.00485 1.04739 1.23480 1.05043 0.97582 0.91925 1.77081 1.19733 1.01591 1.12237 1.47932 1.54048 1.09443 1.04835 1.21513 0.97610 1.00468 0.78105 1.22099 0.98219 1.01591 0.95226 1.21061 0.98789 0.97260 0.94120 1.21826 0.97711 1.00304 1.00594 1.21926 1.01938 0.97490 0.99510 0.93324 0.92147 0.92521 0.91714 0.89990 0.77242 0.95918 0.91607 0.92931 0.91813 0.90226 0.90708 0.91433 0.80663 0.89410 0.89822 0.91306 0.90986 0.91058 0.92594 0.92666 0.92600 0.92434 0.92725 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.89 37.16 0.37 -1.25 16 2 C -0.04 -0.55 5.76 -27.89 -0.16 -0.71 16 3 C -0.03 -0.41 6.23 -81.67 -0.51 -0.92 16 4 C 0.09 1.72 6.91 -83.90 -0.58 1.14 16 5 N -0.73 -14.38 5.70 -58.79 -0.34 -14.72 16 6 C 0.18 4.05 5.48 -4.04 -0.02 4.02 16 7 C 0.04 0.97 1.31 -155.66 -0.20 0.76 16 8 C -0.49 -13.03 8.82 -34.44 -0.30 -13.33 16 9 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 10 C 0.07 1.95 5.23 -17.82 -0.09 1.86 16 11 N -0.88 -24.29 12.58 55.43 0.70 -23.60 16 12 Si 0.89 20.89 29.55 -169.99 -5.02 15.87 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 15 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 16 C -0.17 -3.82 9.88 -26.73 -0.26 -4.09 16 17 C -0.21 -4.34 9.79 -26.74 -0.26 -4.60 16 18 C 0.01 0.15 11.32 -17.22 -0.19 -0.05 16 19 N -0.28 -5.03 12.57 30.70 0.39 -4.65 16 20 N -0.37 -5.69 3.64 -56.81 -0.21 -5.90 16 21 C 0.15 1.60 5.92 -4.04 -0.02 1.58 16 22 C -0.13 -1.34 5.01 -26.73 -0.13 -1.47 16 23 C -0.09 -0.72 2.92 -90.61 -0.26 -0.98 16 24 C -0.15 -1.10 9.19 37.16 0.34 -0.76 16 25 C -0.15 -1.10 8.95 37.16 0.33 -0.77 16 26 H 0.05 0.51 7.77 -51.93 -0.40 0.11 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.72 8.01 -51.93 -0.42 0.30 16 30 H 0.08 1.11 7.49 -51.93 -0.39 0.72 16 31 H 0.39 7.56 7.73 -40.82 -0.32 7.24 16 32 H 0.02 0.50 7.88 -51.93 -0.41 0.09 16 33 H 0.07 1.68 7.25 -51.93 -0.38 1.31 16 34 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 35 H 0.06 1.37 8.06 -51.93 -0.42 0.96 16 36 H 0.08 1.89 8.14 -51.93 -0.42 1.47 16 37 H 0.07 1.54 8.14 -51.92 -0.42 1.12 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 39 H 0.18 3.09 7.91 -52.49 -0.42 2.67 16 40 H 0.09 0.92 6.56 -51.93 -0.34 0.58 16 41 H 0.08 0.78 7.45 -51.93 -0.39 0.39 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 45 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.06 0.41 6.56 -51.93 -0.34 0.07 16 49 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 402.65 15.07 6.07 6.07 Total: -1.00 -28.52 402.65 -9.64 -38.16 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -9.25 Total: 8.33 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: -1.97 Total: -19.56 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: 0.54 Total: -48.85 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -28.52 -9.64 -38.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594706608.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.650 kcal (2) G-P(sol) polarization free energy of solvation -28.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds