Wall clock time and date at job start Tue Mar 31 2020 08:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35899 * 117.00317 * 2 1 4 4 C 1.38730 * 120.06137 * 180.02562 * 3 2 1 5 5 C 1.38139 * 119.94877 * 179.97438 * 4 3 2 6 6 C 1.38260 * 120.05355 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.94588 * 179.97438 * 6 5 4 8 8 H 1.09008 * 109.46948 * 0.02562 * 7 6 5 9 9 C 1.52999 * 109.47651 * 240.00224 * 7 6 5 10 10 C 1.53001 * 109.47249 * 119.99701 * 7 6 5 11 11 C 1.53002 * 109.47236 * 185.00496 * 10 7 6 12 12 N 1.46897 * 109.47032 * 180.02562 * 11 10 7 13 13 C 1.46896 * 111.00246 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.47357 * 180.02562 * 13 12 11 15 15 H 1.08998 * 109.47104 * 55.00451 * 14 13 12 16 16 C 1.52998 * 109.47026 * 294.99646 * 14 13 12 17 17 C 1.53002 * 109.46886 * 174.99797 * 14 13 12 18 18 C 1.50706 * 109.47153 * 184.99546 * 17 14 13 19 19 H 1.07998 * 119.99503 * 0.02562 * 18 17 14 20 20 C 1.37871 * 120.00434 * 180.02562 * 18 17 14 21 21 N 1.31516 * 119.99826 * 359.72891 * 20 18 17 22 22 Si 1.86800 * 120.00406 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47364 * 179.72558 * 22 20 18 24 24 H 1.48508 * 109.46883 * 299.72681 * 22 20 18 25 25 H 1.48497 * 109.46870 * 59.72491 * 22 20 18 26 26 C 1.38267 * 120.11568 * 0.27131 * 6 5 4 27 27 C 1.38150 * 120.05086 * 359.45261 * 26 6 5 28 28 H 1.09004 * 109.46836 * 300.00007 * 1 2 3 29 29 H 1.08994 * 109.47134 * 60.00217 * 1 2 3 30 30 H 1.09001 * 109.47296 * 180.02562 * 1 2 3 31 31 H 1.08006 * 120.02101 * 359.95402 * 4 3 2 32 32 H 1.08004 * 119.97455 * 180.02562 * 5 4 3 33 33 H 1.08998 * 109.47129 * 59.99653 * 9 7 6 34 34 H 1.08992 * 109.47278 * 180.02562 * 9 7 6 35 35 H 1.09000 * 109.46513 * 299.99918 * 9 7 6 36 36 H 1.08999 * 109.47106 * 65.00245 * 10 7 6 37 37 H 1.09002 * 109.47008 * 305.00264 * 10 7 6 38 38 H 1.08999 * 109.47278 * 59.99855 * 11 10 7 39 39 H 1.09002 * 109.46933 * 299.99814 * 11 10 7 40 40 H 1.00907 * 110.99976 * 56.04388 * 12 11 10 41 41 H 1.09001 * 109.47205 * 59.99991 * 13 12 11 42 42 H 1.09002 * 109.47023 * 300.00245 * 13 12 11 43 43 H 1.08990 * 109.47503 * 300.00380 * 16 14 13 44 44 H 1.09001 * 109.46970 * 60.00396 * 16 14 13 45 45 H 1.09003 * 109.46843 * 179.97438 * 16 14 13 46 46 H 1.09004 * 109.47178 * 65.00336 * 17 14 13 47 47 H 1.08993 * 109.47411 * 305.00018 * 17 14 13 48 48 H 0.97000 * 120.00236 * 0.27947 * 21 20 18 49 49 H 1.07991 * 119.97624 * 179.70730 * 26 6 5 50 50 H 1.08001 * 120.02571 * 180.27757 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0561 2.5169 -0.0011 6 6 3.3020 3.6757 -0.0005 7 6 3.9861 5.0185 -0.0005 8 1 5.0668 4.8756 -0.0015 9 6 3.5756 5.8001 1.2490 10 6 3.5745 5.8006 -1.2495 11 6 4.3630 7.1102 -1.3140 12 7 3.9674 7.8613 -2.5129 13 6 4.7054 9.1279 -2.6079 14 6 4.2668 9.8806 -3.8657 15 1 3.1844 10.0081 -3.8539 16 6 4.6729 9.0816 -5.1057 17 6 4.9417 11.2533 -3.8998 18 6 4.4169 12.0420 -5.0719 19 1 3.6758 11.6078 -5.7266 20 6 4.8828 13.3179 -5.3084 21 7 5.7813 13.8487 -4.5080 22 14 4.2317 14.2959 -6.7607 23 1 4.8824 15.6304 -6.7905 24 1 4.5327 13.5701 -8.0209 25 1 2.7626 14.4643 -6.6253 26 6 1.9211 3.6048 0.0062 27 6 1.2915 2.3751 0.0010 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 4.0208 0.3799 -0.0002 32 1 5.1346 2.5750 -0.0019 33 1 3.8688 5.2430 2.1387 34 1 4.0700 6.7714 1.2487 35 1 2.4950 5.9429 1.2494 36 1 2.5079 6.0204 -1.2054 37 1 3.7863 5.2048 -2.1374 38 1 5.4297 6.8903 -1.3581 39 1 4.1512 7.7059 -0.4261 40 1 2.9713 8.0216 -2.5268 41 1 5.7745 8.9224 -2.6612 42 1 4.4959 9.7373 -1.7287 43 1 5.7552 8.9541 -5.1174 44 1 4.1921 8.1037 -5.0813 45 1 4.3600 9.6177 -6.0018 46 1 6.0195 11.1259 -4.0012 47 1 4.7244 11.7881 -2.9754 48 1 6.1192 13.3411 -3.7537 49 1 1.3343 4.5113 0.0114 50 1 0.2129 2.3202 0.0017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602556721.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:49 Heat of formation + Delta-G solvation = -51.873632 kcal Electronic energy + Delta-G solvation = -23963.725236 eV Core-core repulsion = 20568.615341 eV Total energy + Delta-G solvation = -3395.109895 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.53545 -38.60416 -37.16463 -35.58106 -33.72909 -31.95488 -31.37243 -29.76371 -28.27161 -27.47450 -26.39019 -25.16222 -23.83634 -23.04876 -22.30706 -21.65033 -20.16891 -19.18608 -18.51095 -16.69088 -16.65851 -16.10106 -15.98206 -15.57781 -14.90628 -14.73545 -14.35239 -14.21490 -14.00695 -13.76821 -13.66031 -13.45297 -13.05475 -13.00977 -12.73521 -12.58494 -12.30431 -11.89358 -11.76880 -11.55715 -11.52423 -11.36375 -11.23992 -10.98571 -10.90732 -10.86236 -10.72252 -10.60629 -10.14835 -10.05939 -9.78747 -9.41251 -9.29512 -8.45036 -8.35844 -8.27419 -8.13203 -6.30176 -3.98021 1.04859 1.12714 2.91632 3.44940 3.46560 3.48690 3.67193 4.26062 4.42823 4.53180 4.56529 4.60071 4.66419 4.73454 4.82412 5.03611 5.06056 5.07534 5.11059 5.21387 5.22461 5.38464 5.43518 5.46498 5.55055 5.63747 5.68790 5.73975 5.78705 5.80706 5.90266 5.98548 6.07348 6.08799 6.11220 6.21479 6.35264 6.42117 6.46091 6.48029 6.62264 6.92242 7.04924 7.09475 7.14885 7.32304 7.44347 7.59143 7.66386 8.29731 8.52876 8.95049 9.73376 11.10203 Molecular weight = 305.21amu Principal moments of inertia in cm(-1) A = 0.030052 B = 0.001844 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.490582 B =15180.131623 C =15599.243066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.118 3.882 4 C -0.150 4.150 5 C -0.078 4.078 6 C -0.107 4.107 7 C -0.047 4.047 8 H 0.079 0.921 9 C -0.146 4.146 10 C -0.107 4.107 11 C 0.057 3.943 12 N -0.688 5.688 13 C 0.063 3.937 14 C -0.076 4.076 15 H 0.054 0.946 16 C -0.122 4.122 17 C 0.014 3.986 18 C -0.593 4.593 19 H 0.050 0.950 20 C 0.012 3.988 21 N -0.916 5.916 22 Si 1.068 2.932 23 H -0.283 1.283 24 H -0.288 1.288 25 H -0.289 1.289 26 C -0.073 4.073 27 C -0.206 4.206 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.099 0.901 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.028 0.972 40 H 0.336 0.664 41 H 0.065 0.935 42 H 0.022 0.978 43 H 0.038 0.962 44 H 0.043 0.957 45 H 0.054 0.946 46 H 0.007 0.993 47 H 0.003 0.997 48 H 0.267 0.733 49 H 0.124 0.876 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.643 -26.845 12.892 31.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.073 3.927 4 C -0.169 4.169 5 C -0.096 4.096 6 C -0.107 4.107 7 C -0.066 4.066 8 H 0.097 0.903 9 C -0.204 4.204 10 C -0.145 4.145 11 C -0.073 4.073 12 N -0.319 5.319 13 C -0.065 4.065 14 C -0.095 4.095 15 H 0.072 0.928 16 C -0.179 4.179 17 C -0.024 4.024 18 C -0.632 4.632 19 H 0.068 0.932 20 C -0.192 4.192 21 N -0.553 5.553 22 Si 0.896 3.104 23 H -0.209 1.209 24 H -0.215 1.215 25 H -0.215 1.215 26 C -0.091 4.091 27 C -0.224 4.224 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.117 0.883 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.046 0.954 40 H 0.153 0.847 41 H 0.083 0.917 42 H 0.040 0.960 43 H 0.057 0.943 44 H 0.062 0.938 45 H 0.073 0.927 46 H 0.025 0.975 47 H 0.021 0.979 48 H 0.078 0.922 49 H 0.142 0.858 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.003 -25.915 11.695 29.536 hybrid contribution -0.859 -0.845 1.534 1.951 sum -8.863 -26.759 13.229 31.138 Atomic orbital electron populations 1.23046 0.78412 1.03895 1.01399 1.86056 1.21377 1.27100 1.88874 1.19037 0.92405 0.84095 0.97134 1.20411 0.91352 0.98650 1.06467 1.20908 0.99845 0.90954 0.97863 1.19802 0.93530 0.94946 1.02421 1.20085 0.99769 0.91230 0.95559 0.90302 1.21917 1.01559 1.00060 0.96829 1.21621 0.99837 0.95812 0.97256 1.22010 0.99957 0.93978 0.91325 1.60509 1.10336 1.21794 1.39234 1.22147 0.98217 0.88230 0.97923 1.21062 0.99635 0.96092 0.92694 0.92753 1.21573 0.99913 0.98290 0.98134 1.19254 0.95361 0.90874 0.96893 1.22038 1.26381 1.01803 1.12946 0.93218 1.25831 0.95316 0.96029 1.01981 1.70780 1.28243 1.40223 1.16015 0.83564 0.75676 0.76139 0.75005 1.20866 1.21480 1.21545 1.20800 0.94127 0.96927 0.97263 1.21226 0.99958 0.92380 1.08873 0.92699 0.92592 0.88280 0.85326 0.85328 0.92702 0.91961 0.92624 0.92081 0.90931 0.91357 0.95398 0.84665 0.91676 0.95988 0.94279 0.93771 0.92682 0.97490 0.97902 0.92215 0.85805 0.85610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -2.92 10.50 -19.42 -0.20 -3.12 16 3 C 0.12 1.13 6.69 -39.22 -0.26 0.87 16 4 C -0.15 -1.38 9.99 -39.44 -0.39 -1.77 16 5 C -0.08 -0.68 9.66 -39.61 -0.38 -1.06 16 6 C -0.11 -0.97 4.78 -104.60 -0.50 -1.47 16 7 C -0.05 -0.41 2.56 -91.77 -0.23 -0.65 16 8 H 0.08 0.66 7.87 -51.92 -0.41 0.25 16 9 C -0.15 -1.20 8.76 37.16 0.33 -0.87 16 10 C -0.11 -1.07 4.69 -26.73 -0.13 -1.20 16 11 C 0.06 0.67 5.44 -3.82 -0.02 0.65 16 12 N -0.69 -10.02 5.96 -113.78 -0.68 -10.70 16 13 C 0.06 1.11 5.07 -3.83 -0.02 1.09 16 14 C -0.08 -1.59 2.48 -90.62 -0.22 -1.81 16 15 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 16 C -0.12 -2.45 8.89 37.16 0.33 -2.12 16 17 C 0.01 0.35 3.76 -27.88 -0.10 0.25 16 18 C -0.59 -17.03 8.41 -34.44 -0.29 -17.32 16 19 H 0.05 1.40 7.06 -52.49 -0.37 1.03 16 20 C 0.01 0.34 5.46 -17.82 -0.10 0.24 16 21 N -0.92 -28.51 13.65 55.43 0.76 -27.75 16 22 Si 1.07 25.70 29.90 -169.99 -5.08 20.62 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 26 C -0.07 -0.65 8.75 -39.60 -0.35 -1.00 16 27 C -0.21 -1.79 9.04 -39.43 -0.36 -2.15 16 28 H 0.05 0.24 7.66 -51.93 -0.40 -0.15 16 29 H 0.06 0.26 7.66 -51.93 -0.40 -0.13 16 30 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 32 H 0.13 0.90 7.94 -52.48 -0.42 0.49 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.52 6.56 -51.93 -0.34 0.18 16 35 H 0.05 0.44 7.37 -51.93 -0.38 0.06 16 36 H 0.06 0.59 7.58 -51.93 -0.39 0.20 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.03 0.33 6.56 -51.93 -0.34 -0.01 16 40 H 0.34 4.66 8.73 -39.29 -0.34 4.31 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.04 0.79 7.75 -51.93 -0.40 0.39 16 45 H 0.05 1.19 6.95 -51.93 -0.36 0.82 16 46 H 0.01 0.19 8.01 -51.93 -0.42 -0.23 16 47 H 0.00 0.07 8.00 -51.93 -0.42 -0.34 16 48 H 0.27 8.30 7.22 -40.82 -0.29 8.01 16 49 H 0.12 0.96 7.15 -52.49 -0.38 0.59 16 50 H 0.13 0.85 6.30 -52.49 -0.33 0.52 16 LS Contribution 395.16 15.07 5.95 5.95 Total: -1.00 -32.02 395.16 -9.95 -41.97 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -8.99 Total: 0.20 kcal Atomic # 6 Polarization: -25.46 SS G_CDS: -1.71 Total: -27.17 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.08 Total: -38.45 kcal Atomic # 8 Polarization: -2.92 SS G_CDS: -0.20 Total: -3.12 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.08 Total: 20.62 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.02 -9.95 -41.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602556721.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.903 kcal (2) G-P(sol) polarization free energy of solvation -32.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds