Wall clock time and date at job start Tue Mar 31 2020 08:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40081 * 126.04198 * 2 1 4 4 C 1.30832 * 108.20884 * 180.26640 * 3 2 1 5 5 C 1.39871 * 108.20304 * 359.97438 * 4 3 2 6 6 C 1.50695 * 126.03884 * 180.02562 * 5 4 3 7 7 C 1.53003 * 117.50396 * 8.62667 * 6 5 4 8 8 C 1.52999 * 117.50050 * 300.00133 * 6 5 4 9 9 C 1.34949 * 126.03633 * 180.30967 * 2 1 3 10 10 C 1.50705 * 126.12524 * 359.75630 * 9 2 1 11 11 N 1.46902 * 109.46909 * 89.97291 * 10 9 2 12 12 C 1.46896 * 110.99576 * 189.99876 * 11 10 9 13 13 C 1.50701 * 109.46914 * 121.14322 * 12 11 10 14 14 H 1.08003 * 120.00103 * 5.53219 * 13 12 11 15 15 C 1.37882 * 119.99922 * 185.53089 * 13 12 11 16 16 N 1.31505 * 120.00273 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99783 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47115 * 90.00317 * 17 15 13 19 19 H 1.48499 * 109.47323 * 209.99899 * 17 15 13 20 20 H 1.48500 * 109.47513 * 330.00549 * 17 15 13 21 21 C 1.46898 * 110.99728 * 66.04858 * 11 10 9 22 22 C 1.52998 * 109.47123 * 189.79754 * 21 11 10 23 23 C 1.53005 * 109.47105 * 48.21212 * 22 21 11 24 24 C 1.53004 * 109.47234 * 168.20822 * 22 21 11 25 25 C 1.53001 * 109.47471 * 288.21176 * 22 21 11 26 26 H 1.09009 * 109.46916 * 269.69483 * 1 2 3 27 27 H 1.08998 * 109.46871 * 29.68912 * 1 2 3 28 28 H 1.08992 * 109.47437 * 149.69115 * 1 2 3 29 29 H 1.07998 * 125.89954 * 180.02562 * 4 3 2 30 30 H 1.09005 * 115.54812 * 154.33659 * 6 5 4 31 31 H 1.09002 * 117.49444 * 359.97438 * 7 6 5 32 32 H 1.09000 * 117.50181 * 145.01788 * 7 6 5 33 33 H 1.08999 * 117.49755 * 214.97781 * 8 6 5 34 34 H 1.08995 * 117.50169 * 0.02562 * 8 6 5 35 35 H 1.08996 * 109.47034 * 209.97553 * 10 9 2 36 36 H 1.09001 * 109.47102 * 329.97738 * 10 9 2 37 37 H 1.09007 * 109.47245 * 241.13690 * 12 11 10 38 38 H 1.08995 * 109.47956 * 1.13979 * 12 11 10 39 39 H 0.97003 * 120.00223 * 180.02562 * 16 15 13 40 40 H 1.08999 * 109.47299 * 309.79919 * 21 11 10 41 41 H 1.09001 * 109.47116 * 69.80131 * 21 11 10 42 42 H 1.08996 * 109.46847 * 59.99586 * 23 22 21 43 43 H 1.09001 * 109.47191 * 180.02562 * 23 22 21 44 44 H 1.09002 * 109.46830 * 300.00133 * 23 22 21 45 45 H 1.09000 * 109.47023 * 60.00299 * 24 22 21 46 46 H 1.09001 * 109.46963 * 179.97438 * 24 22 21 47 47 H 1.08995 * 109.47220 * 300.00143 * 24 22 21 48 48 H 1.09000 * 109.47283 * 77.00329 * 25 22 21 49 49 H 1.08997 * 109.47532 * 197.01301 * 25 22 21 50 50 H 1.09004 * 109.46735 * 317.01249 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5346 0.7320 -0.0058 5 6 3.5437 -0.6667 -0.0090 6 6 4.7679 -1.5454 -0.0153 7 6 6.1250 -0.8678 0.1851 8 6 5.7335 -1.4033 -1.1936 9 6 2.2589 -1.0912 -0.0059 10 6 1.7972 -2.5258 -0.0085 11 7 1.6419 -2.9877 -1.3943 12 6 0.9712 -4.2938 -1.4418 13 6 -0.2919 -4.1805 -2.2559 14 1 -0.5234 -3.2583 -2.7681 15 6 -1.1520 -5.2543 -2.3469 16 7 -0.8704 -6.3771 -1.7229 17 14 -2.7181 -5.1137 -3.3554 18 1 -2.4453 -5.5315 -4.7541 19 1 -3.7635 -5.9919 -2.7715 20 1 -3.1904 -3.7058 -3.3427 21 6 2.9393 -3.0369 -2.0814 22 6 2.7165 -3.2823 -3.5750 23 6 1.6439 -2.3231 -4.0950 24 6 4.0246 -3.0432 -4.3319 25 6 2.2582 -4.7258 -3.7920 26 1 -0.3633 -0.0055 1.0277 27 1 -0.3633 0.8928 -0.5090 28 1 -0.3634 -0.8871 -0.5186 29 1 4.4054 1.3709 -0.0069 30 1 4.6344 -2.5406 0.4088 31 1 6.1323 0.2137 0.3211 32 1 6.8846 -1.4171 0.7414 33 1 6.2355 -2.3050 -1.5443 34 1 5.4835 -0.6740 -1.9641 35 1 2.5351 -3.1458 0.5006 36 1 0.8407 -2.6006 0.5088 37 1 1.6349 -5.0266 -1.9009 38 1 0.7235 -4.6122 -0.4292 39 1 -1.4754 -7.1327 -1.7872 40 1 3.4601 -2.0895 -1.9425 41 1 3.5400 -3.8460 -1.6659 42 1 1.9704 -1.2947 -3.9404 43 1 1.4848 -2.4982 -5.1590 44 1 0.7120 -2.4933 -3.5558 45 1 4.7888 -3.7266 -3.9614 46 1 3.8659 -3.2185 -5.3959 47 1 4.3511 -2.0149 -4.1774 48 1 1.2065 -4.8178 -3.5208 49 1 2.3882 -4.9947 -4.8402 50 1 2.8536 -5.3935 -3.1691 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596995003.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:45:27 Heat of formation + Delta-G solvation = 111.847950 kcal Electronic energy + Delta-G solvation = -27491.854005 eV Core-core repulsion = 24136.136362 eV Total energy + Delta-G solvation = -3355.717643 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.16308 -38.23347 -36.89538 -34.51215 -32.92032 -32.53606 -30.36927 -27.85633 -26.59358 -26.46469 -26.28473 -25.77634 -23.59068 -22.69466 -22.18099 -20.84688 -19.94226 -18.87969 -18.03239 -16.59640 -16.07930 -15.61225 -15.33916 -14.74664 -14.58668 -14.15440 -14.01870 -13.92654 -13.69771 -13.12409 -12.83196 -12.60931 -12.50059 -12.29305 -12.22529 -12.01621 -11.69112 -11.62148 -11.40990 -11.35684 -11.27741 -11.00655 -10.78273 -10.68215 -10.51769 -10.37532 -10.35550 -10.12411 -9.89342 -9.79921 -9.48828 -9.34691 -9.16445 -8.89962 -8.41246 -7.86126 -7.25946 -6.06044 -4.06010 2.16674 2.84279 2.93428 3.28019 3.35700 3.38184 4.15084 4.37851 4.68429 4.91328 5.03696 5.07285 5.16413 5.22681 5.26550 5.40610 5.46611 5.53961 5.54834 5.58790 5.66244 5.73925 5.82781 5.86376 5.99986 6.04333 6.05871 6.13132 6.20138 6.23803 6.36716 6.40255 6.45670 6.47035 6.49455 6.56933 6.59528 6.87172 6.91511 6.99122 7.02960 7.11659 7.30501 7.31842 7.42299 7.72096 7.89371 8.01386 8.09689 8.19875 8.48515 9.02028 9.55864 11.01867 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.014593 B = 0.005479 C = 0.004634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.259225 B = 5109.405989 C = 6040.635209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.358 5.358 3 N -0.308 5.308 4 C 0.048 3.952 5 C -0.218 4.218 6 C -0.063 4.063 7 C -0.181 4.181 8 C -0.172 4.172 9 C 0.126 3.874 10 C 0.115 3.885 11 N -0.524 5.524 12 C 0.170 3.830 13 C -0.492 4.492 14 H 0.070 0.930 15 C 0.056 3.944 16 N -0.895 5.895 17 Si 0.889 3.111 18 H -0.281 1.281 19 H -0.289 1.289 20 H -0.274 1.274 21 C 0.066 3.934 22 C -0.053 4.053 23 C -0.135 4.135 24 C -0.137 4.137 25 C -0.169 4.169 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.104 0.896 29 H 0.173 0.827 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.047 0.953 36 H 0.082 0.918 37 H 0.036 0.964 38 H 0.011 0.989 39 H 0.261 0.739 40 H 0.075 0.925 41 H 0.016 0.984 42 H 0.030 0.970 43 H 0.030 0.970 44 H 0.097 0.903 45 H 0.045 0.955 46 H 0.047 0.953 47 H 0.045 0.955 48 H 0.125 0.875 49 H 0.027 0.973 50 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.399 8.815 2.283 13.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.139 5.139 3 N -0.129 5.129 4 C -0.137 4.137 5 C -0.230 4.230 6 C -0.082 4.082 7 C -0.218 4.218 8 C -0.210 4.210 9 C -0.004 4.004 10 C -0.015 4.015 11 N -0.249 5.249 12 C 0.046 3.954 13 C -0.530 4.530 14 H 0.087 0.913 15 C -0.145 4.145 16 N -0.535 5.535 17 Si 0.717 3.283 18 H -0.207 1.207 19 H -0.215 1.215 20 H -0.198 1.198 21 C -0.062 4.062 22 C -0.053 4.053 23 C -0.192 4.192 24 C -0.195 4.195 25 C -0.225 4.225 26 H 0.086 0.914 27 H 0.101 0.899 28 H 0.122 0.878 29 H 0.190 0.810 30 H 0.121 0.879 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.054 0.946 38 H 0.029 0.971 39 H 0.071 0.929 40 H 0.094 0.906 41 H 0.035 0.965 42 H 0.049 0.951 43 H 0.049 0.951 44 H 0.116 0.884 45 H 0.064 0.936 46 H 0.066 0.934 47 H 0.064 0.936 48 H 0.143 0.857 49 H 0.046 0.954 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 8.043 9.988 2.086 12.992 hybrid contribution 0.243 -1.301 -0.145 1.331 sum 8.286 8.687 1.941 12.161 Atomic orbital electron populations 1.21916 0.74094 1.05342 1.02859 1.48275 1.06519 1.03083 1.56021 1.77266 1.01481 1.08595 1.25561 1.23483 0.95029 0.94298 1.00939 1.18900 0.92482 0.92910 1.18674 1.20114 0.87276 0.98251 1.02556 1.22961 0.98111 1.00476 1.00236 1.22986 1.03358 1.03035 0.91589 1.20887 0.90127 0.90731 0.98625 1.20704 1.00527 0.87117 0.93161 1.62177 1.19780 1.32570 1.10337 1.20389 0.94258 0.83748 0.97026 1.21200 1.04264 0.98509 1.29045 0.91258 1.24991 0.97978 0.95536 0.96033 1.69943 1.37507 1.03041 1.42996 0.86641 0.83268 0.78003 0.80409 1.20692 1.21459 1.19841 1.22319 0.90432 0.99876 0.93600 1.20327 0.94241 0.96727 0.94024 1.21904 1.01562 0.96588 0.99096 1.21887 0.97618 1.00351 0.99631 1.22635 1.07554 0.93814 0.98535 0.91358 0.89851 0.87786 0.81004 0.87856 0.89061 0.89090 0.88976 0.88928 0.93472 0.89937 0.94589 0.97069 0.92947 0.90648 0.96534 0.95065 0.95102 0.88415 0.93615 0.93374 0.93553 0.85667 0.95432 0.94494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.34 11.09 59.85 0.66 2.01 16 2 N -0.36 -5.77 4.01 -63.88 -0.26 -6.03 16 3 N -0.31 -5.06 12.57 30.62 0.39 -4.68 16 4 C 0.05 0.70 11.35 -17.37 -0.20 0.50 16 5 C -0.22 -3.25 4.82 -105.06 -0.51 -3.75 16 6 C -0.06 -0.81 4.54 -91.77 -0.42 -1.23 16 7 C -0.18 -1.90 10.02 -26.73 -0.27 -2.17 16 8 C -0.17 -2.00 9.11 -26.73 -0.24 -2.24 16 9 C 0.13 2.04 5.84 -82.26 -0.48 1.56 16 10 C 0.11 1.97 4.48 -4.97 -0.02 1.95 16 11 N -0.52 -10.01 3.29 -237.52 -0.78 -10.79 16 12 C 0.17 3.88 4.27 -4.98 -0.02 3.86 16 13 C -0.49 -12.11 6.28 -34.44 -0.22 -12.33 16 14 H 0.07 1.72 5.67 -52.48 -0.30 1.42 16 15 C 0.06 1.45 5.43 -17.82 -0.10 1.35 16 16 N -0.90 -24.55 13.29 55.43 0.74 -23.81 16 17 Si 0.89 20.33 29.54 -169.99 -5.02 15.30 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 21 C 0.07 1.16 3.46 -3.83 -0.01 1.15 16 22 C -0.05 -0.94 0.79 -154.50 -0.12 -1.06 16 23 C -0.13 -2.51 8.09 37.16 0.30 -2.21 16 24 C -0.14 -2.07 8.37 37.16 0.31 -1.76 16 25 C -0.17 -3.36 6.99 37.16 0.26 -3.10 16 26 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 27 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.10 1.52 7.67 -51.93 -0.40 1.12 16 29 H 0.17 1.99 7.19 -52.49 -0.38 1.62 16 30 H 0.10 1.38 7.42 -51.93 -0.39 1.00 16 31 H 0.09 0.89 6.97 -51.93 -0.36 0.53 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.05 0.79 7.31 -51.93 -0.38 0.41 16 36 H 0.08 1.44 7.56 -51.93 -0.39 1.04 16 37 H 0.04 0.88 4.27 -51.93 -0.22 0.65 16 38 H 0.01 0.28 7.46 -51.93 -0.39 -0.11 16 39 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 40 H 0.08 1.27 3.88 -51.93 -0.20 1.07 16 41 H 0.02 0.30 7.81 -51.93 -0.41 -0.11 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.10 2.05 4.04 -51.93 -0.21 1.84 16 45 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.13 2.90 3.76 -51.93 -0.20 2.70 16 49 H 0.03 0.51 8.02 -51.93 -0.42 0.09 16 50 H 0.04 0.73 7.10 -51.93 -0.37 0.36 16 LS Contribution 374.83 15.07 5.65 5.65 Total: -1.00 -27.29 374.83 -8.72 -36.01 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -8.36 Total: 5.81 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: -1.07 Total: -17.46 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: 0.08 Total: -45.31 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -27.29 -8.72 -36.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596995003.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.856 kcal (2) G-P(sol) polarization free energy of solvation -27.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds