Wall clock time and date at job start Tue Mar 31 2020 08:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47527 * 59.02700 * 3 2 1 5 5 H 1.09010 * 109.49864 * 304.92019 * 4 3 2 6 6 C 1.53113 * 109.50604 * 64.99266 * 4 3 2 7 7 C 1.53116 * 109.16225 * 177.63774 * 6 4 3 8 8 C 1.53037 * 109.28022 * 302.34815 * 7 6 4 9 9 N 1.46852 * 109.52148 * 59.17688 * 8 7 6 10 10 C 1.46896 * 111.00016 * 174.16290 * 9 8 7 11 11 C 1.52993 * 109.47372 * 66.04461 * 10 9 8 12 12 N 1.46906 * 109.47378 * 180.02562 * 11 10 9 13 13 C 1.46843 * 110.99752 * 66.04836 * 12 11 10 14 14 C 1.53037 * 109.52380 * 185.83754 * 13 12 11 15 15 C 1.53120 * 109.28005 * 300.82188 * 14 13 12 16 16 C 1.53123 * 109.15662 * 57.65176 * 15 14 13 17 17 H 1.08995 * 109.50687 * 62.29115 * 16 15 14 18 18 C 1.50700 * 109.49905 * 182.36497 * 16 15 14 19 19 H 1.08008 * 119.99952 * 119.99838 * 18 16 15 20 20 C 1.37874 * 120.00157 * 299.99825 * 18 16 15 21 21 N 1.31514 * 120.00129 * 0.02562 * 20 18 16 22 22 Si 1.86810 * 120.00195 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46945 * 90.00145 * 22 20 18 24 24 H 1.48498 * 109.47233 * 210.00475 * 22 20 18 25 25 H 1.48502 * 109.46902 * 330.00350 * 22 20 18 26 26 C 1.46851 * 110.99829 * 190.25764 * 12 11 10 27 27 C 1.46848 * 111.19993 * 298.25957 * 9 8 7 28 28 H 1.08994 * 109.47385 * 299.02160 * 3 2 1 29 29 H 1.09002 * 109.46917 * 179.02211 * 3 2 1 30 30 H 1.09004 * 109.52047 * 57.73124 * 6 4 3 31 31 H 1.09000 * 109.57546 * 297.57799 * 6 4 3 32 32 H 1.08996 * 109.50682 * 182.40804 * 7 6 4 33 33 H 1.09005 * 109.53835 * 62.30772 * 7 6 4 34 34 H 1.09003 * 109.46214 * 299.16272 * 8 7 6 35 35 H 1.08991 * 109.46417 * 179.19264 * 8 7 6 36 36 H 1.09004 * 109.47041 * 306.04675 * 10 9 8 37 37 H 1.09004 * 109.47535 * 186.04715 * 10 9 8 38 38 H 1.09004 * 109.46862 * 60.00105 * 11 10 9 39 39 H 1.09000 * 109.47250 * 300.00128 * 11 10 9 40 40 H 1.09002 * 109.46627 * 305.85583 * 13 12 11 41 41 H 1.09004 * 109.46436 * 65.83473 * 13 12 11 42 42 H 1.09005 * 109.50037 * 60.76071 * 14 13 12 43 43 H 1.09000 * 109.50287 * 180.83957 * 14 13 12 44 44 H 1.08994 * 109.52195 * 177.55396 * 15 14 13 45 45 H 1.09001 * 109.52346 * 297.74567 * 15 14 13 46 46 H 0.97002 * 119.99977 * 180.02562 * 21 20 18 47 47 H 1.08998 * 109.46520 * 294.17463 * 26 12 11 48 48 H 1.08993 * 109.46107 * 54.14758 * 26 12 11 49 49 H 1.08997 * 109.46120 * 181.76042 * 27 9 8 50 50 H 1.09001 * 109.45925 * 301.73102 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1184 -0.7415 -1.2368 5 1 2.6856 -1.7415 -1.2655 6 6 2.7133 0.0271 -2.4976 7 6 3.2782 -0.6903 -3.7267 8 6 4.7991 -0.7968 -3.5951 9 7 5.1352 -1.5407 -2.3744 10 6 6.5815 -1.7824 -2.2865 11 6 7.3117 -0.4493 -2.1129 12 7 8.7581 -0.6909 -2.0257 13 6 9.2818 -1.2134 -3.2942 14 6 10.7554 -1.5893 -3.1231 15 6 11.5466 -0.3504 -2.6944 16 6 10.9506 0.2023 -1.3968 17 1 11.0459 -0.5422 -0.6064 18 6 11.6869 1.4555 -0.9988 19 1 11.1530 2.3901 -0.9092 20 6 13.0420 1.4091 -0.7490 21 7 13.6922 0.2712 -0.8586 22 14 13.9548 2.9627 -0.2564 23 1 13.9388 3.0984 1.2223 24 1 15.3597 2.8830 -0.7310 25 1 13.2916 4.1418 -0.8689 26 6 9.4714 0.5263 -1.6179 27 6 4.6440 -0.8465 -1.1772 28 1 2.9716 -0.4977 0.8986 29 1 2.9708 1.0284 -0.0175 30 1 3.1134 1.0400 -2.4511 31 1 1.6263 0.0677 -2.5671 32 1 3.0294 -0.1247 -4.6246 33 1 2.8480 -1.6896 -3.7953 34 1 5.2299 0.2031 -3.5412 35 1 5.2030 -1.3198 -4.4619 36 1 6.9248 -2.2685 -3.1998 37 1 6.7912 -2.4255 -1.4318 38 1 6.9684 0.0368 -1.1997 39 1 7.1021 0.1938 -2.9677 40 1 8.7132 -2.0966 -3.5856 41 1 9.1891 -0.4505 -4.0672 42 1 10.8476 -2.3620 -2.3599 43 1 11.1478 -1.9631 -4.0688 44 1 12.5889 -0.6230 -2.5293 45 1 11.4868 0.4081 -3.4749 46 1 14.6456 0.2384 -0.6825 47 1 9.3777 1.2810 -2.3988 48 1 9.0405 0.9066 -0.6918 49 1 4.9352 -1.4056 -0.2881 50 1 5.0754 0.1536 -1.1348 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595620004.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:32:29 Heat of formation + Delta-G solvation = 12.044391 kcal Electronic energy + Delta-G solvation = -25492.296618 eV Core-core repulsion = 22132.251168 eV Total energy + Delta-G solvation = -3360.045450 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.88889 -38.22726 -36.99825 -34.99709 -33.47584 -32.44995 -31.50758 -29.96005 -28.18902 -27.54084 -25.02686 -24.72550 -22.79183 -22.31840 -21.80536 -20.86581 -19.48582 -18.63390 -17.73217 -16.51743 -16.14247 -15.41559 -15.30390 -15.27240 -14.62599 -14.49083 -14.39407 -14.25058 -13.78078 -13.51973 -13.38505 -13.15433 -12.89971 -12.84649 -12.54483 -12.42983 -12.27236 -11.99275 -11.85794 -11.75186 -11.49672 -11.45656 -11.01171 -10.97260 -10.79796 -10.71778 -10.66839 -10.55547 -10.47154 -10.08030 -9.85928 -9.50133 -9.11375 -8.72191 -8.40403 -8.28617 -7.68748 -5.98935 -4.05298 2.44951 2.50061 3.29221 3.36187 3.38681 3.54565 3.84624 4.33903 4.38933 4.44877 4.56195 4.60942 4.86835 4.99601 5.06714 5.07892 5.11270 5.22468 5.28132 5.31331 5.36414 5.46081 5.49738 5.62945 5.64465 5.66821 5.72170 5.78958 5.81454 5.89126 5.99463 6.05574 6.08472 6.17571 6.28576 6.37839 6.48166 6.69099 6.73301 6.89401 6.95755 6.97431 7.20034 7.27210 7.38785 7.62672 7.73324 7.79756 8.06673 8.16113 8.46371 8.98692 9.59099 11.06918 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.020010 B = 0.002733 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.966532 B =10242.719144 C =11163.602298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.212 3.788 3 C -0.026 4.026 4 C -0.080 4.080 5 H 0.088 0.912 6 C -0.121 4.121 7 C -0.115 4.115 8 C 0.050 3.950 9 N -0.533 5.533 10 C 0.058 3.942 11 C 0.020 3.980 12 N -0.534 5.534 13 C 0.061 3.939 14 C -0.117 4.117 15 C -0.111 4.111 16 C 0.055 3.945 17 H 0.034 0.966 18 C -0.515 4.515 19 H 0.052 0.948 20 C 0.063 3.937 21 N -0.888 5.888 22 Si 0.889 3.111 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.276 1.276 26 C 0.069 3.931 27 C 0.057 3.943 28 H 0.113 0.887 29 H 0.109 0.891 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.037 0.963 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.024 0.976 40 H 0.060 0.940 41 H 0.020 0.980 42 H 0.061 0.939 43 H 0.045 0.955 44 H 0.091 0.909 45 H 0.028 0.972 46 H 0.260 0.740 47 H 0.016 0.984 48 H 0.057 0.943 49 H 0.083 0.917 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.772 -3.309 -3.596 18.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.106 4.106 3 C -0.066 4.066 4 C -0.100 4.100 5 H 0.106 0.894 6 C -0.158 4.158 7 C -0.153 4.153 8 C -0.078 4.078 9 N -0.256 5.256 10 C -0.069 4.069 11 C -0.110 4.110 12 N -0.259 5.259 13 C -0.067 4.067 14 C -0.155 4.155 15 C -0.149 4.149 16 C 0.036 3.964 17 H 0.052 0.948 18 C -0.554 4.554 19 H 0.071 0.929 20 C -0.138 4.138 21 N -0.527 5.527 22 Si 0.718 3.282 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.201 1.201 26 C -0.058 4.058 27 C -0.072 4.072 28 H 0.131 0.869 29 H 0.128 0.872 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.056 0.944 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.042 0.958 40 H 0.078 0.922 41 H 0.039 0.961 42 H 0.080 0.920 43 H 0.064 0.936 44 H 0.109 0.891 45 H 0.047 0.953 46 H 0.070 0.930 47 H 0.035 0.965 48 H 0.076 0.924 49 H 0.101 0.899 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -19.455 -4.194 -3.248 20.165 hybrid contribution 1.306 2.361 -0.371 2.723 sum -18.149 -1.833 -3.619 18.597 Atomic orbital electron populations 1.81242 1.13115 1.08882 1.08797 1.29181 0.95298 0.93111 0.93005 1.19393 0.81624 1.04365 1.01252 1.21174 0.96149 1.00064 0.92625 0.89380 1.21711 1.00488 0.99184 0.94436 1.21559 0.95126 1.01185 0.97435 1.22134 0.95758 0.96856 0.93075 1.62213 1.14152 1.47369 1.01867 1.22259 0.84497 0.96754 1.03433 1.22748 0.90369 0.97671 1.00211 1.61995 1.01204 1.32274 1.30404 1.22080 0.97000 0.97878 0.89702 1.21675 0.93544 1.00468 0.99842 1.21654 1.02001 0.93583 0.97660 1.18657 0.87322 0.96321 0.94059 0.94765 1.21139 0.93316 0.94720 1.46206 0.92936 1.24931 0.97622 0.95901 0.95368 1.69887 1.08836 1.24667 1.49268 0.86640 0.79096 0.83727 0.78780 1.20687 1.21264 1.20058 1.22298 0.97593 0.88111 0.97778 1.22117 0.93025 0.98032 0.93984 0.86866 0.87246 0.91644 0.92070 0.91556 0.91102 0.94433 0.90793 0.90615 0.89572 0.91121 0.95761 0.92196 0.96149 0.92035 0.93583 0.89085 0.95280 0.93043 0.96533 0.92445 0.89872 0.93777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.10 18.54 42.16 0.78 -4.32 16 2 C 0.21 1.73 14.45 -20.76 -0.30 1.43 16 3 C -0.03 -0.12 5.19 -29.52 -0.15 -0.28 16 4 C -0.08 -0.50 2.32 -90.54 -0.21 -0.71 16 5 H 0.09 0.61 8.14 -51.92 -0.42 0.19 16 6 C -0.12 -0.83 5.05 -26.61 -0.13 -0.96 16 7 C -0.12 -0.86 6.09 -26.65 -0.16 -1.03 16 8 C 0.05 0.44 5.05 -3.83 -0.02 0.42 16 9 N -0.53 -5.03 4.86 -234.68 -1.14 -6.17 16 10 C 0.06 0.66 5.29 -3.83 -0.02 0.64 16 11 C 0.02 0.27 4.26 -3.82 -0.02 0.25 16 12 N -0.53 -9.20 4.66 -234.67 -1.09 -10.30 16 13 C 0.06 1.02 5.29 -3.84 -0.02 1.00 16 14 C -0.12 -2.22 6.09 -26.65 -0.16 -2.38 16 15 C -0.11 -2.57 5.02 -26.61 -0.13 -2.70 16 16 C 0.06 1.35 2.26 -91.69 -0.21 1.14 16 17 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 18 C -0.52 -13.86 8.57 -34.44 -0.29 -14.15 16 19 H 0.05 1.40 7.75 -52.48 -0.41 0.99 16 20 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 21 N -0.89 -24.97 11.35 55.43 0.63 -24.34 16 22 Si 0.89 20.94 29.54 -169.99 -5.02 15.91 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 C 0.07 1.42 4.68 -3.83 -0.02 1.40 16 27 C 0.06 0.43 4.12 -3.83 -0.02 0.42 16 28 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.45 7.47 -51.93 -0.39 0.06 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.04 0.36 6.76 -51.93 -0.35 0.01 16 35 H 0.07 0.67 8.06 -51.93 -0.42 0.25 16 36 H 0.08 0.88 6.36 -51.93 -0.33 0.55 16 37 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.07 0.92 6.35 -51.93 -0.33 0.59 16 39 H 0.02 0.33 6.66 -51.93 -0.35 -0.01 16 40 H 0.06 0.86 6.22 -51.93 -0.32 0.54 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.09 2.37 6.15 -51.93 -0.32 2.05 16 45 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 48 H 0.06 1.16 8.01 -51.93 -0.42 0.74 16 49 H 0.08 0.60 8.12 -51.93 -0.42 0.18 16 50 H 0.04 0.35 6.61 -51.93 -0.34 0.01 16 LS Contribution 377.98 15.07 5.70 5.70 Total: -1.00 -29.58 377.98 -11.13 -40.72 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -9.02 Total: -3.32 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: -1.96 Total: -13.88 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: -0.82 Total: -45.12 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.58 -11.13 -40.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595620004.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.760 kcal (2) G-P(sol) polarization free energy of solvation -29.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds