Wall clock time and date at job start Tue Mar 31 2020 08:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99958 * 2 1 4 4 C 1.53005 * 109.46889 * 183.89056 * 3 2 1 5 5 N 1.46900 * 109.47242 * 69.03251 * 4 3 2 6 6 C 1.46908 * 110.99590 * 293.58009 * 5 4 3 7 7 C 1.52999 * 109.47393 * 301.17319 * 6 5 4 8 8 H 1.09002 * 109.46668 * 55.00377 * 7 6 5 9 9 C 1.53004 * 109.47244 * 295.00364 * 7 6 5 10 10 C 1.52993 * 109.46934 * 175.00110 * 7 6 5 11 11 C 1.50701 * 109.47123 * 184.99856 * 10 7 6 12 12 H 1.08001 * 119.99645 * 0.02562 * 11 10 7 13 13 C 1.37877 * 120.00460 * 179.97438 * 11 10 7 14 14 N 1.31522 * 119.99553 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00356 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.47134 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46964 * 120.00564 * 15 13 11 18 18 H 1.48498 * 109.47649 * 240.00284 * 15 13 11 19 19 C 1.46891 * 111.00016 * 57.53497 * 5 4 3 20 20 H 1.08998 * 109.47388 * 294.85950 * 19 5 4 21 21 C 1.53007 * 109.47210 * 174.85971 * 19 5 4 22 22 C 1.50696 * 109.47286 * 54.86168 * 19 5 4 23 23 C 1.38236 * 120.00201 * 46.91453 * 22 19 5 24 24 C 1.38232 * 120.00556 * 179.79166 * 23 22 19 25 25 C 1.38239 * 119.99465 * 0.43528 * 24 23 22 26 26 C 1.38234 * 120.00119 * 359.81766 * 25 24 23 27 27 C 1.38233 * 120.00230 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.47129 * 304.81673 * 1 2 3 29 29 H 1.09006 * 109.46983 * 64.81116 * 1 2 3 30 30 H 1.08996 * 109.47545 * 184.81127 * 1 2 3 31 31 H 1.09002 * 109.47417 * 63.89008 * 3 2 1 32 32 H 1.08995 * 109.47068 * 303.88595 * 3 2 1 33 33 H 1.09004 * 109.46938 * 309.02894 * 4 3 2 34 34 H 1.09002 * 109.46743 * 189.03107 * 4 3 2 35 35 H 1.09003 * 109.46477 * 181.17390 * 6 5 4 36 36 H 1.08999 * 109.46953 * 61.17637 * 6 5 4 37 37 H 1.09000 * 109.46738 * 59.99754 * 9 7 6 38 38 H 1.08995 * 109.46922 * 179.97438 * 9 7 6 39 39 H 1.09003 * 109.46604 * 299.99902 * 9 7 6 40 40 H 1.08999 * 109.47684 * 304.99859 * 10 7 6 41 41 H 1.09000 * 109.47403 * 65.00355 * 10 7 6 42 42 H 0.97000 * 119.99800 * 179.97438 * 14 13 11 43 43 H 1.09004 * 109.46745 * 59.99750 * 21 19 5 44 44 H 1.08997 * 109.47235 * 180.02562 * 21 19 5 45 45 H 1.08998 * 109.46927 * 300.00261 * 21 19 5 46 46 H 1.08001 * 119.99640 * 359.97438 * 23 22 19 47 47 H 1.07997 * 120.00789 * 180.27169 * 24 23 22 48 48 H 1.08002 * 120.00143 * 179.83133 * 25 24 23 49 49 H 1.07997 * 120.00071 * 179.97438 * 26 25 24 50 50 H 1.07996 * 120.00514 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5325 1.1859 -0.0979 5 7 3.9000 0.6895 -1.4307 6 6 3.4356 -0.6907 -1.6248 7 6 4.0514 -1.5917 -0.5525 8 1 3.8217 -1.1906 0.4347 9 6 5.5689 -1.6449 -0.7410 10 6 3.4722 -3.0022 -0.6774 11 6 3.9846 -3.8575 0.4526 12 1 4.6559 -3.4369 1.1866 13 6 3.5956 -5.1767 0.5499 14 7 2.7777 -5.6887 -0.3437 15 14 4.2301 -6.2367 1.9510 16 1 5.1286 -5.4293 2.8149 17 1 3.0842 -6.7318 2.7553 18 1 4.9817 -7.3915 1.3971 19 6 3.3805 1.5727 -2.4831 20 1 2.2908 1.5478 -2.4733 21 6 3.8892 1.0969 -3.8455 22 6 3.8529 2.9820 -2.2348 23 6 5.1803 3.2230 -1.9333 24 6 5.6146 4.5161 -1.7098 25 6 4.7197 5.5674 -1.7788 26 6 3.3912 5.3259 -2.0751 27 6 2.9578 4.0332 -2.3029 28 1 -0.3633 0.5868 0.8437 29 1 -0.3633 0.4374 -0.9300 30 1 -0.3634 -1.0240 0.0862 31 1 1.7449 1.8214 0.9228 32 1 1.6346 1.8704 -0.8531 33 1 3.8918 0.4906 0.6608 34 1 3.9848 2.1646 0.0628 35 1 3.7390 -1.0406 -2.6116 36 1 2.3489 -0.7228 -1.5462 37 1 5.9815 -0.6399 -0.6520 38 1 6.0076 -2.2864 0.0232 39 1 5.7985 -2.0459 -1.7282 40 1 2.3842 -2.9536 -0.6319 41 1 3.7769 -3.4372 -1.6293 42 1 2.5043 -6.6169 -0.2755 43 1 3.5475 0.0775 -4.0251 44 1 3.5041 1.7526 -4.6264 45 1 4.9789 1.1219 -3.8553 46 1 5.8787 2.4012 -1.8754 47 1 6.6525 4.7049 -1.4786 48 1 5.0584 6.5775 -1.6015 49 1 2.6919 6.1472 -2.1287 50 1 1.9200 3.8446 -2.5348 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602443601.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:12 Heat of formation + Delta-G solvation = -22.387830 kcal Electronic energy + Delta-G solvation = -26571.329484 eV Core-core repulsion = 23177.498190 eV Total energy + Delta-G solvation = -3393.831294 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.06796 -38.39645 -36.67645 -34.69164 -32.47214 -31.53516 -30.94479 -29.98343 -28.05800 -26.69623 -26.21363 -25.02067 -23.62696 -22.97190 -22.37429 -21.74617 -19.61477 -18.46037 -16.84368 -16.59949 -16.28476 -16.13591 -15.49613 -15.31462 -14.72558 -14.61588 -14.25074 -14.08268 -13.85401 -13.48336 -13.32221 -12.90716 -12.50128 -12.42052 -12.28583 -12.12916 -11.94895 -11.82645 -11.50102 -11.38589 -11.24215 -11.18869 -10.97197 -10.86187 -10.76235 -10.63242 -10.49089 -10.17120 -10.03564 -9.54409 -9.18997 -8.97028 -8.96150 -8.80707 -8.68249 -8.21208 -7.77540 -5.87106 -3.86462 1.29414 1.36579 3.37771 3.45165 3.49611 3.72401 3.97421 4.28602 4.57073 4.68539 4.84131 4.92929 5.09101 5.14975 5.23766 5.35866 5.40867 5.43429 5.48810 5.50483 5.53615 5.54049 5.58771 5.64217 5.82302 5.90335 5.92322 5.99368 6.03273 6.06152 6.17675 6.26929 6.35301 6.40421 6.43888 6.47880 6.58261 6.65687 6.83610 6.87902 6.96072 7.19743 7.26887 7.37874 7.40441 7.56265 7.62554 7.86670 8.06653 8.16348 8.61220 9.20568 9.75784 11.24598 Molecular weight = 305.21amu Principal moments of inertia in cm(-1) A = 0.020603 B = 0.003605 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.675415 B = 7765.890995 C = 8241.695148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.363 6.363 3 C 0.023 3.977 4 C 0.051 3.949 5 N -0.520 5.520 6 C 0.052 3.948 7 C -0.074 4.074 8 H 0.059 0.941 9 C -0.125 4.125 10 C 0.032 3.968 11 C -0.504 4.504 12 H 0.054 0.946 13 C 0.054 3.946 14 N -0.898 5.898 15 Si 0.886 3.114 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.286 1.286 19 C 0.114 3.886 20 H 0.046 0.954 21 C -0.141 4.141 22 C -0.069 4.069 23 C -0.091 4.091 24 C -0.125 4.125 25 C -0.127 4.127 26 C -0.124 4.124 27 C -0.121 4.121 28 H 0.034 0.966 29 H 0.032 0.968 30 H 0.088 0.912 31 H 0.043 0.957 32 H 0.045 0.955 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.039 0.961 38 H 0.050 0.950 39 H 0.037 0.963 40 H 0.015 0.985 41 H 0.010 0.990 42 H 0.257 0.743 43 H 0.064 0.936 44 H 0.053 0.947 45 H 0.064 0.936 46 H 0.132 0.868 47 H 0.119 0.881 48 H 0.116 0.884 49 H 0.117 0.883 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.423 21.978 -4.265 22.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.281 6.281 3 C -0.056 4.056 4 C -0.077 4.077 5 N -0.243 5.243 6 C -0.074 4.074 7 C -0.093 4.093 8 H 0.078 0.922 9 C -0.182 4.182 10 C -0.005 4.005 11 C -0.543 4.543 12 H 0.073 0.927 13 C -0.146 4.146 14 N -0.539 5.539 15 Si 0.714 3.286 16 H -0.198 1.198 17 H -0.213 1.213 18 H -0.212 1.212 19 C 0.006 3.994 20 H 0.063 0.937 21 C -0.198 4.198 22 C -0.069 4.069 23 C -0.110 4.110 24 C -0.143 4.143 25 C -0.145 4.145 26 C -0.142 4.142 27 C -0.139 4.139 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.106 0.894 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.113 0.887 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.033 0.967 41 H 0.029 0.971 42 H 0.066 0.934 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.083 0.917 46 H 0.150 0.850 47 H 0.137 0.863 48 H 0.134 0.866 49 H 0.135 0.865 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.126 21.633 -4.357 22.068 hybrid contribution -0.951 -0.373 0.840 1.323 sum -0.825 21.260 -3.517 21.564 Atomic orbital electron populations 1.22719 0.82233 1.02920 0.98884 1.88231 1.18750 1.26401 1.94728 1.23318 0.96811 0.85833 0.99599 1.22390 0.90780 1.01514 0.93060 1.62324 1.58660 1.02791 1.00500 1.22571 0.99348 0.85663 0.99855 1.21149 0.94571 0.96961 0.96602 0.92248 1.21633 0.96706 0.99283 1.00602 1.19052 0.95856 0.89079 0.96556 1.21306 1.27255 0.95212 1.10488 0.92744 1.25001 0.95433 0.98129 0.96046 1.69987 1.34755 1.13916 1.35224 0.86634 0.78640 0.80589 0.82712 1.19821 1.21258 1.21227 1.20578 0.96780 0.88972 0.93087 0.93658 1.21853 1.02192 1.01304 0.94446 1.19879 0.93931 0.94540 0.98596 1.21119 0.95659 0.96682 0.97497 1.21197 0.99542 0.92956 1.00571 1.21105 0.93686 0.98887 1.00869 1.21039 0.95949 0.96535 1.00686 1.21026 0.99188 0.92637 1.01074 0.94717 0.94910 0.89365 0.93855 0.93677 0.88717 0.89980 0.91921 0.92301 0.94238 0.93111 0.94421 0.96705 0.97148 0.93376 0.91672 0.92787 0.91674 0.85036 0.86303 0.86583 0.86529 0.86692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.36 -5.97 7.41 -35.23 -0.26 -6.23 16 3 C 0.02 0.31 5.73 37.16 0.21 0.52 16 4 C 0.05 0.72 5.18 -3.82 -0.02 0.70 16 5 N -0.52 -7.55 3.64 -228.03 -0.83 -8.38 16 6 C 0.05 0.92 3.53 -3.82 -0.01 0.91 16 7 C -0.07 -1.55 1.95 -90.62 -0.18 -1.73 16 8 H 0.06 1.30 5.94 -51.93 -0.31 0.99 16 9 C -0.12 -2.48 8.89 37.16 0.33 -2.15 16 10 C 0.03 0.84 4.45 -27.89 -0.12 0.72 16 11 C -0.50 -14.43 8.41 -34.44 -0.29 -14.72 16 12 H 0.05 1.53 7.06 -52.49 -0.37 1.16 16 13 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 14 N -0.90 -27.48 13.29 55.43 0.74 -26.75 16 15 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 16 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 C 0.11 1.44 1.68 -68.87 -0.12 1.32 16 20 H 0.05 0.60 6.15 -51.93 -0.32 0.28 16 21 C -0.14 -1.70 8.92 37.16 0.33 -1.37 16 22 C -0.07 -0.79 3.55 -104.62 -0.37 -1.16 16 23 C -0.09 -1.03 8.28 -39.58 -0.33 -1.36 16 24 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 25 C -0.13 -1.18 10.05 -39.58 -0.40 -1.58 16 26 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 27 C -0.12 -1.26 9.67 -39.58 -0.38 -1.64 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.57 5.97 -51.93 -0.31 0.26 16 33 H 0.09 1.53 5.85 -51.93 -0.30 1.22 16 34 H 0.08 1.06 6.40 -51.93 -0.33 0.73 16 35 H 0.06 1.13 6.19 -51.93 -0.32 0.81 16 36 H 0.06 1.12 5.42 -51.93 -0.28 0.84 16 37 H 0.04 0.69 7.75 -51.93 -0.40 0.29 16 38 H 0.05 1.08 6.95 -51.93 -0.36 0.72 16 39 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.06 0.84 6.37 -51.93 -0.33 0.51 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.80 8.05 -51.93 -0.42 0.38 16 46 H 0.13 1.56 7.93 -52.49 -0.42 1.14 16 47 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 48 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 49 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 50 H 0.12 1.07 7.99 -52.49 -0.42 0.65 16 LS Contribution 383.68 15.07 5.78 5.78 Total: -1.00 -30.80 383.68 -9.40 -40.20 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -8.68 Total: 0.00 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -1.12 Total: -21.76 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: -0.09 Total: -35.13 kcal Atomic # 8 Polarization: -5.97 SS G_CDS: -0.26 Total: -6.23 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.80 -9.40 -40.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602443601.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.811 kcal (2) G-P(sol) polarization free energy of solvation -30.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds