Wall clock time and date at job start Tue Mar 31 2020 08:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47459 * 2 1 4 4 C 1.53008 * 109.47168 * 119.99950 * 2 1 3 5 5 C 1.53002 * 109.47067 * 174.99730 * 4 2 1 6 6 N 1.46899 * 109.46522 * 184.85577 * 5 4 2 7 7 C 1.46904 * 111.00196 * 287.66270 * 6 5 4 8 8 C 1.50700 * 109.47121 * 296.82908 * 7 6 5 9 9 H 1.08002 * 120.00109 * 3.82872 * 8 7 6 10 10 C 1.37880 * 119.99848 * 183.83993 * 8 7 6 11 11 N 1.31513 * 119.99925 * 5.16940 * 10 8 7 12 12 Si 1.86803 * 120.00161 * 185.17493 * 10 8 7 13 13 H 1.48500 * 109.46971 * 59.99460 * 12 10 8 14 14 H 1.48496 * 109.47376 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.46569 * 299.99813 * 12 10 8 16 16 C 1.46911 * 110.99751 * 163.71555 * 6 5 4 17 17 C 1.50695 * 109.46831 * 198.86344 * 16 6 5 18 18 C 1.35318 * 126.12932 * 265.21181 * 17 16 6 19 19 C 1.39868 * 107.92276 * 180.02562 * 18 17 16 20 20 N 1.30839 * 108.19971 * 0.25978 * 19 18 17 21 21 N 1.34948 * 126.12934 * 85.25959 * 17 16 6 22 22 C 1.46499 * 126.03214 * 359.96285 * 21 17 16 23 23 C 1.52998 * 109.47427 * 95.31001 * 22 21 17 24 24 C 1.53008 * 117.49927 * 243.32369 * 23 22 21 25 25 C 1.53005 * 117.50260 * 174.70041 * 23 22 21 26 26 H 1.09007 * 109.46735 * 300.00338 * 1 2 3 27 27 H 1.09001 * 109.46671 * 60.00054 * 1 2 3 28 28 H 1.08997 * 109.47255 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47471 * 239.99555 * 2 1 3 30 30 H 1.09002 * 109.47273 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47135 * 299.99662 * 3 2 1 32 32 H 1.09000 * 109.47401 * 59.99688 * 3 2 1 33 33 H 1.09003 * 109.46930 * 54.99599 * 4 2 1 34 34 H 1.08998 * 109.46538 * 295.00057 * 4 2 1 35 35 H 1.08997 * 109.46905 * 64.85732 * 5 4 2 36 36 H 1.08999 * 109.46975 * 304.85389 * 5 4 2 37 37 H 1.09006 * 109.46920 * 56.82121 * 7 6 5 38 38 H 1.08995 * 109.47124 * 176.82275 * 7 6 5 39 39 H 0.96999 * 119.99779 * 180.02562 * 11 10 8 40 40 H 1.09005 * 109.46884 * 78.86208 * 16 6 5 41 41 H 1.08998 * 109.46859 * 318.86494 * 16 6 5 42 42 H 1.08000 * 126.03626 * 0.02562 * 18 17 16 43 43 H 1.08006 * 125.89754 * 180.02562 * 19 18 17 44 44 H 1.09001 * 109.46809 * 215.30542 * 22 21 17 45 45 H 1.09000 * 109.47531 * 335.30359 * 22 21 17 46 46 H 1.09003 * 115.55348 * 29.02514 * 23 22 21 47 47 H 1.09000 * 117.49286 * 359.97438 * 24 23 22 48 48 H 1.08996 * 117.50243 * 145.01747 * 24 23 22 49 49 H 1.08999 * 117.49766 * 214.97801 * 25 23 22 50 50 H 1.08997 * 117.49155 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.8311 1.1880 6 7 4.0448 -1.6241 2.3276 7 6 3.9322 -0.8662 3.5810 8 6 4.8195 0.3500 3.5141 9 1 5.3604 0.5746 2.6067 10 6 4.9408 1.1761 4.6114 11 7 4.3644 0.8492 5.7474 12 14 5.9238 2.7595 4.4844 13 1 5.3244 3.6320 3.4430 14 1 5.9007 3.4627 5.7921 15 1 7.3273 2.4425 4.1170 16 6 5.4248 -2.0781 2.1092 17 6 5.7249 -3.2337 3.0287 18 6 6.3177 -3.1544 4.2425 19 6 6.4093 -4.4497 4.7622 20 7 5.8951 -5.2776 3.8892 21 7 5.4513 -4.5332 2.7887 22 6 4.8086 -5.0709 1.5871 23 6 5.8808 -5.5382 0.6008 24 6 5.9592 -4.8222 -0.7491 25 6 5.4104 -6.2482 -0.6702 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6053 -1.7198 1.2952 34 1 1.7516 -0.1583 2.1369 35 1 4.0029 0.1661 1.2290 36 1 3.8569 -1.3183 0.2577 37 1 2.8978 -0.5538 3.7250 38 1 4.2410 -1.4959 4.4154 39 1 4.4495 1.4305 6.5192 40 1 6.1138 -1.2595 2.3175 41 1 5.5426 -2.3975 1.0737 42 1 6.6598 -2.2506 4.7247 43 1 6.8347 -4.7201 5.7174 44 1 4.1744 -5.9142 1.8608 45 1 4.2005 -4.2950 1.1221 46 1 6.8165 -5.8740 1.0478 47 1 5.2466 -4.0185 -0.9346 48 1 6.9466 -4.6867 -1.1903 49 1 6.0367 -7.0508 -1.0595 50 1 4.3370 -6.3828 -0.8035 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596996599.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:45:32 Heat of formation + Delta-G solvation = 86.153466 kcal Electronic energy + Delta-G solvation = -26251.138250 eV Core-core repulsion = 22894.306411 eV Total energy + Delta-G solvation = -3356.831839 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.67428 -37.52821 -37.51111 -35.40510 -32.59424 -32.21685 -30.56172 -28.35320 -26.95493 -26.87441 -26.52901 -24.43045 -23.12839 -22.51758 -21.28686 -20.36466 -20.19673 -19.35967 -19.00132 -16.67810 -16.17796 -15.37922 -15.12039 -15.01088 -14.70826 -14.60319 -14.14529 -13.87826 -13.44235 -13.35621 -13.19151 -12.85977 -12.63956 -12.34768 -12.24904 -11.98645 -11.93695 -11.66358 -11.59381 -11.35672 -11.10910 -10.96264 -10.87062 -10.64610 -10.57451 -10.50641 -10.31599 -10.15377 -10.12347 -10.00580 -9.96294 -9.90034 -9.58278 -8.70076 -8.40821 -7.85654 -7.23534 -6.02315 -4.10172 2.45157 2.96912 3.27334 3.33438 3.34983 3.48846 3.69764 4.39990 4.58647 4.74578 4.84593 4.88693 5.11963 5.19221 5.27174 5.28930 5.31331 5.33602 5.48095 5.50601 5.61471 5.65830 5.74351 5.77796 5.80774 5.84921 5.97489 5.99118 6.04374 6.07077 6.10734 6.16492 6.32738 6.33974 6.41688 6.43421 6.50994 6.52614 6.56704 6.87655 6.91002 6.92485 7.24750 7.31020 7.55516 7.64962 7.91727 7.99441 8.23743 8.28265 8.32837 8.98281 9.55210 11.02838 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.009106 B = 0.005719 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3074.270873 B = 4894.541521 C = 7071.197816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 C -0.147 4.147 4 C -0.104 4.104 5 C 0.060 3.940 6 N -0.539 5.539 7 C 0.186 3.814 8 C -0.547 4.547 9 H 0.054 0.946 10 C 0.070 3.930 11 N -0.885 5.885 12 Si 0.882 3.118 13 H -0.278 1.278 14 H -0.287 1.287 15 H -0.277 1.277 16 C 0.116 3.884 17 C 0.121 3.879 18 C -0.259 4.259 19 C 0.041 3.959 20 N -0.316 5.316 21 N -0.364 5.364 22 C 0.169 3.831 23 C -0.169 4.169 24 C -0.177 4.177 25 C -0.172 4.172 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.043 0.957 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.045 0.955 37 H 0.027 0.973 38 H 0.041 0.959 39 H 0.262 0.738 40 H 0.076 0.924 41 H 0.060 0.940 42 H 0.148 0.852 43 H 0.175 0.825 44 H 0.089 0.911 45 H 0.099 0.901 46 H 0.108 0.892 47 H 0.098 0.902 48 H 0.093 0.907 49 H 0.094 0.906 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.879 -7.799 -12.155 14.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.204 4.204 4 C -0.142 4.142 5 C -0.068 4.068 6 N -0.263 5.263 7 C 0.061 3.939 8 C -0.586 4.586 9 H 0.073 0.927 10 C -0.133 4.133 11 N -0.523 5.523 12 Si 0.710 3.290 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.203 1.203 16 C -0.014 4.014 17 C -0.006 4.006 18 C -0.288 4.288 19 C -0.144 4.144 20 N -0.137 5.137 21 N -0.147 5.147 22 C 0.047 3.953 23 C -0.188 4.188 24 C -0.214 4.214 25 C -0.210 4.210 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.045 0.955 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.166 0.834 43 H 0.192 0.808 44 H 0.107 0.893 45 H 0.117 0.883 46 H 0.126 0.874 47 H 0.116 0.884 48 H 0.112 0.888 49 H 0.113 0.887 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.556 -9.427 -12.286 15.564 hybrid contribution 1.292 2.573 0.314 2.896 sum -0.264 -6.853 -11.972 13.797 Atomic orbital electron populations 1.21822 0.95842 1.01238 1.01281 1.21082 0.95114 0.96482 0.98562 1.21865 1.01574 0.95936 1.01046 1.21549 0.95566 0.99885 0.97220 1.22016 0.95026 0.97465 0.92296 1.62511 1.17802 1.41149 1.04866 1.19813 0.96673 0.91327 0.86136 1.21580 1.28513 1.10064 0.98477 0.92745 1.24886 0.95494 0.97714 0.95184 1.69940 1.44022 1.37273 1.01105 0.86820 0.80710 0.84188 0.77285 1.20342 1.21266 1.20291 1.20557 0.93197 0.92936 0.94683 1.21016 0.97082 0.85467 0.97053 1.21342 1.12368 0.98407 0.96699 1.23697 0.99792 0.92050 0.98907 1.77187 1.20307 1.20252 0.95984 1.48334 1.47299 1.04368 1.14666 1.21091 0.92815 0.99935 0.81449 1.22727 1.01465 1.05067 0.89579 1.23086 1.02846 0.95528 0.99940 1.22937 1.01604 0.95726 1.00718 0.92716 0.93355 0.93048 0.92007 0.92264 0.93753 0.92506 0.92387 0.91336 0.93011 0.93650 0.95483 0.94050 0.92802 0.90572 0.92180 0.83450 0.80841 0.89324 0.88278 0.87386 0.88371 0.88808 0.88709 0.88509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.19 37.16 0.34 -1.38 16 2 C -0.09 -1.25 2.92 -90.62 -0.26 -1.51 16 3 C -0.15 -2.03 8.95 37.16 0.33 -1.70 16 4 C -0.10 -1.69 4.64 -26.73 -0.12 -1.81 16 5 C 0.06 1.05 4.45 -3.82 -0.02 1.03 16 6 N -0.54 -10.67 4.59 -237.51 -1.09 -11.76 16 7 C 0.19 4.53 4.88 -4.97 -0.02 4.50 16 8 C -0.55 -14.06 7.18 -34.44 -0.25 -14.30 16 9 H 0.05 1.38 6.07 -52.49 -0.32 1.06 16 10 C 0.07 1.89 5.45 -17.82 -0.10 1.79 16 11 N -0.89 -25.20 13.29 55.43 0.74 -24.46 16 12 Si 0.88 20.72 29.54 -169.99 -5.02 15.69 16 13 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 14 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 C 0.12 2.15 4.72 -4.97 -0.02 2.13 16 17 C 0.12 2.31 5.96 -82.27 -0.49 1.82 16 18 C -0.26 -5.11 9.90 -40.01 -0.40 -5.51 16 19 C 0.04 0.73 12.03 -17.36 -0.21 0.52 16 20 N -0.32 -5.85 12.58 30.63 0.39 -5.46 16 21 N -0.36 -6.37 3.61 -57.14 -0.21 -6.57 16 22 C 0.17 2.34 6.48 -4.04 -0.03 2.32 16 23 C -0.17 -2.00 6.01 -90.61 -0.54 -2.55 16 24 C -0.18 -1.80 10.18 -26.72 -0.27 -2.07 16 25 C -0.17 -1.59 10.25 -26.73 -0.27 -1.87 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.87 6.68 -51.93 -0.35 0.52 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 1.29 6.92 -51.93 -0.36 0.93 16 35 H 0.05 1.01 4.99 -51.93 -0.26 0.75 16 36 H 0.04 0.69 7.68 -51.93 -0.40 0.29 16 37 H 0.03 0.72 6.71 -51.93 -0.35 0.37 16 38 H 0.04 1.13 6.91 -51.93 -0.36 0.77 16 39 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.08 1.57 6.26 -51.93 -0.33 1.24 16 41 H 0.06 0.97 7.35 -51.93 -0.38 0.58 16 42 H 0.15 3.08 8.06 -52.49 -0.42 2.66 16 43 H 0.17 2.52 8.06 -52.48 -0.42 2.09 16 44 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 45 H 0.10 1.35 7.25 -51.93 -0.38 0.97 16 46 H 0.11 1.44 8.14 -51.93 -0.42 1.02 16 47 H 0.10 0.98 8.03 -51.93 -0.42 0.56 16 48 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 395.11 15.07 5.95 5.95 Total: -1.00 -28.66 395.11 -10.52 -39.18 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -8.94 Total: 6.02 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: -2.34 Total: -18.59 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: -0.17 Total: -48.25 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -28.66 -10.52 -39.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596996599.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.333 kcal (2) G-P(sol) polarization free energy of solvation -28.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds