Wall clock time and date at job start Tue Mar 31 2020 08:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00040 * 2 1 4 4 C 1.52995 * 109.47309 * 184.47465 * 3 2 1 5 5 N 1.46904 * 109.46996 * 66.25724 * 4 3 2 6 6 C 1.46897 * 110.99678 * 57.51309 * 5 4 3 7 7 C 1.53010 * 109.47132 * 66.04575 * 6 5 4 8 8 H 1.08996 * 109.46916 * 304.99470 * 7 6 5 9 9 C 1.52993 * 109.47086 * 64.99951 * 7 6 5 10 10 C 1.52998 * 109.46920 * 184.99844 * 7 6 5 11 11 C 1.50695 * 109.46872 * 174.99954 * 10 7 6 12 12 H 1.07993 * 120.00554 * 0.02562 * 11 10 7 13 13 C 1.37882 * 119.99706 * 180.02562 * 11 10 7 14 14 N 1.31515 * 120.00278 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99879 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47123 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47471 * 119.99713 * 15 13 11 18 18 H 1.48508 * 109.46695 * 240.00016 * 15 13 11 19 19 C 1.46893 * 111.00054 * 293.55810 * 5 4 3 20 20 H 1.08993 * 109.47366 * 67.74971 * 19 5 4 21 21 C 1.53004 * 109.47079 * 187.75073 * 19 5 4 22 22 C 1.50701 * 109.47281 * 307.74528 * 19 5 4 23 23 C 1.38234 * 120.00129 * 318.31878 * 22 19 5 24 24 C 1.38233 * 120.00017 * 179.80986 * 23 22 19 25 25 C 1.38242 * 119.99904 * 0.39573 * 24 23 22 26 26 C 1.38232 * 119.99903 * 359.85388 * 25 24 23 27 27 C 1.38232 * 120.00243 * 359.95892 * 26 25 24 28 28 H 1.09001 * 109.47340 * 184.90679 * 1 2 3 29 29 H 1.08998 * 109.47276 * 304.91099 * 1 2 3 30 30 H 1.09005 * 109.46743 * 64.91123 * 1 2 3 31 31 H 1.09003 * 109.47041 * 64.47119 * 3 2 1 32 32 H 1.09003 * 109.46766 * 304.47697 * 3 2 1 33 33 H 1.09005 * 109.47156 * 306.26312 * 4 3 2 34 34 H 1.09002 * 109.47321 * 186.26221 * 4 3 2 35 35 H 1.08998 * 109.46832 * 186.04148 * 6 5 4 36 36 H 1.08992 * 109.47150 * 306.04293 * 6 5 4 37 37 H 1.08996 * 109.47635 * 59.99960 * 9 7 6 38 38 H 1.08998 * 109.47501 * 180.02562 * 9 7 6 39 39 H 1.09005 * 109.47429 * 299.99839 * 9 7 6 40 40 H 1.09003 * 109.47006 * 294.99866 * 10 7 6 41 41 H 1.08997 * 109.47280 * 54.99432 * 10 7 6 42 42 H 0.97000 * 120.00145 * 180.02562 * 14 13 11 43 43 H 1.09004 * 109.47193 * 180.02562 * 21 19 5 44 44 H 1.09008 * 109.46839 * 299.99743 * 21 19 5 45 45 H 1.08990 * 109.47602 * 59.99670 * 21 19 5 46 46 H 1.07999 * 119.99653 * 359.97438 * 23 22 19 47 47 H 1.07999 * 120.00172 * 180.23298 * 24 23 22 48 48 H 1.08002 * 119.99784 * 179.83945 * 25 24 23 49 49 H 1.08002 * 119.99860 * 179.97438 * 26 25 24 50 50 H 1.08003 * 120.00527 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5314 1.1865 -0.1125 5 7 3.8833 0.6330 -1.4270 6 6 3.3464 1.4672 -2.5103 7 6 4.0375 2.8323 -2.4933 8 1 3.9310 3.2810 -1.5057 9 6 5.5225 2.6561 -2.8161 10 6 3.3927 3.7434 -3.5396 11 6 3.9889 5.1238 -3.4394 12 1 4.7517 5.3304 -2.7035 13 6 3.5604 6.1229 -4.2875 14 7 2.6318 5.8712 -5.1842 15 14 4.3000 7.8338 -4.1639 16 1 5.3179 7.8562 -3.0828 17 1 4.9408 8.1907 -5.4551 18 1 3.2288 8.8149 -3.8549 19 6 3.4221 -0.7559 -1.5540 20 1 2.3326 -0.7762 -1.5767 21 6 3.9705 -1.3590 -2.8487 22 6 3.9151 -1.5585 -0.3777 23 6 5.2045 -1.3816 0.0881 24 6 5.6555 -2.1150 1.1696 25 6 4.8197 -3.0314 1.7801 26 6 3.5320 -3.2121 1.3110 27 6 3.0798 -2.4759 0.2320 28 1 -0.3634 -1.0239 0.0879 29 1 -0.3634 0.5881 0.8427 30 1 -0.3633 0.4358 -0.9308 31 1 1.7534 1.8175 0.9274 32 1 1.6265 1.8740 -0.8472 33 1 3.9032 0.5262 0.6710 34 1 3.9823 2.1726 -0.0009 35 1 3.5282 0.9800 -3.4682 36 1 2.2741 1.6011 -2.3684 37 1 5.6290 2.2073 -3.8037 38 1 6.0150 3.6284 -2.8035 39 1 5.9820 2.0069 -2.0707 40 1 3.5761 3.3397 -4.5354 41 1 2.3187 3.7977 -3.3618 42 1 2.3307 6.5740 -5.7810 43 1 3.6278 -2.3895 -2.9432 44 1 3.6138 -0.7785 -3.6996 45 1 5.0600 -1.3387 -2.8261 46 1 5.8587 -0.6683 -0.3912 47 1 6.6617 -1.9740 1.5359 48 1 5.1729 -3.6063 2.6234 49 1 2.8792 -3.9283 1.7877 50 1 2.0738 -2.6173 -0.1348 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602443600.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:10 Heat of formation + Delta-G solvation = -23.716927 kcal Electronic energy + Delta-G solvation = -26559.055359 eV Core-core repulsion = 23165.166431 eV Total energy + Delta-G solvation = -3393.888928 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.98822 -38.29999 -36.85668 -34.68713 -32.56850 -31.66098 -30.72634 -29.85518 -28.02635 -26.78309 -26.14455 -25.58826 -23.41205 -22.92668 -22.32261 -21.54383 -19.60876 -18.62177 -16.78721 -16.63981 -16.44063 -16.18239 -15.35949 -15.29293 -14.69041 -14.58256 -14.26871 -14.20619 -13.82360 -13.49985 -13.14980 -12.96946 -12.55681 -12.44909 -12.27629 -12.20144 -12.00637 -11.69555 -11.52538 -11.41109 -11.28013 -11.17443 -10.94641 -10.87120 -10.82129 -10.69076 -10.45381 -10.23847 -10.20623 -9.60072 -9.44200 -9.10022 -8.92875 -8.75838 -8.48820 -8.32452 -7.81762 -5.97306 -3.98091 1.50133 1.55252 3.31861 3.39702 3.43658 3.79861 3.92203 4.28964 4.49169 4.86064 5.04637 5.08115 5.16012 5.25140 5.27197 5.37068 5.39313 5.40420 5.45698 5.57185 5.59360 5.62376 5.65723 5.69793 5.75835 5.84212 5.89866 6.01515 6.08248 6.16357 6.19692 6.24439 6.27693 6.42969 6.50024 6.56516 6.62199 6.64898 6.73881 6.84366 7.07000 7.14700 7.16038 7.20525 7.24997 7.49937 7.55217 7.70845 7.87187 8.03483 8.47898 9.08774 9.65393 11.14206 Molecular weight = 305.21amu Principal moments of inertia in cm(-1) A = 0.020705 B = 0.003499 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.001001 B = 8000.224803 C = 8493.342538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.378 6.378 3 C 0.018 3.982 4 C 0.053 3.947 5 N -0.520 5.520 6 C 0.053 3.947 7 C -0.079 4.079 8 H 0.054 0.946 9 C -0.122 4.122 10 C 0.028 3.972 11 C -0.510 4.510 12 H 0.056 0.944 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.888 3.112 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.285 1.285 19 C 0.113 3.887 20 H 0.073 0.927 21 C -0.143 4.143 22 C -0.055 4.055 23 C -0.100 4.100 24 C -0.130 4.130 25 C -0.130 4.130 26 C -0.129 4.129 27 C -0.098 4.098 28 H 0.080 0.920 29 H 0.037 0.963 30 H 0.039 0.961 31 H 0.046 0.954 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.032 0.968 37 H 0.038 0.962 38 H 0.051 0.949 39 H 0.042 0.958 40 H 0.015 0.985 41 H 0.010 0.990 42 H 0.258 0.742 43 H 0.052 0.948 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.129 0.871 47 H 0.115 0.885 48 H 0.113 0.887 49 H 0.113 0.887 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.207 -17.584 12.145 21.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.297 6.297 3 C -0.060 4.060 4 C -0.076 4.076 5 N -0.243 5.243 6 C -0.074 4.074 7 C -0.098 4.098 8 H 0.072 0.928 9 C -0.179 4.179 10 C -0.010 4.010 11 C -0.548 4.548 12 H 0.075 0.925 13 C -0.146 4.146 14 N -0.537 5.537 15 Si 0.716 3.284 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.212 1.212 19 C 0.006 3.994 20 H 0.090 0.910 21 C -0.200 4.200 22 C -0.056 4.056 23 C -0.118 4.118 24 C -0.148 4.148 25 C -0.149 4.149 26 C -0.147 4.147 27 C -0.117 4.117 28 H 0.098 0.902 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.112 0.888 35 H 0.091 0.909 36 H 0.050 0.950 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.033 0.967 41 H 0.028 0.972 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.147 0.853 47 H 0.133 0.867 48 H 0.131 0.869 49 H 0.131 0.869 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.331 -17.670 11.947 21.333 hybrid contribution -0.917 1.343 0.115 1.631 sum -0.587 -16.327 12.062 20.308 Atomic orbital electron populations 1.22698 0.82250 1.02036 0.99949 1.88013 1.18759 1.27848 1.95060 1.23413 0.96796 0.85047 1.00755 1.22385 0.90837 1.01718 0.92620 1.62265 1.58903 1.00991 1.02182 1.22448 0.96610 0.94700 0.93650 1.21202 0.95563 0.92597 1.00465 0.92795 1.21568 0.96189 1.00489 0.99643 1.19114 0.95234 0.93330 0.93284 1.21276 1.21274 0.94943 1.17354 0.92544 1.25018 0.95210 0.98796 0.95533 1.69976 1.29841 1.33044 1.20840 0.86601 0.79101 0.84807 0.77885 1.19742 1.21101 1.21174 1.20734 0.98750 0.87714 0.92231 0.90966 1.21898 1.01912 0.99694 0.96505 1.19751 0.93633 0.95872 0.96312 1.21131 0.95773 0.98787 0.96119 1.21125 0.99548 0.97144 0.96979 1.21043 0.94458 0.99171 1.00196 1.21027 0.96017 1.00212 0.97476 1.20935 0.99082 0.95913 0.95745 0.90190 0.94433 0.94221 0.93525 0.92060 0.89995 0.88827 0.90934 0.95039 0.94263 0.92948 0.93894 0.96656 0.97168 0.93204 0.92852 0.92068 0.91995 0.85306 0.86668 0.86932 0.86868 0.86635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.38 -4.81 6.22 -35.23 -0.22 -5.03 16 3 C 0.02 0.24 5.74 37.16 0.21 0.45 16 4 C 0.05 0.73 5.20 -3.82 -0.02 0.71 16 5 N -0.52 -7.48 3.45 -228.04 -0.79 -8.26 16 6 C 0.05 0.89 3.92 -3.82 -0.01 0.87 16 7 C -0.08 -1.57 2.25 -90.62 -0.20 -1.78 16 8 H 0.05 1.08 6.39 -51.93 -0.33 0.75 16 9 C -0.12 -2.31 8.89 37.15 0.33 -1.98 16 10 C 0.03 0.70 4.45 -27.89 -0.12 0.58 16 11 C -0.51 -14.12 8.41 -34.44 -0.29 -14.41 16 12 H 0.06 1.53 7.05 -52.49 -0.37 1.16 16 13 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 14 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 15 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 16 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 C 0.11 1.50 1.62 -68.87 -0.11 1.39 16 20 H 0.07 1.02 5.60 -51.93 -0.29 0.73 16 21 C -0.14 -1.80 9.05 37.16 0.34 -1.46 16 22 C -0.06 -0.69 3.21 -104.62 -0.34 -1.03 16 23 C -0.10 -1.23 7.93 -39.58 -0.31 -1.55 16 24 C -0.13 -1.44 10.05 -39.58 -0.40 -1.84 16 25 C -0.13 -1.37 10.05 -39.58 -0.40 -1.77 16 26 C -0.13 -1.39 10.05 -39.59 -0.40 -1.78 16 27 C -0.10 -1.15 8.75 -39.58 -0.35 -1.50 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.92 5.90 -51.93 -0.31 0.62 16 33 H 0.08 1.12 5.71 -51.93 -0.30 0.83 16 34 H 0.09 1.35 6.49 -51.93 -0.34 1.01 16 35 H 0.07 1.25 5.98 -51.93 -0.31 0.94 16 36 H 0.03 0.55 5.80 -51.93 -0.30 0.25 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.05 1.07 6.95 -51.93 -0.36 0.71 16 39 H 0.04 0.73 7.75 -51.93 -0.40 0.32 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.80 6.30 -51.92 -0.33 0.48 16 45 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.13 1.65 7.77 -52.49 -0.41 1.24 16 47 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 48 H 0.11 0.95 8.06 -52.49 -0.42 0.52 16 49 H 0.11 0.99 8.06 -52.49 -0.42 0.57 16 50 H 0.12 1.28 7.99 -52.48 -0.42 0.87 16 LS Contribution 381.29 15.07 5.75 5.75 Total: -1.00 -29.40 381.29 -9.27 -38.67 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -8.67 Total: 0.61 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: -1.06 Total: -22.24 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: -0.05 Total: -34.36 kcal Atomic # 8 Polarization: -4.81 SS G_CDS: -0.22 Total: -5.03 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.40 -9.27 -38.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602443600.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.955 kcal (2) G-P(sol) polarization free energy of solvation -29.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds