Wall clock time and date at job start Tue Mar 31 2020 08:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.52995 * 109.46970 * 257.11886 * 3 2 1 5 5 H 1.08998 * 109.50577 * 304.92584 * 4 3 2 6 6 C 1.53118 * 109.50353 * 65.00788 * 4 3 2 7 7 C 1.53113 * 109.16258 * 177.59329 * 6 4 3 8 8 C 1.53033 * 109.28098 * 302.34388 * 7 6 4 9 9 N 1.46856 * 109.52139 * 59.17649 * 8 7 6 10 10 C 1.46901 * 110.99708 * 174.16312 * 9 8 7 11 11 C 1.53000 * 109.47158 * 66.04947 * 10 9 8 12 12 N 1.46901 * 109.47158 * 179.97438 * 11 10 9 13 13 C 1.46830 * 110.98168 * 294.21498 * 12 11 10 14 14 C 1.53038 * 109.51757 * 174.15669 * 13 12 11 15 15 C 1.53127 * 109.27941 * 59.17550 * 14 13 12 16 16 C 1.53117 * 109.15989 * 302.34585 * 15 14 13 17 17 H 1.09001 * 109.50874 * 297.71787 * 16 15 14 18 18 C 1.50701 * 109.53492 * 177.61137 * 16 15 14 19 19 H 1.07998 * 120.00331 * 240.17575 * 18 16 15 20 20 C 1.37879 * 119.99919 * 60.18201 * 18 16 15 21 21 N 1.31516 * 119.99798 * 359.97438 * 20 18 16 22 22 Si 1.86796 * 120.00064 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47340 * 89.99743 * 22 20 18 24 24 H 1.48509 * 109.46829 * 209.99736 * 22 20 18 25 25 H 1.48504 * 109.47147 * 329.99252 * 22 20 18 26 26 C 1.46847 * 111.00144 * 170.00079 * 12 11 10 27 27 C 1.46842 * 111.19681 * 298.26065 * 9 8 7 28 28 H 1.09006 * 109.46473 * 137.12127 * 3 2 1 29 29 H 1.08995 * 109.47419 * 17.12984 * 3 2 1 30 30 H 1.09001 * 109.52539 * 57.68582 * 6 4 3 31 31 H 1.09002 * 109.57571 * 297.52905 * 6 4 3 32 32 H 1.08998 * 109.50563 * 182.40245 * 7 6 4 33 33 H 1.09007 * 109.53606 * 62.30581 * 7 6 4 34 34 H 1.09005 * 109.45957 * 299.16642 * 8 7 6 35 35 H 1.08993 * 109.45743 * 179.18922 * 8 7 6 36 36 H 1.09002 * 109.47416 * 306.04895 * 10 9 8 37 37 H 1.08998 * 109.47258 * 186.04874 * 10 9 8 38 38 H 1.09001 * 109.47466 * 59.99936 * 11 10 9 39 39 H 1.09002 * 109.47083 * 299.99350 * 11 10 9 40 40 H 1.08995 * 109.46742 * 54.13906 * 13 12 11 41 41 H 1.09004 * 109.46459 * 294.16736 * 13 12 11 42 42 H 1.08997 * 109.50308 * 299.23764 * 14 13 12 43 43 H 1.09000 * 109.50697 * 179.11489 * 14 13 12 44 44 H 1.08997 * 109.52581 * 182.44219 * 15 14 13 45 45 H 1.09004 * 109.51868 * 62.24855 * 15 14 13 46 46 H 0.96996 * 119.99812 * 180.02562 * 21 20 18 47 47 H 1.09002 * 109.46448 * 65.81961 * 26 12 11 48 48 H 1.08994 * 109.45958 * 305.84326 * 26 12 11 49 49 H 1.08998 * 109.45852 * 181.75693 * 27 9 8 50 50 H 1.08999 * 109.46682 * 301.72601 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1178 0.3225 1.4062 5 1 2.6841 1.2636 1.7440 6 6 2.7138 -0.8002 2.3658 7 6 3.2789 -0.5001 3.7568 8 6 4.7998 -0.3572 3.6643 9 7 5.1349 0.7296 2.7351 10 6 6.5810 0.9874 2.7263 11 6 7.3118 -0.2254 2.1465 12 7 8.7579 0.0327 2.1371 13 6 9.0913 1.1234 1.2124 14 6 10.5787 1.4617 1.3359 15 6 11.4091 0.2175 1.0081 16 6 11.0080 -0.9179 1.9539 17 1 11.2308 -0.6314 2.9816 18 6 11.7784 -2.1640 1.6005 19 1 11.2513 -3.0590 1.3046 20 6 13.1561 -2.1614 1.6551 21 7 13.7978 -1.0714 2.0151 22 14 14.1110 -3.7062 1.2178 23 1 14.4162 -3.7047 -0.2355 24 1 15.3791 -3.7394 1.9899 25 1 13.2968 -4.9025 1.5514 26 6 9.5081 -1.1872 1.8124 27 6 4.6433 0.4415 1.3817 28 1 2.9709 0.7540 -0.6993 29 1 2.9718 -0.9812 -0.3027 30 1 3.1143 -1.7482 2.0066 31 1 1.6268 -0.8611 2.4196 32 1 3.0308 -1.3170 4.4344 33 1 2.8483 0.4281 4.1327 34 1 5.2309 -1.2905 3.3020 35 1 5.2037 -0.1292 4.6506 36 1 6.9246 1.1657 3.7453 37 1 6.7900 1.8645 2.1138 38 1 6.9683 -0.4037 1.1276 39 1 7.1029 -1.1024 2.7591 40 1 8.4971 2.0032 1.4590 41 1 8.8732 0.8127 0.1906 42 1 10.7950 1.7856 2.3539 43 1 10.8294 2.2606 0.6381 44 1 12.4679 0.4419 1.1369 45 1 11.2223 -0.0838 -0.0227 46 1 14.7671 -1.0695 2.0531 47 1 9.2879 -1.4871 0.7878 48 1 9.2164 -1.9853 2.4950 49 1 4.9338 1.2495 0.7103 50 1 5.0752 -0.4955 1.0302 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595620003.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:32:24 Heat of formation + Delta-G solvation = 12.112726 kcal Electronic energy + Delta-G solvation = -25504.552601 eV Core-core repulsion = 22144.510114 eV Total energy + Delta-G solvation = -3360.042487 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -39.89389 -38.22934 -37.01685 -35.00266 -33.49085 -32.43059 -31.51678 -29.94817 -28.23398 -27.51472 -25.02141 -24.72874 -22.83710 -22.28011 -21.79183 -20.88251 -19.48830 -18.63179 -17.75257 -16.51576 -16.14284 -15.46764 -15.30172 -15.22602 -14.71165 -14.49742 -14.35113 -14.19775 -13.77364 -13.63764 -13.32103 -13.15037 -12.95844 -12.75393 -12.63866 -12.39519 -12.27667 -12.01867 -11.85755 -11.73787 -11.49645 -11.45337 -11.01303 -10.95975 -10.79613 -10.70893 -10.67892 -10.60132 -10.46483 -10.06709 -9.85977 -9.50266 -9.11740 -8.72402 -8.40135 -8.28372 -7.68163 -5.98932 -4.05209 2.42798 2.47794 3.29114 3.36217 3.38843 3.52856 3.83721 4.32867 4.38505 4.44183 4.56145 4.60372 4.87983 5.00878 5.04863 5.05308 5.10373 5.22267 5.26599 5.31251 5.34561 5.46528 5.49573 5.62527 5.65491 5.67061 5.72189 5.78939 5.82192 5.90301 5.99942 6.05606 6.09495 6.16576 6.28754 6.37628 6.48377 6.68958 6.73122 6.89774 6.95157 6.98011 7.19967 7.24968 7.38701 7.62898 7.73451 7.79970 8.06820 8.15982 8.46386 8.98809 9.59130 11.07016 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.022433 B = 0.002611 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.856274 B =10722.144960 C =10919.680110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.211 3.789 3 C -0.026 4.026 4 C -0.080 4.080 5 H 0.088 0.912 6 C -0.121 4.121 7 C -0.116 4.116 8 C 0.050 3.950 9 N -0.533 5.533 10 C 0.058 3.942 11 C 0.020 3.980 12 N -0.535 5.535 13 C 0.062 3.938 14 C -0.118 4.118 15 C -0.111 4.111 16 C 0.055 3.945 17 H 0.034 0.966 18 C -0.515 4.515 19 H 0.052 0.948 20 C 0.063 3.937 21 N -0.888 5.888 22 Si 0.890 3.110 23 H -0.282 1.282 24 H -0.286 1.286 25 H -0.275 1.275 26 C 0.069 3.931 27 C 0.056 3.944 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.039 0.961 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.027 0.973 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.021 0.979 42 H 0.061 0.939 43 H 0.046 0.954 44 H 0.090 0.910 45 H 0.029 0.971 46 H 0.260 0.740 47 H 0.017 0.983 48 H 0.056 0.944 49 H 0.079 0.921 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.230 4.299 -0.834 18.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.106 4.106 3 C -0.066 4.066 4 C -0.100 4.100 5 H 0.106 0.894 6 C -0.158 4.158 7 C -0.153 4.153 8 C -0.078 4.078 9 N -0.256 5.256 10 C -0.070 4.070 11 C -0.110 4.110 12 N -0.260 5.260 13 C -0.066 4.066 14 C -0.155 4.155 15 C -0.149 4.149 16 C 0.036 3.964 17 H 0.052 0.948 18 C -0.554 4.554 19 H 0.071 0.929 20 C -0.138 4.138 21 N -0.527 5.527 22 Si 0.718 3.282 23 H -0.208 1.208 24 H -0.212 1.212 25 H -0.200 1.200 26 C -0.058 4.058 27 C -0.072 4.072 28 H 0.130 0.870 29 H 0.127 0.873 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.057 0.943 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.045 0.955 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.039 0.961 42 H 0.079 0.921 43 H 0.064 0.936 44 H 0.109 0.891 45 H 0.047 0.953 46 H 0.070 0.930 47 H 0.035 0.965 48 H 0.075 0.925 49 H 0.097 0.903 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -19.853 4.935 -0.162 20.458 hybrid contribution 1.225 -1.905 -1.440 2.684 sum -18.628 3.030 -1.601 18.941 Atomic orbital electron populations 1.81240 1.13101 1.08987 1.08610 1.29168 0.95284 0.93093 0.93089 1.19392 0.81670 1.05694 0.99856 1.21171 0.96080 1.00432 0.92315 0.89380 1.21712 1.00495 0.98072 0.95542 1.21565 0.95202 1.02068 0.96505 1.22143 0.95663 0.92872 0.97111 1.62216 1.14155 1.41800 1.07443 1.22260 0.84514 0.97385 1.02792 1.22743 0.90045 0.99187 0.98998 1.61977 1.03700 1.08596 1.51678 1.22075 0.97788 0.93681 0.93072 1.21676 0.93668 0.99192 1.01012 1.21653 1.01641 0.93627 0.97957 1.18660 0.87391 0.93958 0.96357 0.94782 1.21139 0.91294 0.97150 1.45799 0.92936 1.24934 0.97758 0.95991 0.95160 1.69889 1.07940 1.26900 1.47924 0.86637 0.79523 0.83726 0.78342 1.20790 1.21224 1.19998 1.22299 0.97172 0.89196 0.97106 1.22106 0.93131 1.00839 0.91101 0.86998 0.87283 0.91630 0.92075 0.91457 0.91119 0.94317 0.90438 0.89708 0.90488 0.95520 0.91365 0.92152 0.96104 0.92059 0.93564 0.89135 0.95256 0.93045 0.96491 0.92505 0.90274 0.93824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.04 18.54 42.15 0.78 -4.26 16 2 C 0.21 1.71 14.45 -20.76 -0.30 1.41 16 3 C -0.03 -0.12 5.19 -29.52 -0.15 -0.27 16 4 C -0.08 -0.49 2.33 -90.54 -0.21 -0.70 16 5 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 6 C -0.12 -0.83 5.05 -26.61 -0.13 -0.96 16 7 C -0.12 -0.87 6.09 -26.66 -0.16 -1.03 16 8 C 0.05 0.45 5.05 -3.83 -0.02 0.43 16 9 N -0.53 -5.03 4.86 -234.67 -1.14 -6.17 16 10 C 0.06 0.66 5.29 -3.82 -0.02 0.64 16 11 C 0.02 0.27 4.26 -3.82 -0.02 0.26 16 12 N -0.53 -9.21 4.66 -234.68 -1.09 -10.31 16 13 C 0.06 1.01 5.29 -3.84 -0.02 0.99 16 14 C -0.12 -2.21 6.09 -26.65 -0.16 -2.37 16 15 C -0.11 -2.56 5.03 -26.61 -0.13 -2.69 16 16 C 0.06 1.35 2.26 -91.69 -0.21 1.14 16 17 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 18 C -0.52 -13.88 8.56 -34.44 -0.29 -14.18 16 19 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 20 C 0.06 1.72 5.31 -17.82 -0.09 1.62 16 21 N -0.89 -25.00 11.36 55.43 0.63 -24.37 16 22 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 26 C 0.07 1.42 4.68 -3.83 -0.02 1.40 16 27 C 0.06 0.43 4.12 -3.84 -0.02 0.41 16 28 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.45 7.47 -51.93 -0.39 0.06 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.04 0.37 6.76 -51.93 -0.35 0.02 16 35 H 0.08 0.72 8.06 -51.93 -0.42 0.30 16 36 H 0.08 1.03 8.06 -51.93 -0.42 0.61 16 37 H 0.08 0.86 6.43 -51.93 -0.33 0.53 16 38 H 0.03 0.35 6.49 -51.93 -0.34 0.01 16 39 H 0.07 0.94 6.53 -51.93 -0.34 0.60 16 40 H 0.06 0.85 6.21 -51.93 -0.32 0.52 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.09 2.35 6.16 -51.93 -0.32 2.03 16 45 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.06 1.16 8.02 -51.93 -0.42 0.75 16 49 H 0.08 0.56 8.12 -51.93 -0.42 0.14 16 50 H 0.04 0.35 6.61 -51.93 -0.34 0.01 16 LS Contribution 377.99 15.07 5.70 5.70 Total: -1.00 -29.59 377.99 -11.13 -40.72 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -9.02 Total: -3.35 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -1.96 Total: -13.91 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: -0.82 Total: -45.11 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.59 -11.13 -40.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595620003.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.837 kcal (2) G-P(sol) polarization free energy of solvation -29.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds