Wall clock time and date at job start Tue Mar 31 2020 08:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46978 * 120.00428 * 2 1 3 5 5 C 1.53006 * 109.46626 * 174.99863 * 4 2 1 6 6 N 1.46500 * 109.46998 * 179.97438 * 5 4 2 7 7 C 1.46504 * 119.99881 * 270.00232 * 6 5 4 8 8 C 1.50700 * 109.47207 * 89.99965 * 7 6 5 9 9 H 1.07995 * 120.00038 * 359.97438 * 8 7 6 10 10 C 1.37876 * 119.99575 * 180.02562 * 8 7 6 11 11 N 1.31509 * 120.00609 * 359.97438 * 10 8 7 12 12 Si 1.86810 * 119.99620 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47197 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47241 * 120.00083 * 12 10 8 15 15 H 1.48504 * 109.46905 * 239.99769 * 12 10 8 16 16 C 1.38539 * 119.99915 * 89.99832 * 6 5 4 17 17 C 1.39661 * 120.53251 * 4.71849 * 16 6 5 18 18 C 1.38079 * 118.33082 * 179.77644 * 17 16 6 19 19 C 1.50707 * 120.39700 * 180.24377 * 18 17 16 20 20 C 1.52999 * 109.46872 * 75.26206 * 19 18 17 21 21 C 1.53001 * 109.46586 * 195.26421 * 19 18 17 22 22 C 1.52996 * 109.47169 * 315.25852 * 19 18 17 23 23 N 1.32576 * 119.20227 * 0.50348 * 18 17 16 24 24 C 1.31757 * 121.01022 * 359.74141 * 23 18 17 25 25 N 1.31770 * 121.83785 * 359.97438 * 24 23 18 26 26 H 1.09007 * 109.46638 * 299.99558 * 1 2 3 27 27 H 1.09001 * 109.47356 * 59.99573 * 1 2 3 28 28 H 1.09000 * 109.47210 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46722 * 239.99965 * 2 1 3 30 30 H 1.09001 * 109.47333 * 300.00442 * 3 2 1 31 31 H 1.09002 * 109.47330 * 60.00337 * 3 2 1 32 32 H 1.09000 * 109.47130 * 180.02562 * 3 2 1 33 33 H 1.08993 * 109.47839 * 54.99933 * 4 2 1 34 34 H 1.09000 * 109.47160 * 294.99494 * 4 2 1 35 35 H 1.09000 * 109.47050 * 299.99699 * 5 4 2 36 36 H 1.09001 * 109.46801 * 59.99811 * 5 4 2 37 37 H 1.09003 * 109.46763 * 209.99449 * 7 6 5 38 38 H 1.08995 * 109.47081 * 329.99868 * 7 6 5 39 39 H 0.96999 * 120.00338 * 180.02562 * 11 10 8 40 40 H 1.07999 * 120.83273 * 0.02562 * 17 16 6 41 41 H 1.08996 * 109.46803 * 60.00029 * 20 19 18 42 42 H 1.09005 * 109.46446 * 179.97438 * 20 19 18 43 43 H 1.08993 * 109.47165 * 299.99224 * 20 19 18 44 44 H 1.08994 * 109.47380 * 60.00441 * 21 19 18 45 45 H 1.09009 * 109.46686 * 180.02562 * 21 19 18 46 46 H 1.08999 * 109.46936 * 299.99567 * 21 19 18 47 47 H 1.09001 * 109.46801 * 60.00315 * 22 19 18 48 48 H 1.09001 * 109.47396 * 179.97438 * 22 19 18 49 49 H 1.09001 * 109.47346 * 300.00634 * 22 19 18 50 50 H 1.08007 * 119.08217 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.8311 1.1878 6 7 4.0533 -1.5213 2.3842 7 6 4.4018 -0.7531 3.5820 8 6 3.1868 -0.6182 4.4634 9 1 2.2489 -1.0601 4.1613 10 6 3.2726 0.0702 5.6549 11 7 4.4147 0.6088 6.0225 12 14 1.7668 0.2368 6.7478 13 1 0.6155 -0.4537 6.1129 14 1 2.0448 -0.3777 8.0707 15 1 1.4427 1.6748 6.9282 16 6 4.1856 -2.9003 2.3828 17 6 3.9509 -3.6345 1.2182 18 6 4.1005 -5.0063 1.2670 19 6 3.8643 -5.8434 0.0362 20 6 5.0485 -5.6893 -0.9203 21 6 3.7214 -7.3126 0.4386 22 6 2.5832 -5.3781 -0.6589 23 7 4.4495 -5.5786 2.4108 24 6 4.6589 -4.8584 3.4940 25 7 4.5331 -3.5467 3.4917 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.6767 1.9563 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6055 -1.7198 1.2951 34 1 1.7517 -0.1584 2.1369 35 1 3.8532 -1.3940 0.3000 36 1 3.9994 0.1675 1.1419 37 1 5.1912 -1.2697 4.1280 38 1 4.7504 0.2374 3.2898 39 1 4.4751 1.0928 6.8609 40 1 3.6635 -3.1412 0.3014 41 1 5.9610 -6.0209 -0.4250 42 1 4.8777 -6.2952 -1.8102 43 1 5.1502 -4.6427 -1.2069 44 1 2.8778 -7.4223 1.1200 45 1 3.5509 -7.9182 -0.4516 46 1 4.6340 -7.6441 0.9339 47 1 2.6851 -4.3314 -0.9455 48 1 2.4126 -5.9832 -1.5493 49 1 1.7397 -5.4878 0.0226 50 1 4.9425 -5.3570 4.4092 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596167120.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:44:52 Heat of formation + Delta-G solvation = 21.544462 kcal Electronic energy + Delta-G solvation = -26344.524214 eV Core-core repulsion = 22984.890718 eV Total energy + Delta-G solvation = -3359.633496 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.50911 -37.68671 -36.74437 -35.29972 -32.75640 -31.80283 -30.49111 -29.07238 -27.34523 -27.24647 -27.03304 -26.56742 -23.94780 -23.75158 -22.52549 -21.19341 -19.74767 -18.94536 -16.88690 -16.64821 -16.35832 -15.21635 -14.95247 -14.83679 -14.61777 -14.47152 -13.99115 -13.88389 -13.71667 -13.60063 -13.47852 -12.80150 -12.59371 -12.36705 -12.25622 -12.06107 -12.05712 -11.73087 -11.62537 -11.33201 -11.23833 -11.11907 -11.05905 -10.96372 -10.92344 -10.71765 -10.60181 -10.49883 -10.30823 -10.18193 -10.03898 -9.70025 -9.41741 -9.07240 -8.44055 -8.35127 -7.06710 -6.02501 -4.07107 1.69443 2.08951 3.28221 3.36446 3.39898 3.69803 4.40508 4.43046 4.53685 4.77199 5.02627 5.04310 5.07765 5.11804 5.13168 5.19784 5.29527 5.35803 5.53589 5.58428 5.64257 5.69284 5.72858 5.78057 5.78772 5.82056 5.87689 5.88463 5.92547 5.95918 5.98512 6.06460 6.11926 6.16604 6.22589 6.26149 6.30531 6.34043 6.38345 6.49093 6.56810 6.76288 6.88621 7.10514 7.42038 7.63352 7.86915 8.14651 8.23693 8.27983 8.94433 9.06934 9.56745 11.04006 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.010957 B = 0.005214 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.764678 B = 5369.113561 C = 7010.797724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.149 4.149 4 C -0.133 4.133 5 C 0.127 3.873 6 N -0.574 5.574 7 C 0.253 3.747 8 C -0.514 4.514 9 H 0.057 0.943 10 C 0.062 3.938 11 N -0.895 5.895 12 Si 0.892 3.108 13 H -0.275 1.275 14 H -0.283 1.283 15 H -0.285 1.285 16 C 0.449 3.551 17 C -0.306 4.306 18 C 0.203 3.797 19 C -0.018 4.018 20 C -0.134 4.134 21 C -0.124 4.124 22 C -0.138 4.138 23 N -0.579 5.579 24 C 0.330 3.670 25 N -0.556 5.556 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.047 0.953 38 H 0.029 0.971 39 H 0.261 0.739 40 H 0.131 0.869 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.047 0.953 46 H 0.065 0.935 47 H 0.059 0.941 48 H 0.059 0.941 49 H 0.056 0.944 50 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.740 -7.257 -15.475 17.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.172 4.172 5 C 0.003 3.997 6 N -0.281 5.281 7 C 0.133 3.867 8 C -0.553 4.553 9 H 0.075 0.925 10 C -0.139 4.139 11 N -0.535 5.535 12 Si 0.721 3.279 13 H -0.200 1.200 14 H -0.209 1.209 15 H -0.211 1.211 16 C 0.204 3.796 17 C -0.336 4.336 18 C 0.061 3.939 19 C -0.019 4.019 20 C -0.192 4.192 21 C -0.181 4.181 22 C -0.195 4.195 23 N -0.300 5.300 24 C 0.040 3.960 25 N -0.280 5.280 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.065 0.935 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.149 0.851 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.084 0.916 47 H 0.078 0.922 48 H 0.078 0.922 49 H 0.075 0.925 50 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -2.407 -7.298 -14.486 16.398 hybrid contribution -1.108 0.702 0.196 1.327 sum -3.515 -6.596 -14.290 16.127 Atomic orbital electron populations 1.21817 0.95534 1.01437 1.01459 1.21061 0.95554 0.96397 0.98164 1.21893 1.01215 0.95988 1.01516 1.22125 0.95723 1.00809 0.98535 1.21495 0.94213 0.97163 0.86778 1.47180 1.64039 1.01414 1.15474 1.19353 0.96849 0.90071 0.80385 1.21419 0.96246 1.33444 1.04156 0.92510 1.24886 0.95956 0.95625 0.97477 1.69930 1.24390 1.36168 1.23004 0.86532 0.83132 0.77541 0.80743 1.19951 1.20932 1.21101 1.18587 0.86491 0.86186 0.88327 1.21828 1.16592 0.95447 0.99692 1.20940 0.89602 0.90405 0.92949 1.19450 0.96048 0.95231 0.91165 1.21831 0.97210 1.01917 0.98251 1.21640 1.02958 0.93299 1.00217 1.21897 0.96298 1.01356 0.99997 1.68128 1.21013 1.41159 0.99725 1.24557 0.89771 0.85958 0.95757 1.68161 1.21269 1.10541 1.28009 0.92573 0.93146 0.92989 0.91786 0.93332 0.92275 0.92460 0.92425 0.89754 0.91997 0.90327 0.93508 0.95348 0.92883 0.85139 0.92429 0.92106 0.92470 0.92641 0.93352 0.91605 0.92230 0.92162 0.92482 0.79938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.19 37.16 0.34 -1.34 16 2 C -0.09 -1.15 2.92 -90.62 -0.26 -1.41 16 3 C -0.15 -1.79 8.95 37.15 0.33 -1.46 16 4 C -0.13 -2.10 5.01 -26.73 -0.13 -2.24 16 5 C 0.13 2.10 5.07 -4.04 -0.02 2.08 16 6 N -0.57 -11.94 2.56 -175.02 -0.45 -12.39 16 7 C 0.25 6.35 5.20 -5.19 -0.03 6.32 16 8 C -0.51 -13.97 8.92 -34.44 -0.31 -14.27 16 9 H 0.06 1.58 7.42 -52.49 -0.39 1.19 16 10 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 11 N -0.90 -26.02 13.29 55.43 0.74 -25.28 16 12 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 13 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 C 0.45 9.20 7.38 -154.78 -1.14 8.06 16 17 C -0.31 -5.22 8.37 -39.11 -0.33 -5.55 16 18 C 0.20 3.27 5.56 -82.33 -0.46 2.81 16 19 C -0.02 -0.22 0.88 -155.66 -0.14 -0.36 16 20 C -0.13 -1.44 8.42 37.16 0.31 -1.13 16 21 C -0.12 -1.44 7.83 37.16 0.29 -1.15 16 22 C -0.14 -1.49 8.09 37.16 0.30 -1.18 16 23 N -0.58 -10.08 9.19 -10.88 -0.10 -10.18 16 24 C 0.33 6.13 12.28 -92.21 -1.13 5.00 16 25 N -0.56 -12.14 9.32 -13.81 -0.13 -12.27 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.68 6.57 -51.93 -0.34 0.34 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.08 1.60 7.26 -51.93 -0.38 1.22 16 35 H 0.06 0.88 6.06 -51.93 -0.31 0.56 16 36 H 0.08 1.27 6.32 -51.93 -0.33 0.94 16 37 H 0.05 1.31 7.48 -51.93 -0.39 0.92 16 38 H 0.03 0.74 7.89 -51.93 -0.41 0.33 16 39 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.13 1.94 4.93 -52.49 -0.26 1.68 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 46 H 0.06 0.82 7.88 -51.93 -0.41 0.41 16 47 H 0.06 0.63 6.78 -51.93 -0.35 0.28 16 48 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.18 2.84 8.06 -52.48 -0.42 2.42 16 LS Contribution 393.66 15.07 5.93 5.93 Total: -1.00 -30.17 393.66 -10.54 -40.71 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -9.04 Total: 1.02 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -2.47 Total: -4.19 kcal Atomic # 7 Polarization: -60.18 SS G_CDS: 0.06 Total: -60.12 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.17 -10.54 -40.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596167120.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.257 kcal (2) G-P(sol) polarization free energy of solvation -30.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds