Wall clock time and date at job start Tue Mar 31 2020 08:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46733 * 2 1 4 4 C 1.52998 * 109.47404 * 305.15284 * 3 2 1 5 5 C 1.53000 * 109.47011 * 295.12471 * 4 3 2 6 6 C 1.53005 * 109.47001 * 65.15557 * 3 2 1 7 7 N 1.46902 * 109.47129 * 64.99875 * 6 3 2 8 8 C 1.46894 * 111.00104 * 66.04302 * 7 6 3 9 9 C 1.50698 * 109.47161 * 193.95240 * 8 7 6 10 10 H 1.08008 * 120.00003 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00431 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99741 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00368 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47045 * 0.02562 * 13 11 9 15 15 H 1.48495 * 109.47085 * 120.00159 * 13 11 9 16 16 H 1.48495 * 109.47018 * 240.00292 * 13 11 9 17 17 C 1.46898 * 110.99937 * 189.99988 * 7 6 3 18 18 C 1.50694 * 109.47282 * 169.99753 * 17 7 6 19 19 C 1.34561 * 126.58237 * 94.95714 * 18 17 7 20 20 N 1.34011 * 108.03125 * 180.02562 * 19 18 17 21 21 C 1.30908 * 109.30311 * 359.89642 * 20 19 18 22 22 N 1.34815 * 108.60691 * 0.20077 * 21 20 19 23 23 C 1.47006 * 111.17874 * 179.68911 * 22 21 20 24 24 C 1.54398 * 105.52748 * 17.14757 * 23 22 21 25 25 C 1.51568 * 141.44832 * 180.20404 * 21 20 19 26 26 H 1.09000 * 109.47186 * 185.68331 * 1 2 3 27 27 H 1.09003 * 109.47068 * 305.68013 * 1 2 3 28 28 H 1.08993 * 109.47446 * 65.68239 * 1 2 3 29 29 H 1.08998 * 109.46874 * 240.00280 * 2 1 3 30 30 H 1.08997 * 109.46840 * 120.00026 * 2 1 3 31 31 H 1.09008 * 109.46829 * 185.14986 * 3 2 1 32 32 H 1.08996 * 109.47124 * 55.13268 * 4 3 2 33 33 H 1.08999 * 109.46947 * 175.12716 * 4 3 2 34 34 H 1.08994 * 109.47248 * 305.89337 * 5 4 3 35 35 H 1.08995 * 109.46667 * 65.89378 * 5 4 3 36 36 H 1.08999 * 109.46709 * 185.88929 * 5 4 3 37 37 H 1.08999 * 109.47062 * 304.99665 * 6 3 2 38 38 H 1.09007 * 109.46893 * 184.99617 * 6 3 2 39 39 H 1.08998 * 109.47647 * 313.95500 * 8 7 6 40 40 H 1.08998 * 109.47096 * 73.95786 * 8 7 6 41 41 H 0.96999 * 119.99852 * 179.97438 * 12 11 9 42 42 H 1.09000 * 109.47253 * 49.99499 * 17 7 6 43 43 H 1.08998 * 109.47013 * 290.00202 * 17 7 6 44 44 H 1.08000 * 125.98366 * 0.02562 * 19 18 17 45 45 H 1.09004 * 110.23432 * 136.14083 * 23 22 21 46 46 H 1.08994 * 110.24188 * 258.02635 * 23 22 21 47 47 H 1.08996 * 110.96313 * 216.14344 * 24 23 22 48 48 H 1.09001 * 110.97945 * 92.37909 * 24 23 22 49 49 H 1.09000 * 110.47730 * 282.15967 * 25 21 20 50 50 H 1.09000 * 110.47534 * 44.77636 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4269 2.2002 -1.1794 5 6 1.9261 1.5916 -2.4914 6 6 1.6384 2.1254 1.3091 7 7 2.3227 1.4713 2.4324 8 6 3.7746 1.6820 2.3593 9 6 4.4680 0.7347 3.3041 10 1 3.8880 0.0446 3.8991 11 6 5.8427 0.7487 3.4090 12 7 6.5488 1.5893 2.6848 13 14 6.7022 -0.4262 4.5796 14 1 5.6900 -1.2628 5.2730 15 1 7.6259 -1.3008 3.8135 16 1 7.4739 0.3508 5.5825 17 6 1.7871 1.9374 3.7184 18 6 2.3307 1.0776 4.8303 19 6 3.4096 1.3380 5.5911 20 7 3.5566 0.3296 6.4614 21 6 2.6051 -0.5490 6.2704 22 7 1.8213 -0.1215 5.2603 23 6 0.7339 -1.0738 4.9922 24 6 0.6516 -1.9708 6.2462 25 6 2.0919 -1.8740 6.7979 26 1 -0.3633 -1.0226 0.1018 27 1 -0.3633 0.5994 0.8348 28 1 -0.3634 0.4232 -0.9364 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.1261 1.4439 -0.0923 32 1 0.3404 2.1253 -1.1341 33 1 1.7211 3.2486 -1.1301 34 1 3.0158 1.5714 -2.4911 35 1 1.5438 0.5756 -2.5891 36 1 1.5740 2.1944 -3.3285 37 1 0.5598 2.0457 1.4445 38 1 1.9234 3.1769 1.2726 39 1 4.1179 1.4964 1.3416 40 1 4.0071 2.7094 2.6394 41 1 7.5159 1.5994 2.7589 42 1 0.6993 1.8694 3.7052 43 1 2.0843 2.9733 3.8817 44 1 4.0456 2.2074 5.5139 45 1 -0.2063 -0.5414 4.8475 46 1 0.9662 -1.6735 4.1123 47 1 0.4057 -2.9976 5.9756 48 1 -0.0681 -1.5749 6.9627 49 1 2.7006 -2.6960 6.4212 50 1 2.0834 -1.8729 7.8879 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596994569.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:42:49 Heat of formation + Delta-G solvation = 71.843435 kcal Electronic energy + Delta-G solvation = -27183.518249 eV Core-core repulsion = 23826.065880 eV Total energy + Delta-G solvation = -3357.452369 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.74378 -38.14869 -36.12914 -35.13648 -32.36841 -31.31961 -30.82112 -29.17112 -27.67872 -27.43637 -26.44114 -23.97727 -23.56330 -22.68092 -21.66748 -20.71090 -19.75069 -18.79144 -18.34058 -16.68647 -16.11215 -15.42886 -15.18827 -15.04105 -14.32449 -14.27381 -13.89770 -13.73303 -13.40857 -13.25009 -12.99591 -12.78188 -12.72322 -12.63120 -12.23798 -11.86660 -11.74329 -11.70548 -11.58324 -11.49683 -11.41351 -11.06273 -10.97435 -10.88613 -10.80750 -10.54416 -10.39222 -10.05586 -9.89195 -9.86257 -9.50204 -9.08051 -8.92710 -8.66016 -8.27351 -7.27277 -7.01963 -5.86189 -3.78870 2.83846 3.43566 3.48173 3.57743 3.72181 4.08548 4.32856 4.64741 4.75126 4.84205 4.92556 5.07059 5.19202 5.27617 5.38905 5.47281 5.51035 5.52602 5.58914 5.60566 5.69142 5.70704 5.71329 5.84109 5.90415 5.93429 5.97911 6.04647 6.06588 6.07428 6.11998 6.20510 6.21802 6.27881 6.39227 6.46739 6.57469 6.64994 6.72033 6.85467 6.97805 7.25045 7.31008 7.40592 7.78996 7.87993 8.01182 8.15216 8.26033 8.64298 9.02898 9.24100 9.81271 11.24516 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.011576 B = 0.006254 C = 0.004660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.233548 B = 4476.052983 C = 6007.433218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.108 4.108 3 C -0.084 4.084 4 C -0.120 4.120 5 C -0.149 4.149 6 C 0.061 3.939 7 N -0.532 5.532 8 C 0.191 3.809 9 C -0.488 4.488 10 H 0.076 0.924 11 C 0.058 3.942 12 N -0.905 5.905 13 Si 0.887 3.113 14 H -0.263 1.263 15 H -0.296 1.296 16 H -0.287 1.287 17 C 0.143 3.857 18 C 0.031 3.969 19 C 0.040 3.960 20 N -0.484 5.484 21 C 0.155 3.845 22 N -0.468 5.468 23 C 0.111 3.889 24 C -0.129 4.129 25 C -0.035 4.035 26 H 0.042 0.958 27 H 0.053 0.947 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.046 0.954 37 H 0.058 0.942 38 H 0.020 0.980 39 H 0.033 0.967 40 H -0.011 1.011 41 H 0.256 0.744 42 H 0.054 0.946 43 H 0.044 0.956 44 H 0.164 0.836 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.092 0.908 48 H 0.080 0.920 49 H 0.086 0.914 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.538 -3.627 -1.024 15.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.146 4.146 3 C -0.102 4.102 4 C -0.158 4.158 5 C -0.207 4.207 6 C -0.067 4.067 7 N -0.257 5.257 8 C 0.066 3.934 9 C -0.527 4.527 10 H 0.094 0.906 11 C -0.142 4.142 12 N -0.546 5.546 13 Si 0.715 3.285 14 H -0.187 1.187 15 H -0.224 1.224 16 H -0.213 1.213 17 C 0.014 3.986 18 C -0.081 4.081 19 C -0.109 4.109 20 N -0.204 5.204 21 C -0.105 4.105 22 N -0.154 5.154 23 C -0.012 4.012 24 C -0.167 4.167 25 C -0.074 4.074 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.038 0.962 39 H 0.051 0.949 40 H 0.006 0.994 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.181 0.819 45 H 0.096 0.904 46 H 0.103 0.897 47 H 0.111 0.889 48 H 0.099 0.901 49 H 0.104 0.896 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.010 -4.103 -0.671 15.575 hybrid contribution 0.414 0.394 -0.211 0.609 sum -14.596 -3.710 -0.883 15.086 Atomic orbital electron populations 1.21832 0.97193 1.00504 1.00959 1.21372 0.94641 0.96520 1.02040 1.21209 1.01207 0.94971 0.92859 1.21600 1.00271 0.99235 0.94714 1.21766 1.01449 1.00610 0.96859 1.22078 0.97717 0.95144 0.91769 1.62212 1.07933 1.56536 0.99027 1.19838 0.80106 0.95379 0.98058 1.21505 0.90860 1.18587 1.21716 0.90628 1.24827 0.97501 0.95816 0.96061 1.69982 1.05986 1.37509 1.41086 0.86555 0.79604 0.81509 0.80791 1.18653 1.22362 1.21295 1.20133 0.96516 0.94340 0.87626 1.20265 0.99640 0.87564 1.00673 1.21632 0.95632 0.99119 0.94491 1.69769 1.21393 1.02534 1.26662 1.23809 0.93274 0.98628 0.94802 1.45947 1.24238 1.16552 1.28614 1.22108 0.89670 0.90413 0.98974 1.22682 0.97069 1.00435 0.96496 1.20467 0.94358 0.91298 1.01258 0.93858 0.92802 0.93419 0.93262 0.90337 0.90217 0.92145 0.92643 0.92661 0.92763 0.93520 0.92320 0.96160 0.94927 0.99362 0.93461 0.92726 0.93778 0.81906 0.90363 0.89749 0.88905 0.90105 0.89552 0.89539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.11 37.16 0.34 -1.51 16 2 C -0.11 -1.64 5.28 -26.73 -0.14 -1.78 16 3 C -0.08 -1.34 2.11 -90.62 -0.19 -1.53 16 4 C -0.12 -1.58 5.07 -26.73 -0.14 -1.71 16 5 C -0.15 -1.82 9.52 37.16 0.35 -1.46 16 6 C 0.06 1.03 4.22 -3.82 -0.02 1.01 16 7 N -0.53 -10.65 3.93 -237.52 -0.93 -11.58 16 8 C 0.19 4.75 4.60 -4.98 -0.02 4.73 16 9 C -0.49 -13.27 6.03 -34.44 -0.21 -13.48 16 10 H 0.08 2.08 4.64 -52.48 -0.24 1.84 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 12 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 13 Si 0.89 23.59 29.54 -169.99 -5.02 18.57 16 14 H -0.26 -7.07 7.11 56.52 0.40 -6.66 16 15 H -0.30 -7.87 7.11 56.52 0.40 -7.46 16 16 H -0.29 -7.73 7.11 56.52 0.40 -7.33 16 17 C 0.14 2.68 5.52 -4.98 -0.03 2.65 16 18 C 0.03 0.64 4.52 -81.49 -0.37 0.27 16 19 C 0.04 0.92 8.52 -17.90 -0.15 0.76 16 20 N -0.48 -11.10 11.25 -10.56 -0.12 -11.22 16 21 C 0.16 3.02 8.38 -154.86 -1.30 1.72 16 22 N -0.47 -8.55 3.46 -107.73 -0.37 -8.92 16 23 C 0.11 1.45 7.78 -3.03 -0.02 1.43 16 24 C -0.13 -1.29 7.17 -25.19 -0.18 -1.47 16 25 C -0.03 -0.47 6.86 -26.65 -0.18 -0.65 16 26 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.68 6.23 -51.93 -0.32 0.36 16 28 H 0.05 0.54 6.58 -51.93 -0.34 0.20 16 29 H 0.05 0.72 6.96 -51.93 -0.36 0.36 16 30 H 0.08 1.42 7.62 -51.93 -0.40 1.03 16 31 H 0.08 1.53 6.12 -51.92 -0.32 1.22 16 32 H 0.06 0.72 6.19 -51.93 -0.32 0.40 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.63 6.98 -51.93 -0.36 0.27 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.88 6.03 -51.93 -0.31 0.57 16 38 H 0.02 0.35 8.12 -51.92 -0.42 -0.07 16 39 H 0.03 0.88 5.91 -51.93 -0.31 0.57 16 40 H -0.01 -0.31 7.99 -51.93 -0.41 -0.72 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.05 0.89 7.93 -51.93 -0.41 0.48 16 43 H 0.04 0.84 8.01 -51.93 -0.42 0.42 16 44 H 0.16 3.86 8.03 -52.49 -0.42 3.44 16 45 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 47 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 50 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 375.97 15.07 5.67 5.67 Total: -1.00 -32.47 375.97 -11.13 -43.61 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -8.74 Total: -0.18 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -2.35 Total: -9.45 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: -0.69 Total: -58.21 kcal Atomic # 14 Polarization: 23.59 SS G_CDS: -5.02 Total: 18.57 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.47 -11.13 -43.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596994569.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.450 kcal (2) G-P(sol) polarization free energy of solvation -32.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds