Wall clock time and date at job start Tue Mar 31 2020 08:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47168 * 3.84362 * 3 2 1 5 5 H 1.09004 * 109.50575 * 55.07653 * 4 3 2 6 6 C 1.53120 * 109.50304 * 294.99781 * 4 3 2 7 7 C 1.53118 * 109.16175 * 182.40623 * 6 4 3 8 8 C 1.53038 * 109.27972 * 57.65357 * 7 6 4 9 9 N 1.46845 * 109.52050 * 300.82278 * 8 7 6 10 10 C 1.46902 * 110.99731 * 185.84027 * 9 8 7 11 11 C 1.52996 * 109.47419 * 66.04432 * 10 9 8 12 12 N 1.46901 * 109.47064 * 180.02562 * 11 10 9 13 13 C 1.46845 * 111.00312 * 66.05030 * 12 11 10 14 14 C 1.53035 * 109.52663 * 185.83771 * 13 12 11 15 15 C 1.53116 * 109.27877 * 300.81818 * 14 13 12 16 16 C 1.53121 * 109.16223 * 57.65072 * 15 14 13 17 17 H 1.09008 * 109.50259 * 62.28374 * 16 15 14 18 18 C 1.50696 * 109.50735 * 182.36639 * 16 15 14 19 19 H 1.07999 * 120.00406 * 120.00064 * 18 16 15 20 20 C 1.37882 * 119.99724 * 300.00301 * 18 16 15 21 21 N 1.31515 * 120.00163 * 359.97438 * 20 18 16 22 22 Si 1.86801 * 119.99695 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46960 * 89.99945 * 22 20 18 24 24 H 1.48504 * 109.46992 * 209.99936 * 22 20 18 25 25 H 1.48501 * 109.47315 * 330.00020 * 22 20 18 26 26 C 1.46852 * 110.99929 * 190.25528 * 12 11 10 27 27 C 1.46845 * 111.20053 * 61.74354 * 9 8 7 28 28 H 1.09001 * 109.47046 * 123.83988 * 3 2 1 29 29 H 1.08996 * 109.47366 * 243.84392 * 3 2 1 30 30 H 1.08997 * 109.52348 * 302.30782 * 6 4 3 31 31 H 1.08996 * 109.52081 * 62.43982 * 6 4 3 32 32 H 1.09004 * 109.50326 * 177.59787 * 7 6 4 33 33 H 1.09003 * 109.50624 * 297.67204 * 7 6 4 34 34 H 1.09000 * 109.46265 * 60.84024 * 8 7 6 35 35 H 1.08998 * 109.46051 * 180.80839 * 8 7 6 36 36 H 1.09002 * 109.47416 * 186.04556 * 10 9 8 37 37 H 1.09004 * 109.46997 * 306.04405 * 10 9 8 38 38 H 1.09000 * 109.47122 * 299.99921 * 11 10 9 39 39 H 1.09004 * 109.47058 * 60.00010 * 11 10 9 40 40 H 1.09005 * 109.46084 * 305.85214 * 13 12 11 41 41 H 1.08995 * 109.46624 * 65.81677 * 13 12 11 42 42 H 1.09003 * 109.49872 * 60.75994 * 14 13 12 43 43 H 1.09003 * 109.50544 * 180.83496 * 14 13 12 44 44 H 1.08994 * 109.52610 * 177.55492 * 15 14 13 45 45 H 1.09001 * 109.52472 * 297.74978 * 15 14 13 46 46 H 0.97001 * 119.99674 * 180.02562 * 21 20 18 47 47 H 1.09004 * 109.46312 * 294.18055 * 26 12 11 48 48 H 1.09003 * 109.45941 * 54.14298 * 26 12 11 49 49 H 1.08995 * 109.46336 * 178.24131 * 27 9 8 50 50 H 1.08993 * 109.46496 * 58.26983 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.4383 -0.0967 5 1 2.6856 -1.9201 -0.9734 6 6 2.7143 -2.2099 1.1626 7 6 3.2803 -3.6306 1.0849 8 6 4.8012 -3.5608 0.9299 9 7 5.1364 -2.8137 -0.2890 10 6 6.5828 -2.8447 -0.5444 11 6 7.0135 -4.2773 -0.8654 12 7 8.4599 -4.3083 -1.1201 13 6 9.2155 -3.9806 0.0956 14 6 10.7053 -3.8797 -0.2398 15 6 11.1850 -5.2142 -0.8170 16 6 10.3498 -5.5561 -2.0540 17 1 10.4991 -4.7917 -2.8166 18 6 10.7766 -6.8964 -2.5947 19 1 10.0634 -7.7050 -2.6585 20 6 12.0776 -7.0905 -3.0078 21 7 12.9460 -6.1058 -2.9305 22 14 12.6069 -8.7522 -3.6774 23 1 12.3978 -8.7829 -5.1473 24 1 14.0446 -8.9717 -3.3772 25 1 11.7990 -9.8228 -3.0400 26 6 8.8703 -5.6083 -1.6660 27 6 4.6442 -1.4321 -0.2174 28 1 2.9710 0.5731 -0.8536 29 1 2.9711 0.4538 0.9224 30 1 3.1142 -1.7062 2.0426 31 1 1.6273 -2.2531 1.2300 32 1 3.0320 -4.1717 1.9980 33 1 2.8499 -4.1475 0.2272 34 1 5.2317 -3.0564 1.7950 35 1 5.2058 -4.5705 0.8599 36 1 6.8166 -2.1971 -1.3894 37 1 7.1154 -2.4947 0.3399 38 1 6.7798 -4.9249 -0.0204 39 1 6.4808 -4.6273 -1.7497 40 1 8.8675 -3.0273 0.4936 41 1 9.0629 -4.7620 0.8399 42 1 10.8603 -3.0889 -0.9738 43 1 11.2675 -3.6510 0.6656 44 1 12.2351 -5.1333 -1.0977 45 1 11.0662 -5.9984 -0.0693 46 1 13.8612 -6.2424 -3.2215 47 1 8.7193 -6.3823 -0.9135 48 1 8.2715 -5.8374 -2.5475 49 1 4.9348 -0.8957 -1.1206 50 1 5.0753 -0.9376 0.6530 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595620002.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:32:19 Heat of formation + Delta-G solvation = -6.039319 kcal Electronic energy + Delta-G solvation = -25181.815988 eV Core-core repulsion = 21820.986369 eV Total energy + Delta-G solvation = -3360.829618 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.48406 -39.61739 -37.73878 -36.10976 -34.91367 -33.42005 -32.82894 -31.68664 -29.44590 -28.16934 -26.89653 -25.51459 -23.69876 -23.48203 -23.21977 -21.37966 -20.59912 -20.33051 -18.44664 -18.32167 -17.19206 -16.71606 -16.25801 -16.07704 -15.82987 -15.50514 -15.42132 -15.04731 -14.93086 -14.79484 -14.46068 -14.42220 -14.04001 -13.96826 -13.80832 -13.51612 -13.39836 -13.05312 -12.85424 -12.81255 -12.65799 -12.54558 -12.40199 -12.23749 -11.95290 -11.91205 -11.77366 -11.68503 -11.47018 -11.38827 -11.20395 -11.11405 -10.79357 -10.62817 -10.35512 -9.20354 -9.03083 -8.06253 -6.20027 1.42216 1.42785 1.52712 1.83197 1.90287 2.43682 2.75216 3.16739 3.20509 3.42498 3.85567 3.89481 3.99547 4.11825 4.18213 4.23482 4.32916 4.36423 4.46851 4.51353 4.56856 4.62503 4.66044 4.69818 4.72054 4.76798 4.85011 4.86260 4.91921 4.96247 5.00759 5.06806 5.09607 5.10945 5.15760 5.19411 5.23309 5.26160 5.34763 5.43657 5.53845 5.55487 5.65864 5.99369 6.14198 6.18914 6.23053 6.30801 6.43455 6.49144 6.69332 6.92648 7.47515 8.98165 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.032680 B = 0.002301 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.591568 B =12163.448884 C =12370.147927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C 0.238 3.762 3 C -0.018 4.018 4 C -0.074 4.074 5 H 0.075 0.925 6 C -0.117 4.117 7 C -0.114 4.114 8 C 0.053 3.947 9 N -0.549 5.549 10 C 0.075 3.925 11 C 0.064 3.936 12 N -0.546 5.546 13 C 0.067 3.933 14 C -0.111 4.111 15 C -0.104 4.104 16 C 0.053 3.947 17 H -0.002 1.002 18 C -0.536 4.536 19 H 0.050 0.950 20 C 0.013 3.987 21 N -0.914 5.914 22 Si 0.953 3.047 23 H -0.276 1.276 24 H -0.283 1.283 25 H -0.270 1.270 26 C 0.084 3.916 27 C 0.063 3.937 28 H 0.141 0.859 29 H 0.138 0.862 30 H 0.078 0.922 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.039 0.961 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.040 0.960 38 H 0.027 0.973 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.021 0.979 42 H 0.052 0.948 43 H 0.069 0.931 44 H 0.058 0.942 45 H 0.020 0.980 46 H 0.260 0.740 47 H 0.011 0.989 48 H 0.054 0.946 49 H 0.092 0.908 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.182 12.446 10.214 22.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.078 4.078 3 C -0.058 4.058 4 C -0.094 4.094 5 H 0.094 0.906 6 C -0.155 4.155 7 C -0.152 4.152 8 C -0.075 4.075 9 N -0.274 5.274 10 C -0.053 4.053 11 C -0.064 4.064 12 N -0.271 5.271 13 C -0.061 4.061 14 C -0.148 4.148 15 C -0.143 4.143 16 C 0.034 3.966 17 H 0.016 0.984 18 C -0.575 4.575 19 H 0.068 0.932 20 C -0.185 4.185 21 N -0.553 5.553 22 Si 0.779 3.221 23 H -0.202 1.202 24 H -0.209 1.209 25 H -0.195 1.195 26 C -0.044 4.044 27 C -0.064 4.064 28 H 0.158 0.842 29 H 0.155 0.845 30 H 0.097 0.903 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.058 0.942 38 H 0.045 0.955 39 H 0.087 0.913 40 H 0.110 0.890 41 H 0.039 0.961 42 H 0.071 0.929 43 H 0.087 0.913 44 H 0.076 0.924 45 H 0.038 0.962 46 H 0.069 0.931 47 H 0.030 0.970 48 H 0.073 0.927 49 H 0.110 0.890 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.836 12.619 9.442 23.801 hybrid contribution 1.182 -1.559 0.622 2.053 sum -16.653 11.060 10.064 22.381 Atomic orbital electron populations 1.81274 1.15379 1.10715 1.11492 1.29836 0.95878 0.91140 0.90995 1.19619 0.78922 0.98633 1.08612 1.21072 0.95424 0.93798 0.99124 0.90643 1.21700 0.99941 0.95648 0.98215 1.21534 0.94247 0.97465 1.01925 1.22138 0.96507 0.98420 0.90461 1.61720 1.13637 1.15138 1.36944 1.21887 0.86713 0.95959 1.00778 1.22031 0.87173 0.97260 0.99985 1.61854 1.04527 1.31071 1.29621 1.22068 0.93736 1.00225 0.90069 1.21586 0.95307 0.97859 1.00079 1.21460 1.01751 0.94537 0.96518 1.18583 0.90107 0.94586 0.93316 0.98393 1.21528 0.95703 0.98302 1.41940 0.93217 1.25711 0.96824 0.99994 0.96001 1.70030 1.04237 1.32916 1.48164 0.85638 0.77329 0.80415 0.78740 1.20158 1.20857 1.19455 1.21946 0.97601 0.87834 0.97008 1.22122 0.93528 0.88185 1.02599 0.84157 0.84472 0.90342 0.92903 0.90951 0.92308 0.94290 0.91893 0.89935 0.94216 0.95467 0.91326 0.89020 0.96084 0.92870 0.91279 0.92388 0.96160 0.93076 0.97028 0.92701 0.88996 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -10.99 18.54 20.01 0.37 -10.62 16 2 C 0.24 3.13 14.45 89.44 1.29 4.43 16 3 C -0.02 -0.07 5.19 28.79 0.15 0.08 16 4 C -0.07 -0.62 2.33 -10.74 -0.02 -0.65 16 5 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 6 C -0.12 -1.22 5.05 30.67 0.15 -1.06 16 7 C -0.11 -1.55 6.09 30.65 0.19 -1.37 16 8 C 0.05 0.84 5.29 86.33 0.46 1.30 16 9 N -0.55 -9.17 4.65 -896.38 -4.17 -13.34 16 10 C 0.07 1.52 4.89 86.30 0.42 1.95 16 11 C 0.06 1.73 4.89 86.30 0.42 2.15 16 12 N -0.55 -18.83 4.66 -896.35 -4.17 -23.00 16 13 C 0.07 2.11 5.29 86.33 0.46 2.57 16 14 C -0.11 -4.10 6.09 30.64 0.19 -3.91 16 15 C -0.10 -4.97 5.02 30.67 0.15 -4.82 16 16 C 0.05 2.69 2.26 -11.49 -0.03 2.67 16 17 H 0.00 -0.12 8.14 -2.38 -0.02 -0.14 16 18 C -0.54 -29.92 8.57 25.60 0.22 -29.70 16 19 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 20 C 0.01 0.75 5.30 84.66 0.45 1.20 16 21 N -0.91 -53.06 11.35 21.45 0.24 -52.81 16 22 Si 0.95 43.86 29.54 68.60 2.03 45.89 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 24 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 25 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 26 C 0.08 3.55 4.68 86.32 0.40 3.96 16 27 C 0.06 0.63 4.74 86.33 0.41 1.04 16 28 H 0.14 -0.12 8.14 -2.39 -0.02 -0.14 16 29 H 0.14 -0.14 8.14 -2.39 -0.02 -0.16 16 30 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.05 0.66 7.47 -2.39 -0.02 0.64 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.04 0.57 8.14 -2.39 -0.02 0.56 16 35 H 0.06 1.20 6.22 -2.39 -0.01 1.18 16 36 H 0.08 1.74 7.98 -2.39 -0.02 1.72 16 37 H 0.04 0.77 6.42 -2.38 -0.02 0.76 16 38 H 0.03 0.74 6.42 -2.39 -0.02 0.72 16 39 H 0.07 1.99 7.98 -2.38 -0.02 1.97 16 40 H 0.09 2.33 6.22 -2.38 -0.01 2.31 16 41 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.06 3.13 6.15 -2.39 -0.01 3.12 16 45 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 47 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 48 H 0.05 2.33 8.01 -2.39 -0.02 2.31 16 49 H 0.09 0.77 8.01 -2.39 -0.02 0.75 16 50 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 Total: -1.00 -67.82 381.14 0.50 -67.32 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: 0.89 Total: 6.76 kcal Atomic # 6 Polarization: -25.50 SS G_CDS: 5.31 Total: -20.18 kcal Atomic # 7 Polarization: -92.05 SS G_CDS: -7.73 Total: -99.78 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -67.82 0.50 -67.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595620002.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.280 kcal (2) G-P(sol) polarization free energy of solvation -67.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds