Wall clock time and date at job start Tue Mar 31 2020 08:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35899 * 117.00317 * 2 1 4 4 C 1.38730 * 120.06137 * 180.02562 * 3 2 1 5 5 C 1.38139 * 119.94877 * 179.97438 * 4 3 2 6 6 C 1.38260 * 120.05355 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.94588 * 179.97438 * 6 5 4 8 8 H 1.09008 * 109.46948 * 0.02562 * 7 6 5 9 9 C 1.52999 * 109.47651 * 240.00224 * 7 6 5 10 10 C 1.53001 * 109.47249 * 119.99701 * 7 6 5 11 11 C 1.53002 * 109.47236 * 185.00496 * 10 7 6 12 12 N 1.46897 * 109.47032 * 180.02562 * 11 10 7 13 13 C 1.46896 * 111.00246 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.47357 * 180.02562 * 13 12 11 15 15 H 1.08998 * 109.47104 * 55.00451 * 14 13 12 16 16 C 1.52998 * 109.47026 * 294.99646 * 14 13 12 17 17 C 1.53002 * 109.46886 * 174.99797 * 14 13 12 18 18 C 1.50706 * 109.47153 * 184.99546 * 17 14 13 19 19 H 1.07998 * 119.99503 * 0.02562 * 18 17 14 20 20 C 1.37871 * 120.00434 * 180.02562 * 18 17 14 21 21 N 1.31516 * 119.99826 * 359.72891 * 20 18 17 22 22 Si 1.86800 * 120.00406 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47364 * 179.72558 * 22 20 18 24 24 H 1.48508 * 109.46883 * 299.72681 * 22 20 18 25 25 H 1.48497 * 109.46870 * 59.72491 * 22 20 18 26 26 C 1.38267 * 120.11568 * 0.27131 * 6 5 4 27 27 C 1.38150 * 120.05086 * 359.45261 * 26 6 5 28 28 H 1.09004 * 109.46836 * 300.00007 * 1 2 3 29 29 H 1.08994 * 109.47134 * 60.00217 * 1 2 3 30 30 H 1.09001 * 109.47296 * 180.02562 * 1 2 3 31 31 H 1.08006 * 120.02101 * 359.95402 * 4 3 2 32 32 H 1.08004 * 119.97455 * 180.02562 * 5 4 3 33 33 H 1.08998 * 109.47129 * 59.99653 * 9 7 6 34 34 H 1.08992 * 109.47278 * 180.02562 * 9 7 6 35 35 H 1.09000 * 109.46513 * 299.99918 * 9 7 6 36 36 H 1.08999 * 109.47106 * 65.00245 * 10 7 6 37 37 H 1.09002 * 109.47008 * 305.00264 * 10 7 6 38 38 H 1.08999 * 109.47278 * 59.99855 * 11 10 7 39 39 H 1.09002 * 109.46933 * 299.99814 * 11 10 7 40 40 H 1.00907 * 110.99976 * 56.04388 * 12 11 10 41 41 H 1.09001 * 109.47205 * 59.99991 * 13 12 11 42 42 H 1.09002 * 109.47023 * 300.00245 * 13 12 11 43 43 H 1.08990 * 109.47503 * 300.00380 * 16 14 13 44 44 H 1.09001 * 109.46970 * 60.00396 * 16 14 13 45 45 H 1.09003 * 109.46843 * 179.97438 * 16 14 13 46 46 H 1.09004 * 109.47178 * 65.00336 * 17 14 13 47 47 H 1.08993 * 109.47411 * 305.00018 * 17 14 13 48 48 H 0.97000 * 120.00236 * 0.27947 * 21 20 18 49 49 H 1.07991 * 119.97624 * 179.70730 * 26 6 5 50 50 H 1.08001 * 120.02571 * 180.27757 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0561 2.5169 -0.0011 6 6 3.3020 3.6757 -0.0005 7 6 3.9861 5.0185 -0.0005 8 1 5.0668 4.8756 -0.0015 9 6 3.5756 5.8001 1.2490 10 6 3.5745 5.8006 -1.2495 11 6 4.3630 7.1102 -1.3140 12 7 3.9674 7.8613 -2.5129 13 6 4.7054 9.1279 -2.6079 14 6 4.2668 9.8806 -3.8657 15 1 3.1844 10.0081 -3.8539 16 6 4.6729 9.0816 -5.1057 17 6 4.9417 11.2533 -3.8998 18 6 4.4169 12.0420 -5.0719 19 1 3.6758 11.6078 -5.7266 20 6 4.8828 13.3179 -5.3084 21 7 5.7813 13.8487 -4.5080 22 14 4.2317 14.2959 -6.7607 23 1 4.8824 15.6304 -6.7905 24 1 4.5327 13.5701 -8.0209 25 1 2.7626 14.4643 -6.6253 26 6 1.9211 3.6048 0.0062 27 6 1.2915 2.3751 0.0010 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 4.0208 0.3799 -0.0002 32 1 5.1346 2.5750 -0.0019 33 1 3.8688 5.2430 2.1387 34 1 4.0700 6.7714 1.2487 35 1 2.4950 5.9429 1.2494 36 1 2.5079 6.0204 -1.2054 37 1 3.7863 5.2048 -2.1374 38 1 5.4297 6.8903 -1.3581 39 1 4.1512 7.7059 -0.4261 40 1 2.9713 8.0216 -2.5268 41 1 5.7745 8.9224 -2.6612 42 1 4.4959 9.7373 -1.7287 43 1 5.7552 8.9541 -5.1174 44 1 4.1921 8.1037 -5.0813 45 1 4.3600 9.6177 -6.0018 46 1 6.0195 11.1259 -4.0012 47 1 4.7244 11.7881 -2.9754 48 1 6.1192 13.3411 -3.7537 49 1 1.3343 4.5113 0.0114 50 1 0.2129 2.3202 0.0017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602556721.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:48 Heat of formation + Delta-G solvation = -69.312984 kcal Electronic energy + Delta-G solvation = -23964.481463 eV Core-core repulsion = 20568.615341 eV Total energy + Delta-G solvation = -3395.866122 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.210 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.15833 -39.32063 -38.45587 -36.75672 -35.25911 -33.67539 -32.00714 -30.57261 -29.22298 -28.30600 -27.98245 -26.56647 -25.01810 -24.10945 -23.59547 -22.49313 -21.20765 -20.56882 -19.10996 -18.85206 -17.29875 -16.97428 -16.64293 -16.45711 -15.98005 -15.79840 -15.60309 -15.56475 -15.35000 -14.89433 -14.56569 -14.34492 -14.29020 -13.96253 -13.71335 -13.52869 -13.39668 -13.22364 -13.00135 -12.82758 -12.79200 -12.50610 -12.40902 -12.12312 -12.05185 -11.95052 -11.86726 -11.66528 -11.55621 -11.54168 -11.36502 -11.27472 -10.55260 -10.51610 -9.94262 -9.33449 -9.02167 -8.65224 -6.34212 0.40272 0.45814 1.52730 1.61444 1.80391 2.39409 2.58231 2.78249 3.18727 3.21109 3.76655 3.80101 3.96565 4.00283 4.07658 4.19647 4.28986 4.32312 4.37144 4.37965 4.42637 4.45332 4.50594 4.53852 4.66669 4.70193 4.72359 4.76255 4.79923 4.82512 4.88749 4.99264 5.02092 5.07801 5.12183 5.15589 5.30901 5.32180 5.36343 5.37866 5.39610 5.47190 5.48760 5.64748 5.75590 5.84457 6.00779 6.12592 6.22478 6.45510 6.48174 6.62475 7.46718 8.75334 Molecular weight = 305.21amu Principal moments of inertia in cm(-1) A = 0.030052 B = 0.001844 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.490582 B =15180.131623 C =15599.243066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.339 6.339 3 C 0.105 3.895 4 C -0.164 4.164 5 C -0.083 4.083 6 C -0.115 4.115 7 C -0.041 4.041 8 H 0.082 0.918 9 C -0.144 4.144 10 C -0.097 4.097 11 C 0.058 3.942 12 N -0.688 5.688 13 C 0.077 3.923 14 C -0.069 4.069 15 H 0.053 0.947 16 C -0.112 4.112 17 C 0.015 3.985 18 C -0.605 4.605 19 H 0.053 0.947 20 C -0.044 4.044 21 N -0.941 5.941 22 Si 1.117 2.883 23 H -0.285 1.285 24 H -0.269 1.269 25 H -0.269 1.269 26 C -0.080 4.080 27 C -0.211 4.211 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.117 0.883 31 H 0.135 0.865 32 H 0.143 0.857 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.034 0.966 40 H 0.342 0.658 41 H 0.060 0.940 42 H 0.018 0.982 43 H 0.033 0.967 44 H 0.069 0.931 45 H 0.036 0.964 46 H -0.014 1.014 47 H -0.017 1.017 48 H 0.253 0.747 49 H 0.134 0.866 50 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.990 -27.955 12.664 32.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.253 6.253 3 C 0.060 3.940 4 C -0.183 4.183 5 C -0.101 4.101 6 C -0.116 4.116 7 C -0.060 4.060 8 H 0.101 0.899 9 C -0.201 4.201 10 C -0.134 4.134 11 C -0.071 4.071 12 N -0.319 5.319 13 C -0.052 4.052 14 C -0.088 4.088 15 H 0.071 0.929 16 C -0.170 4.170 17 C -0.022 4.022 18 C -0.643 4.643 19 H 0.071 0.929 20 C -0.241 4.241 21 N -0.579 5.579 22 Si 0.938 3.062 23 H -0.211 1.211 24 H -0.195 1.195 25 H -0.194 1.194 26 C -0.098 4.098 27 C -0.230 4.230 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.136 0.864 31 H 0.153 0.847 32 H 0.161 0.839 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.052 0.948 40 H 0.160 0.840 41 H 0.079 0.921 42 H 0.036 0.964 43 H 0.053 0.947 44 H 0.087 0.913 45 H 0.055 0.945 46 H 0.004 0.996 47 H 0.001 0.999 48 H 0.063 0.937 49 H 0.152 0.848 50 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.366 -27.063 11.482 30.854 hybrid contribution -0.464 -0.578 1.652 1.810 sum -9.830 -27.641 13.134 32.142 Atomic orbital electron populations 1.23302 0.76671 1.05443 1.02085 1.86031 1.23294 1.27102 1.88872 1.19260 0.92802 0.84611 0.97347 1.20632 0.91682 0.99206 1.06767 1.21118 1.00689 0.90782 0.97514 1.19888 0.93784 0.95065 1.02834 1.20009 0.99965 0.90950 0.95034 0.89940 1.21895 1.01730 0.99810 0.96706 1.21506 0.99800 0.94606 0.97530 1.22059 1.00173 0.94512 0.90309 1.60447 1.10520 1.19961 1.40959 1.21834 0.98225 0.89261 0.95870 1.20911 0.98930 0.93926 0.95034 0.92860 1.21473 0.99763 0.99051 0.96671 1.19199 0.94411 0.93507 0.95103 1.22444 1.26113 1.02239 1.13544 0.92921 1.27426 0.94852 0.97763 1.04027 1.70919 1.29935 1.40472 1.16604 0.82945 0.76156 0.74724 0.72401 1.21054 1.19457 1.19390 1.20990 0.94273 0.97427 0.97133 1.21442 1.00909 0.92088 1.08513 0.91833 0.92017 0.86432 0.84664 0.83944 0.92345 0.92246 0.92319 0.91537 0.91906 0.91576 0.94798 0.83959 0.92132 0.96427 0.94740 0.91253 0.94486 0.99576 0.99904 0.93722 0.84818 0.83973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.34 -5.89 10.50 -92.41 -0.97 -6.86 16 3 C 0.10 1.92 6.69 22.51 0.15 2.07 16 4 C -0.16 -2.91 9.99 22.36 0.22 -2.68 16 5 C -0.08 -1.37 9.66 22.25 0.22 -1.15 16 6 C -0.12 -1.92 4.78 -19.85 -0.09 -2.02 16 7 C -0.04 -0.63 2.56 -11.54 -0.03 -0.66 16 8 H 0.08 1.23 7.87 -2.38 -0.02 1.21 16 9 C -0.14 -2.10 8.76 71.98 0.63 -1.47 16 10 C -0.10 -1.74 4.69 30.60 0.14 -1.60 16 11 C 0.06 1.28 5.44 86.30 0.47 1.75 16 12 N -0.69 -18.83 5.96 -513.90 -3.06 -21.89 16 13 C 0.08 2.66 5.07 86.30 0.44 3.09 16 14 C -0.07 -2.87 2.48 -10.79 -0.03 -2.89 16 15 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 16 C -0.11 -4.40 8.89 71.98 0.64 -3.76 16 17 C 0.02 0.81 3.76 29.85 0.11 0.92 16 18 C -0.61 -34.97 8.41 25.60 0.22 -34.75 16 19 H 0.05 2.95 7.06 -2.91 -0.02 2.93 16 20 C -0.04 -2.60 5.46 84.65 0.46 -2.14 16 21 N -0.94 -59.61 13.65 21.45 0.29 -59.32 16 22 Si 1.12 51.10 29.90 68.60 2.05 53.15 16 23 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 24 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 25 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 26 C -0.08 -1.30 8.75 22.26 0.19 -1.11 16 27 C -0.21 -3.40 9.04 22.37 0.20 -3.20 16 28 H 0.06 0.47 7.66 -2.39 -0.02 0.45 16 29 H 0.06 0.49 7.66 -2.39 -0.02 0.47 16 30 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 32 H 0.14 1.81 7.94 -2.91 -0.02 1.79 16 33 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 0.90 6.56 -2.39 -0.02 0.88 16 35 H 0.06 0.81 7.37 -2.39 -0.02 0.80 16 36 H 0.07 1.14 7.58 -2.39 -0.02 1.12 16 37 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.03 0.73 6.56 -2.39 -0.02 0.71 16 40 H 0.34 8.77 8.73 -89.69 -0.78 7.99 16 41 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.07 2.36 7.75 -2.39 -0.02 2.34 16 45 H 0.04 1.55 6.95 -2.39 -0.02 1.54 16 46 H -0.01 -0.80 8.01 -2.39 -0.02 -0.82 16 47 H -0.02 -0.98 8.00 -2.39 -0.02 -1.00 16 48 H 0.25 16.28 7.22 -92.71 -0.67 15.61 16 49 H 0.13 1.82 7.15 -2.92 -0.02 1.80 16 50 H 0.14 1.68 6.30 -2.91 -0.02 1.66 16 Total: -1.00 -68.65 395.16 3.58 -65.07 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.21 Total: 18.16 kcal Atomic # 6 Polarization: -53.36 SS G_CDS: 5.06 Total: -48.30 kcal Atomic # 7 Polarization: -78.44 SS G_CDS: -2.77 Total: -81.21 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -0.97 Total: -6.86 kcal Atomic # 14 Polarization: 51.10 SS G_CDS: 2.05 Total: 53.15 kcal Total: -68.65 3.58 -65.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602556721.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.247 kcal (2) G-P(sol) polarization free energy of solvation -68.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds