Wall clock time and date at job start Tue Mar 31 2020 08:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47572 * 2 1 4 4 C 1.53003 * 109.47170 * 120.00600 * 2 1 3 5 5 C 1.53001 * 109.47042 * 174.99698 * 4 2 1 6 6 N 1.46903 * 109.46977 * 185.18136 * 5 4 2 7 7 C 1.46898 * 111.00073 * 293.11255 * 6 5 4 8 8 C 1.50695 * 109.47170 * 160.61469 * 7 6 5 9 9 H 1.08007 * 119.99887 * 359.74661 * 8 7 6 10 10 C 1.37874 * 120.00178 * 179.75114 * 8 7 6 11 11 N 1.31518 * 119.99650 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00226 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47112 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46604 * 120.00074 * 12 10 8 15 15 H 1.48495 * 109.47233 * 239.99918 * 12 10 8 16 16 C 1.46896 * 110.99724 * 169.15083 * 6 5 4 17 17 C 1.50701 * 109.47688 * 293.95548 * 16 6 5 18 18 C 1.35311 * 126.12740 * 270.00163 * 17 16 6 19 19 C 1.50707 * 126.04051 * 359.97438 * 18 17 16 20 20 C 1.52997 * 117.49983 * 188.61916 * 19 18 17 21 21 C 1.52999 * 117.49690 * 119.99683 * 19 18 17 22 22 C 1.39870 * 107.91880 * 179.97438 * 18 17 16 23 23 N 1.30837 * 108.20342 * 359.97438 * 22 18 17 24 24 N 1.34945 * 126.12591 * 89.97858 * 17 16 6 25 25 C 1.46508 * 126.03522 * 359.75463 * 24 17 16 26 26 H 1.09003 * 109.46618 * 300.00118 * 1 2 3 27 27 H 1.09001 * 109.47267 * 59.98996 * 1 2 3 28 28 H 1.08995 * 109.47461 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46618 * 239.99882 * 2 1 3 30 30 H 1.09005 * 109.46598 * 60.00626 * 3 2 1 31 31 H 1.08995 * 109.47120 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47216 * 300.00553 * 3 2 1 33 33 H 1.08997 * 109.47205 * 54.99349 * 4 2 1 34 34 H 1.08999 * 109.47011 * 294.99627 * 4 2 1 35 35 H 1.08997 * 109.47375 * 65.18507 * 5 4 2 36 36 H 1.09005 * 109.47276 * 305.18026 * 5 4 2 37 37 H 1.09004 * 109.46526 * 280.61382 * 7 6 5 38 38 H 1.08999 * 109.47257 * 40.60753 * 7 6 5 39 39 H 0.97002 * 119.99348 * 180.02562 * 11 10 8 40 40 H 1.09005 * 109.46750 * 173.95512 * 16 6 5 41 41 H 1.09003 * 109.47063 * 53.95999 * 16 6 5 42 42 H 1.08999 * 115.54928 * 334.33006 * 19 18 17 43 43 H 1.09000 * 117.49590 * 0.02562 * 20 19 18 44 44 H 1.08995 * 117.49646 * 145.01517 * 20 19 18 45 45 H 1.09000 * 117.49723 * 214.97824 * 21 19 18 46 46 H 1.09003 * 117.50029 * 0.02562 * 21 19 18 47 47 H 1.08000 * 125.89652 * 179.97438 * 22 18 17 48 48 H 1.08990 * 109.46952 * 90.00569 * 25 24 17 49 49 H 1.09008 * 109.46562 * 210.00412 * 25 24 17 50 50 H 1.09002 * 109.46974 * 329.99955 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.8312 1.1878 6 7 4.0442 -1.6309 2.3231 7 6 3.8125 -0.9322 3.5943 8 6 3.8592 -1.9237 4.7282 9 1 4.0387 -2.9691 4.5244 10 6 3.6729 -1.4964 6.0258 11 7 3.4538 -0.2235 6.2738 12 14 3.7301 -2.7255 7.4313 13 1 3.9892 -4.0841 6.8906 14 1 4.8171 -2.3518 8.3715 15 1 2.4302 -2.7175 8.1491 16 6 5.4632 -1.9752 2.1625 17 6 5.6261 -2.8963 0.9809 18 6 5.5767 -4.2482 1.0105 19 6 5.3494 -5.1007 2.2323 20 6 5.5302 -6.6125 2.0825 21 6 4.1272 -6.0212 2.2340 22 6 5.7740 -4.7147 -0.2933 23 7 5.9354 -3.6799 -1.0776 24 7 5.8469 -2.5207 -0.2963 25 6 5.9659 -1.1433 -0.7812 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8932 -0.5139 -0.8900 30 1 1.6768 1.9562 0.8901 31 1 3.1300 1.4423 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6053 -1.7199 1.2951 34 1 1.7517 -0.1585 2.1369 35 1 4.0031 0.1656 1.2349 36 1 3.8572 -1.3131 0.2548 37 1 4.5850 -0.1771 3.7398 38 1 2.8344 -0.4517 3.5718 39 1 3.3230 0.0771 7.1867 40 1 5.8203 -2.4737 3.0637 41 1 6.0412 -1.0660 1.9968 42 1 5.6413 -4.6501 3.1809 43 1 5.8140 -6.9906 1.1004 44 1 5.9414 -7.1568 2.9326 45 1 3.6155 -6.1765 3.1838 46 1 3.4879 -6.0105 1.3512 47 1 5.7903 -5.7502 -0.5997 48 1 7.0089 -0.8306 -0.7348 49 1 5.6160 -1.0897 -1.8122 50 1 5.3610 -0.4850 -0.1575 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596995871.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:45:30 Heat of formation + Delta-G solvation = 92.781325 kcal Electronic energy + Delta-G solvation = -26557.815579 eV Core-core repulsion = 23201.271145 eV Total energy + Delta-G solvation = -3356.544434 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.13370 -37.64433 -36.66178 -35.45698 -32.97680 -32.40086 -30.78644 -28.81892 -27.02630 -26.99037 -26.55197 -24.62205 -22.95200 -22.48987 -21.93905 -20.69321 -19.85331 -19.53946 -18.63371 -16.52869 -16.32512 -15.63862 -15.19227 -15.06532 -14.78425 -14.47650 -14.07287 -13.86886 -13.78906 -13.53249 -13.09323 -12.89949 -12.64568 -12.55896 -12.35112 -12.07444 -11.99333 -11.86653 -11.37048 -11.23473 -11.21216 -11.14099 -10.98100 -10.70839 -10.60596 -10.44340 -10.42757 -10.29902 -10.15866 -10.10806 -9.92873 -9.73382 -9.27614 -8.96197 -8.43815 -7.76963 -7.32876 -6.04509 -4.05195 2.15462 2.76414 3.02380 3.29735 3.38018 3.42345 4.37973 4.41827 4.70320 4.77918 5.02268 5.10263 5.15233 5.15923 5.22149 5.29585 5.31262 5.32648 5.44233 5.45621 5.53765 5.59777 5.62655 5.74348 5.78413 5.88710 5.90553 5.94719 5.95423 6.00533 6.07193 6.12687 6.23150 6.27430 6.33196 6.34099 6.41094 6.47611 6.59302 6.69276 6.74671 6.79786 6.96196 7.14545 7.26207 7.32554 7.80091 7.99954 8.05041 8.11150 8.48841 9.03536 9.59306 11.06047 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.008037 B = 0.006703 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3483.177236 B = 4176.386451 C = 6496.904862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 C -0.147 4.147 4 C -0.108 4.108 5 C 0.049 3.951 6 N -0.523 5.523 7 C 0.192 3.808 8 C -0.502 4.502 9 H 0.066 0.934 10 C 0.056 3.944 11 N -0.900 5.900 12 Si 0.893 3.107 13 H -0.271 1.271 14 H -0.286 1.286 15 H -0.285 1.285 16 C 0.124 3.876 17 C 0.115 3.885 18 C -0.191 4.191 19 C -0.059 4.059 20 C -0.187 4.187 21 C -0.166 4.166 22 C 0.048 3.952 23 N -0.309 5.309 24 N -0.374 5.374 25 C 0.092 3.908 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.022 0.978 36 H 0.060 0.940 37 H -0.009 1.009 38 H 0.038 0.962 39 H 0.260 0.740 40 H 0.108 0.892 41 H 0.029 0.971 42 H 0.112 0.888 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.089 0.911 47 H 0.175 0.825 48 H 0.069 0.931 49 H 0.085 0.915 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.566 -2.771 -12.584 12.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 C -0.204 4.204 4 C -0.146 4.146 5 C -0.079 4.079 6 N -0.247 5.247 7 C 0.067 3.933 8 C -0.541 4.541 9 H 0.085 0.915 10 C -0.145 4.145 11 N -0.540 5.540 12 Si 0.721 3.279 13 H -0.195 1.195 14 H -0.212 1.212 15 H -0.211 1.211 16 C -0.006 4.006 17 C -0.013 4.013 18 C -0.203 4.203 19 C -0.078 4.078 20 C -0.224 4.224 21 C -0.204 4.204 22 C -0.137 4.137 23 N -0.129 5.129 24 N -0.157 5.157 25 C -0.049 4.049 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.040 0.960 36 H 0.078 0.922 37 H 0.009 0.991 38 H 0.056 0.944 39 H 0.070 0.930 40 H 0.126 0.874 41 H 0.047 0.953 42 H 0.130 0.870 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.112 0.888 46 H 0.107 0.893 47 H 0.192 0.808 48 H 0.088 0.912 49 H 0.104 0.896 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.492 -2.518 -13.682 13.991 hybrid contribution 0.304 0.002 1.601 1.630 sum 1.796 -2.517 -12.081 12.470 Atomic orbital electron populations 1.21808 0.95486 1.01584 1.01303 1.21106 0.95563 0.96124 0.98646 1.21878 1.00944 0.96261 1.01331 1.21620 0.94924 1.00953 0.97060 1.22335 0.95981 0.94791 0.94836 1.62131 1.13999 1.45133 1.03482 1.19826 0.96584 0.92982 0.83895 1.21209 1.47863 0.94849 0.90142 0.91542 1.24968 0.95548 0.95152 0.98871 1.69964 1.49671 1.14168 1.20170 0.86509 0.77524 0.81632 0.82208 1.19510 1.21220 1.21111 1.20610 0.91204 0.94982 0.93768 1.20973 0.98875 0.95074 0.86346 1.18932 1.15322 0.91715 0.94334 1.20114 1.02216 0.89336 0.96137 1.22952 1.00899 0.96249 1.02282 1.22882 0.90693 1.03853 1.02928 1.23561 1.00412 0.98088 0.91667 1.77236 1.25877 0.90738 1.19098 1.48288 1.56501 1.05833 1.05112 1.22007 1.02925 0.78233 1.01774 0.92599 0.93289 0.92792 0.91988 0.92518 0.92831 0.93379 0.91323 0.91158 0.95984 0.92199 0.99079 0.94426 0.93046 0.87412 0.95333 0.87005 0.89371 0.89154 0.88830 0.89274 0.80821 0.91209 0.89601 0.88948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.19 37.16 0.34 -1.41 16 2 C -0.10 -1.27 2.92 -90.62 -0.26 -1.53 16 3 C -0.15 -1.80 8.95 37.16 0.33 -1.47 16 4 C -0.11 -1.78 4.56 -26.73 -0.12 -1.91 16 5 C 0.05 0.83 3.09 -3.82 -0.01 0.82 16 6 N -0.52 -10.50 4.41 -237.51 -1.05 -11.55 16 7 C 0.19 4.64 4.61 -4.98 -0.02 4.62 16 8 C -0.50 -13.29 8.55 -34.44 -0.29 -13.59 16 9 H 0.07 1.75 7.77 -52.48 -0.41 1.35 16 10 C 0.06 1.51 5.46 -17.82 -0.10 1.42 16 11 N -0.90 -25.82 13.29 55.43 0.74 -25.08 16 12 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 13 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 14 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 C 0.12 2.29 4.71 -4.98 -0.02 2.27 16 17 C 0.11 1.96 5.61 -82.27 -0.46 1.50 16 18 C -0.19 -3.17 5.76 -105.05 -0.61 -3.78 16 19 C -0.06 -0.93 5.95 -91.77 -0.55 -1.48 16 20 C -0.19 -2.40 10.02 -26.73 -0.27 -2.67 16 21 C -0.17 -2.44 10.23 -26.73 -0.27 -2.71 16 22 C 0.05 0.74 11.35 -17.36 -0.20 0.54 16 23 N -0.31 -5.07 12.58 30.62 0.39 -4.69 16 24 N -0.37 -5.92 3.62 -63.88 -0.23 -6.15 16 25 C 0.09 1.12 10.21 59.85 0.61 1.73 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.65 6.68 -51.93 -0.35 0.30 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.07 1.30 6.49 -51.93 -0.34 0.97 16 35 H 0.02 0.37 6.37 -51.93 -0.33 0.04 16 36 H 0.06 0.97 4.78 -51.93 -0.25 0.73 16 37 H -0.01 -0.22 8.00 -51.93 -0.42 -0.64 16 38 H 0.04 0.98 6.02 -51.93 -0.31 0.67 16 39 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.11 2.14 6.58 -51.93 -0.34 1.80 16 41 H 0.03 0.50 7.71 -51.93 -0.40 0.10 16 42 H 0.11 1.92 7.42 -51.93 -0.39 1.54 16 43 H 0.09 1.01 6.97 -51.93 -0.36 0.65 16 44 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 46 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 47 H 0.17 2.14 7.19 -52.49 -0.38 1.77 16 48 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.09 0.91 8.14 -51.92 -0.42 0.49 16 50 H 0.09 1.12 4.69 -51.93 -0.24 0.88 16 LS Contribution 388.63 15.07 5.86 5.86 Total: -1.00 -29.39 388.63 -9.94 -39.33 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -8.72 Total: 3.91 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -1.90 Total: -17.64 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: -0.16 Total: -47.47 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.39 -9.94 -39.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596995871.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.114 kcal (2) G-P(sol) polarization free energy of solvation -29.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds