Wall clock time and date at job start Tue Mar 31 2020 08:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47168 * 3.84362 * 3 2 1 5 5 H 1.09004 * 109.50575 * 55.07653 * 4 3 2 6 6 C 1.53120 * 109.50304 * 294.99781 * 4 3 2 7 7 C 1.53118 * 109.16175 * 182.40623 * 6 4 3 8 8 C 1.53038 * 109.27972 * 57.65357 * 7 6 4 9 9 N 1.46845 * 109.52050 * 300.82278 * 8 7 6 10 10 C 1.46902 * 110.99731 * 185.84027 * 9 8 7 11 11 C 1.52996 * 109.47419 * 66.04432 * 10 9 8 12 12 N 1.46901 * 109.47064 * 180.02562 * 11 10 9 13 13 C 1.46845 * 111.00312 * 66.05030 * 12 11 10 14 14 C 1.53035 * 109.52663 * 185.83771 * 13 12 11 15 15 C 1.53116 * 109.27877 * 300.81818 * 14 13 12 16 16 C 1.53121 * 109.16223 * 57.65072 * 15 14 13 17 17 H 1.09008 * 109.50259 * 62.28374 * 16 15 14 18 18 C 1.50696 * 109.50735 * 182.36639 * 16 15 14 19 19 H 1.07999 * 120.00406 * 120.00064 * 18 16 15 20 20 C 1.37882 * 119.99724 * 300.00301 * 18 16 15 21 21 N 1.31515 * 120.00163 * 359.97438 * 20 18 16 22 22 Si 1.86801 * 119.99695 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46960 * 89.99945 * 22 20 18 24 24 H 1.48504 * 109.46992 * 209.99936 * 22 20 18 25 25 H 1.48501 * 109.47315 * 330.00020 * 22 20 18 26 26 C 1.46852 * 110.99929 * 190.25528 * 12 11 10 27 27 C 1.46845 * 111.20053 * 61.74354 * 9 8 7 28 28 H 1.09001 * 109.47046 * 123.83988 * 3 2 1 29 29 H 1.08996 * 109.47366 * 243.84392 * 3 2 1 30 30 H 1.08997 * 109.52348 * 302.30782 * 6 4 3 31 31 H 1.08996 * 109.52081 * 62.43982 * 6 4 3 32 32 H 1.09004 * 109.50326 * 177.59787 * 7 6 4 33 33 H 1.09003 * 109.50624 * 297.67204 * 7 6 4 34 34 H 1.09000 * 109.46265 * 60.84024 * 8 7 6 35 35 H 1.08998 * 109.46051 * 180.80839 * 8 7 6 36 36 H 1.09002 * 109.47416 * 186.04556 * 10 9 8 37 37 H 1.09004 * 109.46997 * 306.04405 * 10 9 8 38 38 H 1.09000 * 109.47122 * 299.99921 * 11 10 9 39 39 H 1.09004 * 109.47058 * 60.00010 * 11 10 9 40 40 H 1.09005 * 109.46084 * 305.85214 * 13 12 11 41 41 H 1.08995 * 109.46624 * 65.81677 * 13 12 11 42 42 H 1.09003 * 109.49872 * 60.75994 * 14 13 12 43 43 H 1.09003 * 109.50544 * 180.83496 * 14 13 12 44 44 H 1.08994 * 109.52610 * 177.55492 * 15 14 13 45 45 H 1.09001 * 109.52472 * 297.74978 * 15 14 13 46 46 H 0.97001 * 119.99674 * 180.02562 * 21 20 18 47 47 H 1.09004 * 109.46312 * 294.18055 * 26 12 11 48 48 H 1.09003 * 109.45941 * 54.14298 * 26 12 11 49 49 H 1.08995 * 109.46336 * 178.24131 * 27 9 8 50 50 H 1.08993 * 109.46496 * 58.26983 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.4383 -0.0967 5 1 2.6856 -1.9201 -0.9734 6 6 2.7143 -2.2099 1.1626 7 6 3.2803 -3.6306 1.0849 8 6 4.8012 -3.5608 0.9299 9 7 5.1364 -2.8137 -0.2890 10 6 6.5828 -2.8447 -0.5444 11 6 7.0135 -4.2773 -0.8654 12 7 8.4599 -4.3083 -1.1201 13 6 9.2155 -3.9806 0.0956 14 6 10.7053 -3.8797 -0.2398 15 6 11.1850 -5.2142 -0.8170 16 6 10.3498 -5.5561 -2.0540 17 1 10.4991 -4.7917 -2.8166 18 6 10.7766 -6.8964 -2.5947 19 1 10.0634 -7.7050 -2.6585 20 6 12.0776 -7.0905 -3.0078 21 7 12.9460 -6.1058 -2.9305 22 14 12.6069 -8.7522 -3.6774 23 1 12.3978 -8.7829 -5.1473 24 1 14.0446 -8.9717 -3.3772 25 1 11.7990 -9.8228 -3.0400 26 6 8.8703 -5.6083 -1.6660 27 6 4.6442 -1.4321 -0.2174 28 1 2.9710 0.5731 -0.8536 29 1 2.9711 0.4538 0.9224 30 1 3.1142 -1.7062 2.0426 31 1 1.6273 -2.2531 1.2300 32 1 3.0320 -4.1717 1.9980 33 1 2.8499 -4.1475 0.2272 34 1 5.2317 -3.0564 1.7950 35 1 5.2058 -4.5705 0.8599 36 1 6.8166 -2.1971 -1.3894 37 1 7.1154 -2.4947 0.3399 38 1 6.7798 -4.9249 -0.0204 39 1 6.4808 -4.6273 -1.7497 40 1 8.8675 -3.0273 0.4936 41 1 9.0629 -4.7620 0.8399 42 1 10.8603 -3.0889 -0.9738 43 1 11.2675 -3.6510 0.6656 44 1 12.2351 -5.1333 -1.0977 45 1 11.0662 -5.9984 -0.0693 46 1 13.8612 -6.2424 -3.2215 47 1 8.7193 -6.3823 -0.9135 48 1 8.2715 -5.8374 -2.5475 49 1 4.9348 -0.8957 -1.1206 50 1 5.0753 -0.9376 0.6530 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595620002.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:32:20 Heat of formation + Delta-G solvation = 11.992315 kcal Electronic energy + Delta-G solvation = -25181.034077 eV Core-core repulsion = 21820.986369 eV Total energy + Delta-G solvation = -3360.047708 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.75518 -38.24393 -37.02593 -34.98399 -33.48430 -32.39698 -31.63660 -29.93386 -28.48736 -27.48179 -24.96216 -24.48863 -22.94142 -22.32240 -21.66555 -20.24544 -20.01715 -18.60647 -17.85941 -16.54675 -16.17090 -15.51133 -15.30377 -15.09481 -14.66215 -14.54735 -14.38708 -14.14076 -13.90335 -13.56533 -13.42889 -13.11038 -12.96216 -12.90442 -12.51889 -12.44521 -12.25444 -12.05789 -11.90123 -11.58210 -11.42527 -11.31585 -11.12788 -10.94683 -10.85163 -10.69687 -10.61399 -10.55977 -10.47218 -10.08621 -9.82792 -9.45693 -9.02792 -8.69323 -8.44388 -8.28066 -7.64575 -5.96303 -4.02253 2.39859 2.45054 3.31659 3.38328 3.41141 3.46796 3.75920 4.29439 4.40769 4.43600 4.54854 4.66391 4.84913 4.97136 5.01956 5.02858 5.14615 5.18213 5.28824 5.29903 5.33805 5.42682 5.46060 5.57734 5.67651 5.68557 5.76905 5.80042 5.80562 5.91368 6.02652 6.07745 6.12351 6.13412 6.32009 6.42976 6.53013 6.71123 6.76217 6.94259 6.94809 6.99641 7.22292 7.22891 7.41744 7.67433 7.76797 7.84333 8.10033 8.18924 8.49710 9.01858 9.61919 11.09619 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.032680 B = 0.002301 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.591568 B =12163.448884 C =12370.147927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C 0.210 3.790 3 C -0.024 4.024 4 C -0.081 4.081 5 H 0.090 0.910 6 C -0.119 4.119 7 C -0.116 4.116 8 C 0.051 3.949 9 N -0.538 5.538 10 C 0.062 3.938 11 C 0.060 3.940 12 N -0.538 5.538 13 C 0.061 3.939 14 C -0.117 4.117 15 C -0.111 4.111 16 C 0.055 3.945 17 H 0.034 0.966 18 C -0.514 4.514 19 H 0.053 0.947 20 C 0.062 3.938 21 N -0.888 5.888 22 Si 0.890 3.110 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.275 1.275 26 C 0.070 3.930 27 C 0.064 3.936 28 H 0.113 0.887 29 H 0.108 0.892 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.032 0.968 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.034 0.966 38 H 0.024 0.976 39 H 0.078 0.922 40 H 0.057 0.943 41 H 0.020 0.980 42 H 0.060 0.940 43 H 0.045 0.955 44 H 0.091 0.909 45 H 0.029 0.971 46 H 0.259 0.741 47 H 0.018 0.982 48 H 0.059 0.941 49 H 0.082 0.918 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.686 11.219 9.067 21.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.118 5.118 2 C -0.107 4.107 3 C -0.065 4.065 4 C -0.101 4.101 5 H 0.108 0.892 6 C -0.157 4.157 7 C -0.154 4.154 8 C -0.077 4.077 9 N -0.262 5.262 10 C -0.066 4.066 11 C -0.069 4.069 12 N -0.263 5.263 13 C -0.067 4.067 14 C -0.155 4.155 15 C -0.149 4.149 16 C 0.036 3.964 17 H 0.052 0.948 18 C -0.553 4.553 19 H 0.071 0.929 20 C -0.139 4.139 21 N -0.527 5.527 22 Si 0.718 3.282 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.200 1.200 26 C -0.057 4.057 27 C -0.064 4.064 28 H 0.131 0.869 29 H 0.126 0.874 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.050 0.950 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.052 0.948 38 H 0.043 0.957 39 H 0.096 0.904 40 H 0.075 0.925 41 H 0.039 0.961 42 H 0.079 0.921 43 H 0.063 0.937 44 H 0.109 0.891 45 H 0.047 0.953 46 H 0.069 0.931 47 H 0.036 0.964 48 H 0.078 0.922 49 H 0.100 0.900 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -17.320 11.382 8.288 22.321 hybrid contribution 1.010 -1.165 0.989 1.832 sum -16.310 10.217 9.277 21.365 Atomic orbital electron populations 1.81246 1.13120 1.08499 1.08968 1.29165 0.95294 0.93169 0.93120 1.19379 0.81685 0.99535 1.05875 1.21183 0.96039 0.92775 1.00124 0.89195 1.21706 1.00526 0.96283 0.97196 1.21566 0.95109 0.96483 1.02227 1.22169 0.95829 0.99253 0.90450 1.61769 1.15004 1.13094 1.36378 1.22109 0.85331 0.98462 1.00684 1.22017 0.89699 0.94884 1.00269 1.61917 1.02304 1.33375 1.28741 1.22071 0.95507 0.98476 0.90600 1.21674 0.93244 1.01019 0.99572 1.21650 1.03817 0.92181 0.97223 1.18663 0.87220 0.96792 0.93725 0.94768 1.21151 0.95378 0.97235 1.41500 0.92861 1.24937 0.96730 0.96539 0.95687 1.69891 1.04058 1.31166 1.47615 0.86632 0.77705 0.84528 0.79330 1.20699 1.21312 1.20046 1.22293 1.00195 0.86075 0.97125 1.22035 0.93248 0.89792 1.01367 0.86939 0.87377 0.91767 0.92049 0.91514 0.90931 0.94979 0.90268 0.89776 0.94774 0.95743 0.90399 0.92487 0.96132 0.92099 0.93677 0.89112 0.95256 0.93088 0.96416 0.92208 0.90008 0.94462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -4.86 18.54 42.15 0.78 -4.08 16 2 C 0.21 1.58 14.45 -20.76 -0.30 1.28 16 3 C -0.02 -0.09 5.19 -29.52 -0.15 -0.24 16 4 C -0.08 -0.46 2.33 -90.54 -0.21 -0.67 16 5 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 6 C -0.12 -0.76 5.05 -26.61 -0.13 -0.90 16 7 C -0.12 -0.88 6.09 -26.65 -0.16 -1.04 16 8 C 0.05 0.46 5.29 -3.83 -0.02 0.44 16 9 N -0.54 -5.16 4.65 -234.68 -1.09 -6.25 16 10 C 0.06 0.71 4.89 -3.82 -0.02 0.69 16 11 C 0.06 0.86 4.89 -3.83 -0.02 0.84 16 12 N -0.54 -9.55 4.66 -234.67 -1.09 -10.64 16 13 C 0.06 1.04 5.29 -3.84 -0.02 1.02 16 14 C -0.12 -2.23 6.09 -26.65 -0.16 -2.40 16 15 C -0.11 -2.58 5.02 -26.61 -0.13 -2.72 16 16 C 0.05 1.35 2.26 -91.69 -0.21 1.15 16 17 H 0.03 0.94 8.14 -51.92 -0.42 0.52 16 18 C -0.51 -13.98 8.57 -34.44 -0.30 -14.27 16 19 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 20 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 21 N -0.89 -25.15 11.35 55.43 0.63 -24.52 16 22 Si 0.89 21.15 29.54 -169.99 -5.02 16.12 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 C 0.07 1.46 4.68 -3.83 -0.02 1.45 16 27 C 0.06 0.43 4.74 -3.83 -0.02 0.42 16 28 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.11 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.43 7.47 -51.93 -0.39 0.04 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 0.80 6.22 -51.93 -0.32 0.48 16 36 H 0.08 1.00 7.98 -51.93 -0.41 0.59 16 37 H 0.03 0.40 6.42 -51.93 -0.33 0.07 16 38 H 0.02 0.35 6.42 -51.93 -0.33 0.02 16 39 H 0.08 1.16 7.98 -51.93 -0.41 0.74 16 40 H 0.06 0.83 6.22 -51.93 -0.32 0.51 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 43 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.09 2.38 6.15 -51.93 -0.32 2.06 16 45 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.06 1.24 8.01 -51.93 -0.42 0.83 16 49 H 0.08 0.51 8.01 -51.93 -0.42 0.09 16 50 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 LS Contribution 381.14 15.07 5.74 5.74 Total: -1.00 -29.97 381.14 -11.16 -41.13 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -9.14 Total: -4.16 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -1.97 Total: -13.35 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: -0.77 Total: -45.49 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.97 -11.16 -41.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595620002.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.118 kcal (2) G-P(sol) polarization free energy of solvation -29.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds