Wall clock time and date at job start Tue Mar 31 2020 08:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47126 * 2 1 4 4 H 1.09000 * 109.46697 * 55.00356 * 3 2 1 5 5 C 1.52994 * 109.47275 * 295.00500 * 3 2 1 6 6 N 1.46504 * 109.47207 * 175.00058 * 3 2 1 7 7 N 1.40071 * 126.06665 * 59.97786 * 6 3 2 8 8 C 1.30864 * 108.35800 * 180.02562 * 7 6 3 9 9 C 1.40219 * 108.36614 * 0.22755 * 8 7 6 10 10 N 1.40801 * 126.07081 * 179.77345 * 9 8 7 11 11 C 1.46500 * 119.99590 * 354.65601 * 10 9 8 12 12 C 1.53004 * 109.46787 * 180.02562 * 11 10 9 13 13 H 1.08999 * 109.47166 * 304.99875 * 12 11 10 14 14 C 1.53002 * 109.47049 * 64.99520 * 12 11 10 15 15 C 1.53001 * 109.47107 * 184.99864 * 12 11 10 16 16 C 1.50696 * 109.47193 * 174.99875 * 15 12 11 17 17 H 1.08006 * 120.00211 * 359.97438 * 16 15 12 18 18 C 1.37872 * 120.00173 * 179.97438 * 16 15 12 19 19 N 1.31514 * 120.00308 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00014 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47497 * 89.99342 * 20 18 16 22 22 H 1.48504 * 109.47334 * 209.99852 * 20 18 16 23 23 H 1.48510 * 109.47002 * 329.99545 * 20 18 16 24 24 C 1.35707 * 107.86164 * 359.62507 * 9 8 7 25 25 C 1.50706 * 126.22373 * 180.13095 * 24 9 8 26 26 C 1.52996 * 117.49607 * 312.84914 * 25 24 9 27 27 C 1.52999 * 117.49901 * 244.22672 * 25 24 9 28 28 H 1.09000 * 109.46841 * 299.99592 * 1 2 3 29 29 H 1.09002 * 109.47270 * 59.99570 * 1 2 3 30 30 H 1.09000 * 109.46896 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46855 * 240.00954 * 2 1 3 32 32 H 1.08995 * 109.47914 * 120.00543 * 2 1 3 33 33 H 1.08995 * 109.47570 * 59.99798 * 5 3 2 34 34 H 1.09000 * 109.46845 * 179.97438 * 5 3 2 35 35 H 1.09000 * 109.47140 * 299.99584 * 5 3 2 36 36 H 1.08003 * 125.81592 * 179.97438 * 8 7 6 37 37 H 0.97004 * 119.99859 * 174.65178 * 10 9 8 38 38 H 1.09004 * 109.47065 * 299.99505 * 11 10 9 39 39 H 1.08998 * 109.47716 * 60.00064 * 11 10 9 40 40 H 1.09003 * 109.46489 * 180.02562 * 14 12 11 41 41 H 1.08995 * 109.47277 * 299.99934 * 14 12 11 42 42 H 1.08994 * 109.47110 * 60.00566 * 14 12 11 43 43 H 1.08996 * 109.46694 * 294.99570 * 15 12 11 44 44 H 1.09000 * 109.47227 * 54.99380 * 15 12 11 45 45 H 0.96997 * 120.00317 * 179.97438 * 19 18 16 46 46 H 1.08997 * 115.54629 * 98.55511 * 25 24 9 47 47 H 1.08989 * 117.50345 * 0.02562 * 26 25 24 48 48 H 1.09004 * 117.49222 * 145.02288 * 26 25 24 49 49 H 1.09002 * 117.49965 * 214.98070 * 27 25 24 50 50 H 1.09001 * 117.49762 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3072 6 7 3.5001 1.4443 0.1204 7 7 4.4018 0.8506 -0.7720 8 6 5.6161 1.0607 -0.3318 9 6 5.5330 1.7924 0.8615 10 7 6.6188 2.2165 1.6512 11 6 7.9805 1.7980 1.3096 12 6 8.9649 2.3914 2.3195 13 1 8.8392 3.4735 2.3566 14 6 8.6945 1.7989 3.7039 15 6 10.3960 2.0586 1.8928 16 6 11.3683 2.7451 2.8171 17 1 11.0021 3.3580 3.6276 18 6 12.7253 2.5909 2.6281 19 7 13.5738 3.1905 3.4344 20 14 13.3586 1.5316 1.2260 21 1 13.5364 2.3700 0.0133 22 1 14.6621 0.9317 1.6085 23 1 12.3808 0.4507 0.9414 24 6 4.2204 2.0220 1.1184 25 6 3.6624 2.7753 2.2984 26 6 4.2103 2.4252 3.6832 27 6 2.7959 1.9951 3.2890 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8898 33 1 0.5489 2.1253 -1.3968 34 1 1.9981 3.1544 -1.3070 35 1 2.0698 1.5877 -2.1491 36 1 6.5269 0.7240 -0.8046 37 1 6.4651 2.7859 2.4214 38 1 8.0440 0.7102 1.3371 39 1 8.2290 2.1513 0.3088 40 1 9.3955 2.2220 4.4234 41 1 7.6750 2.0360 4.0079 42 1 8.8202 0.7168 3.6669 43 1 10.5481 0.9804 1.9414 44 1 10.5602 2.4031 0.8718 45 1 14.5285 3.0817 3.3018 46 1 3.3983 3.8158 2.1095 47 1 4.9747 1.6503 3.7409 48 1 4.3069 3.2355 4.4059 49 1 1.9620 2.5224 3.7523 50 1 2.6299 0.9368 3.0875 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602581521.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:34 Heat of formation + Delta-G solvation = 62.879971 kcal Electronic energy + Delta-G solvation = -25381.315424 eV Core-core repulsion = 22023.474371 eV Total energy + Delta-G solvation = -3357.841054 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.18541 -38.37293 -37.84105 -37.23628 -35.20000 -33.79658 -32.08913 -30.48295 -29.66769 -28.66046 -26.80355 -25.55060 -24.30044 -24.06001 -23.24929 -22.61883 -21.02132 -20.52940 -19.99990 -18.90024 -17.97172 -16.74605 -16.69302 -16.41693 -15.99866 -15.83878 -15.57531 -15.38803 -15.24290 -14.85578 -14.49105 -14.32770 -14.11276 -13.91228 -13.53873 -13.49455 -13.13191 -12.86000 -12.73728 -12.67510 -12.65547 -12.55159 -12.37833 -12.15876 -12.06816 -11.82098 -11.78991 -11.62464 -11.54837 -11.44315 -11.31416 -11.08620 -11.05711 -10.72167 -10.69194 -10.02688 -8.24453 -7.83333 -6.26435 0.96479 1.38085 1.39543 1.51089 1.60173 2.05585 2.39328 2.76855 2.93308 3.11237 3.58110 3.61386 3.89056 3.95812 4.00592 4.06603 4.11984 4.22319 4.24542 4.31356 4.40544 4.43502 4.51967 4.61243 4.64458 4.77664 4.79630 4.82933 4.88488 4.89565 4.98912 5.02693 5.03775 5.07501 5.09253 5.11141 5.18436 5.26496 5.28621 5.30976 5.38435 5.41825 5.51073 5.58494 5.71048 5.73067 6.26954 6.34172 6.61210 6.80804 6.83882 7.18724 7.37127 8.92023 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.024710 B = 0.002814 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.893655 B = 9949.519486 C =10697.313388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.125 4.125 3 C 0.162 3.838 4 H 0.117 0.883 5 C -0.157 4.157 6 N -0.356 5.356 7 N -0.296 5.296 8 C -0.011 4.011 9 C 0.059 3.941 10 N -0.736 5.736 11 C 0.153 3.847 12 C -0.078 4.078 13 H 0.057 0.943 14 C -0.124 4.124 15 C -0.005 4.005 16 C -0.516 4.516 17 H 0.038 0.962 18 C 0.002 3.998 19 N -0.953 5.953 20 Si 0.945 3.055 21 H -0.269 1.269 22 H -0.288 1.288 23 H -0.246 1.246 24 C 0.021 3.979 25 C -0.096 4.096 26 C -0.166 4.166 27 C -0.154 4.154 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.101 0.899 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.182 0.818 37 H 0.399 0.601 38 H 0.049 0.951 39 H 0.046 0.954 40 H 0.036 0.964 41 H 0.062 0.938 42 H 0.046 0.954 43 H 0.020 0.980 44 H 0.017 0.983 45 H 0.264 0.736 46 H 0.125 0.875 47 H 0.083 0.917 48 H 0.116 0.884 49 H 0.123 0.877 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.532 -4.210 -5.388 31.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.163 4.163 3 C 0.061 3.939 4 H 0.134 0.866 5 C -0.215 4.215 6 N -0.145 5.145 7 N -0.120 5.120 8 C -0.197 4.197 9 C -0.049 4.049 10 N -0.375 5.375 11 C 0.028 3.972 12 C -0.097 4.097 13 H 0.075 0.925 14 C -0.181 4.181 15 C -0.043 4.043 16 C -0.554 4.554 17 H 0.056 0.944 18 C -0.195 4.195 19 N -0.595 5.595 20 Si 0.769 3.231 21 H -0.195 1.195 22 H -0.214 1.214 23 H -0.169 1.169 24 C -0.108 4.108 25 C -0.116 4.116 26 C -0.203 4.203 27 C -0.191 4.191 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.120 0.880 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.199 0.801 37 H 0.235 0.765 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.039 0.961 44 H 0.035 0.965 45 H 0.073 0.927 46 H 0.143 0.857 47 H 0.102 0.898 48 H 0.135 0.865 49 H 0.141 0.859 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -31.052 -4.819 -6.408 32.070 hybrid contribution 1.870 0.305 0.431 1.943 sum -29.182 -4.514 -5.977 30.128 Atomic orbital electron populations 1.21782 0.92420 1.02933 1.03204 1.21792 0.97999 0.94541 1.02001 1.21537 0.73095 0.98359 1.00919 0.86559 1.22153 1.03392 1.00017 0.95896 1.48565 1.06128 1.42405 1.17384 1.77063 0.98833 1.19970 1.16107 1.23656 0.96536 1.03366 0.96184 1.17626 0.87708 1.04574 0.94971 1.43840 1.02016 1.58975 1.32675 1.21091 0.80967 0.97969 0.97188 1.21028 0.94045 0.99369 0.95232 0.92499 1.21607 1.00206 1.00050 0.96237 1.19524 0.92806 0.96342 0.95667 1.21426 0.91161 1.29069 1.13741 0.94419 1.25966 0.97437 0.97091 0.98966 1.70064 1.02721 1.46156 1.40544 0.85736 0.77885 0.80067 0.79432 1.19456 1.21373 1.16895 1.19642 0.89780 1.06228 0.95169 1.20284 1.06222 0.98626 0.86444 1.23023 0.97532 1.03983 0.95811 1.23039 0.94716 1.00263 1.01106 0.91190 0.91176 0.91821 0.92440 0.92771 0.88039 0.92915 0.92919 0.80143 0.76499 0.93322 0.93564 0.94444 0.91903 0.93465 0.96120 0.96461 0.92739 0.85747 0.89803 0.86544 0.85858 0.89638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.67 71.98 0.70 -0.57 16 2 C -0.12 -1.85 5.66 30.60 0.17 -1.68 16 3 C 0.16 2.60 3.14 44.99 0.14 2.74 16 4 H 0.12 1.45 6.80 -2.39 -0.02 1.44 16 5 C -0.16 -2.26 9.21 71.98 0.66 -1.60 16 6 N -0.36 -8.37 3.31 -313.23 -1.04 -9.41 16 7 N -0.30 -8.43 12.42 -56.77 -0.71 -9.14 16 8 C -0.01 -0.31 11.34 85.32 0.97 0.66 16 9 C 0.06 1.66 6.83 37.59 0.26 1.91 16 10 N -0.74 -20.67 5.32 -339.92 -1.81 -22.48 16 11 C 0.15 4.79 5.04 86.38 0.43 5.23 16 12 C -0.08 -2.91 2.37 -10.79 -0.03 -2.93 16 13 H 0.06 2.22 8.14 -2.39 -0.02 2.21 16 14 C -0.12 -4.38 8.88 71.98 0.64 -3.74 16 15 C -0.01 -0.25 3.52 29.85 0.10 -0.15 16 16 C -0.52 -29.24 8.96 25.60 0.23 -29.01 16 17 H 0.04 2.34 7.30 -2.91 -0.02 2.32 16 18 C 0.00 0.09 5.47 84.65 0.46 0.55 16 19 N -0.95 -60.05 13.96 21.45 0.30 -59.75 16 20 Si 0.94 44.56 27.47 68.60 1.88 46.44 16 21 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 23 H -0.25 -10.71 6.54 99.48 0.65 -10.06 16 24 C 0.02 0.51 6.44 41.33 0.27 0.78 16 25 C -0.10 -1.69 5.33 -11.54 -0.06 -1.75 16 26 C -0.17 -2.76 8.97 30.59 0.27 -2.48 16 27 C -0.15 -2.08 9.63 30.59 0.29 -1.79 16 28 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.07 0.48 6.57 -2.39 -0.02 0.47 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.10 0.86 6.56 -2.39 -0.02 0.85 16 34 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.18 4.78 7.91 -2.91 -0.02 4.75 16 37 H 0.40 10.58 6.28 -92.71 -0.58 10.00 16 38 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.04 1.52 6.95 -2.39 -0.02 1.51 16 41 H 0.06 1.83 7.18 -2.39 -0.02 1.81 16 42 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.02 0.93 7.20 -2.39 -0.02 0.92 16 44 H 0.02 0.77 7.57 -2.39 -0.02 0.75 16 45 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 46 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.08 1.74 7.87 -2.39 -0.02 1.72 16 48 H 0.12 1.58 8.14 -2.38 -0.02 1.56 16 49 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -68.38 394.15 4.41 -63.97 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: 0.26 Total: 24.18 kcal Atomic # 6 Polarization: -39.33 SS G_CDS: 5.52 Total: -33.82 kcal Atomic # 7 Polarization: -97.52 SS G_CDS: -3.25 Total: -100.77 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.88 Total: 46.44 kcal Total: -68.38 4.41 -63.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602581521.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.847 kcal (2) G-P(sol) polarization free energy of solvation -68.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds