Wall clock time and date at job start Tue Mar 31 2020 08:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47126 * 2 1 4 4 H 1.09000 * 109.46697 * 55.00356 * 3 2 1 5 5 C 1.52994 * 109.47275 * 295.00500 * 3 2 1 6 6 N 1.46504 * 109.47207 * 175.00058 * 3 2 1 7 7 N 1.40071 * 126.06665 * 59.97786 * 6 3 2 8 8 C 1.30864 * 108.35800 * 180.02562 * 7 6 3 9 9 C 1.40219 * 108.36614 * 0.22755 * 8 7 6 10 10 N 1.40801 * 126.07081 * 179.77345 * 9 8 7 11 11 C 1.46500 * 119.99590 * 354.65601 * 10 9 8 12 12 C 1.53004 * 109.46787 * 180.02562 * 11 10 9 13 13 H 1.08999 * 109.47166 * 304.99875 * 12 11 10 14 14 C 1.53002 * 109.47049 * 64.99520 * 12 11 10 15 15 C 1.53001 * 109.47107 * 184.99864 * 12 11 10 16 16 C 1.50696 * 109.47193 * 174.99875 * 15 12 11 17 17 H 1.08006 * 120.00211 * 359.97438 * 16 15 12 18 18 C 1.37872 * 120.00173 * 179.97438 * 16 15 12 19 19 N 1.31514 * 120.00308 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00014 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47497 * 89.99342 * 20 18 16 22 22 H 1.48504 * 109.47334 * 209.99852 * 20 18 16 23 23 H 1.48510 * 109.47002 * 329.99545 * 20 18 16 24 24 C 1.35707 * 107.86164 * 359.62507 * 9 8 7 25 25 C 1.50706 * 126.22373 * 180.13095 * 24 9 8 26 26 C 1.52996 * 117.49607 * 312.84914 * 25 24 9 27 27 C 1.52999 * 117.49901 * 244.22672 * 25 24 9 28 28 H 1.09000 * 109.46841 * 299.99592 * 1 2 3 29 29 H 1.09002 * 109.47270 * 59.99570 * 1 2 3 30 30 H 1.09000 * 109.46896 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46855 * 240.00954 * 2 1 3 32 32 H 1.08995 * 109.47914 * 120.00543 * 2 1 3 33 33 H 1.08995 * 109.47570 * 59.99798 * 5 3 2 34 34 H 1.09000 * 109.46845 * 179.97438 * 5 3 2 35 35 H 1.09000 * 109.47140 * 299.99584 * 5 3 2 36 36 H 1.08003 * 125.81592 * 179.97438 * 8 7 6 37 37 H 0.97004 * 119.99859 * 174.65178 * 10 9 8 38 38 H 1.09004 * 109.47065 * 299.99505 * 11 10 9 39 39 H 1.08998 * 109.47716 * 60.00064 * 11 10 9 40 40 H 1.09003 * 109.46489 * 180.02562 * 14 12 11 41 41 H 1.08995 * 109.47277 * 299.99934 * 14 12 11 42 42 H 1.08994 * 109.47110 * 60.00566 * 14 12 11 43 43 H 1.08996 * 109.46694 * 294.99570 * 15 12 11 44 44 H 1.09000 * 109.47227 * 54.99380 * 15 12 11 45 45 H 0.96997 * 120.00317 * 179.97438 * 19 18 16 46 46 H 1.08997 * 115.54629 * 98.55511 * 25 24 9 47 47 H 1.08989 * 117.50345 * 0.02562 * 26 25 24 48 48 H 1.09004 * 117.49222 * 145.02288 * 26 25 24 49 49 H 1.09002 * 117.49965 * 214.98070 * 27 25 24 50 50 H 1.09001 * 117.49762 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3072 6 7 3.5001 1.4443 0.1204 7 7 4.4018 0.8506 -0.7720 8 6 5.6161 1.0607 -0.3318 9 6 5.5330 1.7924 0.8615 10 7 6.6188 2.2165 1.6512 11 6 7.9805 1.7980 1.3096 12 6 8.9649 2.3914 2.3195 13 1 8.8392 3.4735 2.3566 14 6 8.6945 1.7989 3.7039 15 6 10.3960 2.0586 1.8928 16 6 11.3683 2.7451 2.8171 17 1 11.0021 3.3580 3.6276 18 6 12.7253 2.5909 2.6281 19 7 13.5738 3.1905 3.4344 20 14 13.3586 1.5316 1.2260 21 1 13.5364 2.3700 0.0133 22 1 14.6621 0.9317 1.6085 23 1 12.3808 0.4507 0.9414 24 6 4.2204 2.0220 1.1184 25 6 3.6624 2.7753 2.2984 26 6 4.2103 2.4252 3.6832 27 6 2.7959 1.9951 3.2890 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8898 33 1 0.5489 2.1253 -1.3968 34 1 1.9981 3.1544 -1.3070 35 1 2.0698 1.5877 -2.1491 36 1 6.5269 0.7240 -0.8046 37 1 6.4651 2.7859 2.4214 38 1 8.0440 0.7102 1.3371 39 1 8.2290 2.1513 0.3088 40 1 9.3955 2.2220 4.4234 41 1 7.6750 2.0360 4.0079 42 1 8.8202 0.7168 3.6669 43 1 10.5481 0.9804 1.9414 44 1 10.5602 2.4031 0.8718 45 1 14.5285 3.0817 3.3018 46 1 3.3983 3.8158 2.1095 47 1 4.9747 1.6503 3.7409 48 1 4.3069 3.2355 4.4059 49 1 1.9620 2.5224 3.7523 50 1 2.6299 0.9368 3.0875 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602581521.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:35 Heat of formation + Delta-G solvation = 79.254849 kcal Electronic energy + Delta-G solvation = -25380.605356 eV Core-core repulsion = 22023.474371 eV Total energy + Delta-G solvation = -3357.130986 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.20509 -37.20834 -37.01608 -36.25382 -33.61662 -31.98204 -31.23058 -29.54679 -28.34755 -27.21219 -25.46343 -24.80593 -23.23169 -22.83479 -22.24687 -21.73976 -19.80694 -19.41287 -18.86329 -17.10429 -16.80219 -15.85019 -15.69563 -15.15440 -14.96447 -14.59377 -14.50919 -14.30834 -13.94171 -13.70218 -13.35635 -13.09298 -12.92534 -12.59496 -12.36998 -12.24210 -12.09677 -11.99085 -11.84180 -11.76268 -11.69370 -11.37208 -11.15442 -11.01207 -10.87840 -10.83797 -10.67686 -10.41771 -10.24388 -10.04331 -9.73224 -9.60622 -9.48875 -9.08379 -9.06684 -8.51816 -6.75010 -6.02437 -3.99806 1.96025 2.47900 3.12761 3.32577 3.40238 3.43741 3.56044 4.00063 4.32291 4.41116 4.47091 4.56200 4.69195 4.70780 4.77183 4.90651 5.03240 5.11723 5.17741 5.26785 5.31309 5.38596 5.40994 5.53579 5.54996 5.62632 5.63686 5.66628 5.71757 5.73469 5.82597 5.88774 5.94009 5.96334 5.98665 6.09224 6.22405 6.36770 6.44329 6.58725 6.79153 6.91355 7.05528 7.17552 7.25363 7.44808 7.72318 7.81707 7.89279 8.28045 8.55800 9.02432 9.60283 11.10847 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.024710 B = 0.002814 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.893655 B = 9949.519486 C =10697.313388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.131 4.131 3 C 0.171 3.829 4 H 0.098 0.902 5 C -0.162 4.162 6 N -0.361 5.361 7 N -0.274 5.274 8 C 0.006 3.994 9 C 0.086 3.914 10 N -0.738 5.738 11 C 0.137 3.863 12 C -0.086 4.086 13 H 0.066 0.934 14 C -0.131 4.131 15 C -0.007 4.007 16 C -0.514 4.514 17 H 0.073 0.927 18 C 0.065 3.935 19 N -0.905 5.905 20 Si 0.878 3.122 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.265 1.265 24 C 0.011 3.989 25 C -0.085 4.085 26 C -0.161 4.161 27 C -0.174 4.174 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.178 0.822 37 H 0.396 0.604 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.066 0.934 41 H 0.033 0.967 42 H 0.044 0.956 43 H 0.017 0.983 44 H 0.012 0.988 45 H 0.262 0.738 46 H 0.112 0.888 47 H 0.102 0.898 48 H 0.101 0.899 49 H 0.097 0.903 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.653 -3.651 -4.697 28.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.170 4.170 3 C 0.069 3.931 4 H 0.116 0.884 5 C -0.220 4.220 6 N -0.150 5.150 7 N -0.097 5.097 8 C -0.182 4.182 9 C -0.022 4.022 10 N -0.376 5.376 11 C 0.013 3.987 12 C -0.104 4.104 13 H 0.084 0.916 14 C -0.189 4.189 15 C -0.044 4.044 16 C -0.552 4.552 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.544 5.544 20 Si 0.705 3.295 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.190 1.190 24 C -0.117 4.117 25 C -0.104 4.104 26 C -0.199 4.199 27 C -0.211 4.211 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.195 0.805 37 H 0.232 0.768 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.052 0.948 42 H 0.063 0.937 43 H 0.036 0.964 44 H 0.030 0.970 45 H 0.072 0.928 46 H 0.130 0.870 47 H 0.121 0.879 48 H 0.120 0.880 49 H 0.115 0.885 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -28.124 -4.249 -5.699 29.008 hybrid contribution 1.093 0.080 0.148 1.106 sum -27.031 -4.169 -5.551 27.908 Atomic orbital electron populations 1.21802 0.94730 1.02254 1.02090 1.21863 0.96113 0.95528 1.03462 1.21158 0.74839 0.97438 0.99690 0.88415 1.22183 1.01670 1.01005 0.97159 1.48175 1.05084 1.43640 1.18131 1.77105 0.98501 1.18952 1.15096 1.23489 0.96140 1.02849 0.95747 1.17470 0.87133 1.03109 0.94527 1.44103 1.02680 1.58494 1.32306 1.21420 0.80675 0.98228 0.98395 1.21201 0.95619 0.99668 0.93956 0.91564 1.21705 0.99270 1.00317 0.97575 1.19567 0.91356 0.96912 0.96615 1.21102 0.90083 1.29840 1.14157 0.90857 1.25023 0.97035 0.95456 0.96060 1.69910 1.02319 1.43984 1.38185 0.86809 0.78286 0.81445 0.82925 1.20357 1.21511 1.18956 1.19167 0.90050 1.07603 0.94855 1.20183 1.04928 0.98103 0.87236 1.23009 0.97088 1.03898 0.95908 1.22978 0.94602 1.00640 1.02911 0.92508 0.92145 0.92194 0.90668 0.91601 0.90898 0.92216 0.91224 0.80539 0.76844 0.93475 0.93450 0.91492 0.94832 0.93672 0.96428 0.96955 0.92809 0.87012 0.87943 0.88037 0.88493 0.88930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.67 37.16 0.36 -0.50 16 2 C -0.13 -1.08 5.66 -26.73 -0.15 -1.23 16 3 C 0.17 1.54 3.14 -67.93 -0.21 1.33 16 4 H 0.10 0.77 6.80 -51.93 -0.35 0.41 16 5 C -0.16 -1.32 9.21 37.15 0.34 -0.98 16 6 N -0.36 -4.45 3.31 -50.35 -0.17 -4.62 16 7 N -0.27 -3.93 12.42 30.70 0.38 -3.55 16 8 C 0.01 0.08 11.34 -17.22 -0.20 -0.11 16 9 C 0.09 1.24 6.83 -83.90 -0.57 0.67 16 10 N -0.74 -10.71 5.32 -58.79 -0.31 -11.02 16 11 C 0.14 2.21 5.04 -4.04 -0.02 2.19 16 12 C -0.09 -1.61 2.37 -90.62 -0.22 -1.83 16 13 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 14 C -0.13 -2.34 8.88 37.16 0.33 -2.01 16 15 C -0.01 -0.15 3.52 -27.88 -0.10 -0.25 16 16 C -0.51 -14.24 8.96 -34.44 -0.31 -14.55 16 17 H 0.07 2.18 7.30 -52.48 -0.38 1.79 16 18 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 19 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 20 Si 0.88 21.64 27.47 -169.99 -4.67 16.98 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 24 C 0.01 0.14 6.44 -81.66 -0.53 -0.38 16 25 C -0.08 -0.85 5.33 -91.77 -0.49 -1.34 16 26 C -0.16 -1.52 8.97 -26.73 -0.24 -1.76 16 27 C -0.17 -1.44 9.63 -26.73 -0.26 -1.70 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.30 6.57 -51.93 -0.34 -0.04 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.42 6.56 -51.93 -0.34 0.08 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.18 2.33 7.91 -52.48 -0.42 1.91 16 37 H 0.40 5.48 6.28 -40.82 -0.26 5.22 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 1.34 6.95 -51.93 -0.36 0.98 16 41 H 0.03 0.50 7.18 -51.93 -0.37 0.13 16 42 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 44 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 45 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 46 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.10 1.14 7.87 -51.94 -0.41 0.73 16 48 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 49 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 394.15 15.07 5.94 5.94 Total: -1.00 -30.87 394.15 -9.49 -40.36 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -9.08 Total: 3.54 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: -2.35 Total: -20.67 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: 0.68 Total: -46.15 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.87 -9.49 -40.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602581521.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.615 kcal (2) G-P(sol) polarization free energy of solvation -30.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds