Wall clock time and date at job start Tue Mar 31 2020 08:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08992 * 109.47108 * 2 1 4 4 C 1.52998 * 109.47120 * 239.99689 * 2 1 3 5 5 C 1.50705 * 109.47124 * 65.00056 * 4 2 1 6 6 H 1.08008 * 119.99452 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00199 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99811 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 119.99985 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47309 * 89.99936 * 9 7 5 11 11 H 1.48498 * 109.47165 * 209.99849 * 9 7 5 12 12 H 1.48502 * 109.47038 * 329.99691 * 9 7 5 13 13 C 1.52997 * 109.46628 * 120.00242 * 2 1 3 14 14 N 1.46904 * 109.47399 * 294.99263 * 13 2 1 15 15 C 1.46897 * 111.00092 * 176.10855 * 14 13 2 16 16 H 1.08999 * 109.47456 * 355.64351 * 15 14 13 17 17 C 1.50706 * 109.47152 * 235.63926 * 15 14 13 18 18 C 1.38235 * 119.99795 * 319.73271 * 17 15 14 19 19 C 1.38233 * 119.99481 * 179.78797 * 18 17 15 20 20 C 1.38235 * 120.00179 * 0.43746 * 19 18 17 21 21 C 1.38240 * 120.00068 * 359.81781 * 20 19 18 22 22 C 1.38229 * 119.99587 * 140.00168 * 17 15 14 23 23 C 1.53001 * 109.46655 * 115.64386 * 15 14 13 24 24 C 1.53004 * 109.47233 * 299.62196 * 23 15 14 25 25 C 1.52993 * 109.47626 * 59.62561 * 23 15 14 26 26 C 1.53003 * 109.46771 * 179.62512 * 23 15 14 27 27 O 1.42896 * 109.47139 * 57.27552 * 26 23 15 28 28 H 1.08992 * 109.47108 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46770 * 59.99536 * 1 2 3 30 30 H 1.08994 * 109.46787 * 300.00207 * 1 2 3 31 31 H 1.08996 * 109.47594 * 185.00255 * 4 2 1 32 32 H 1.09005 * 109.47280 * 305.00832 * 4 2 1 33 33 H 0.96995 * 119.99707 * 180.02562 * 8 7 5 34 34 H 1.09004 * 109.47832 * 54.99825 * 13 2 1 35 35 H 1.09005 * 109.47118 * 174.99853 * 13 2 1 36 36 H 1.00896 * 111.00139 * 300.06754 * 14 13 2 37 37 H 1.08004 * 120.00174 * 359.97438 * 18 17 15 38 38 H 1.08000 * 120.00097 * 180.26972 * 19 18 17 39 39 H 1.08002 * 120.00307 * 179.83058 * 20 19 18 40 40 H 1.07989 * 120.00120 * 180.02562 * 21 20 19 41 41 H 1.07997 * 120.00760 * 359.97438 * 22 17 15 42 42 H 1.08998 * 109.46645 * 54.30380 * 24 23 15 43 43 H 1.08993 * 109.47482 * 174.30751 * 24 23 15 44 44 H 1.09000 * 109.46778 * 294.30824 * 24 23 15 45 45 H 1.09004 * 109.47163 * 59.99463 * 25 23 15 46 46 H 1.08994 * 109.47552 * 180.02562 * 25 23 15 47 47 H 1.09005 * 109.47202 * 299.99847 * 25 23 15 48 48 H 1.09006 * 109.47086 * 177.27523 * 26 23 15 49 49 H 1.08997 * 109.47280 * 297.26816 * 26 23 15 50 50 H 0.96708 * 114.00016 * 184.94865 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0807 0.9746 -2.3756 7 6 1.9933 -0.4018 -3.7283 8 7 1.6458 0.2777 -4.7994 9 14 2.9636 -1.9884 -3.9028 10 1 2.0244 -3.1327 -4.0200 11 1 3.8126 -1.9182 -5.1191 12 1 3.8252 -2.1756 -2.7079 13 6 2.0399 -0.7213 1.2492 14 7 1.6514 0.0374 2.4457 15 6 2.0442 -0.6729 3.6700 16 1 2.4680 -1.6423 3.4077 17 6 0.8335 -0.8739 4.5446 18 6 -0.1013 0.1363 4.6737 19 6 -1.2140 -0.0497 5.4724 20 6 -1.3874 -1.2425 6.1492 21 6 -0.4499 -2.2507 6.0243 22 6 0.6606 -2.0663 5.2221 23 6 3.0879 0.1522 4.4257 24 6 4.3209 0.3484 3.5412 25 6 2.4963 1.5165 4.7858 26 6 3.4901 -0.5832 5.7056 27 8 3.9839 -1.8823 5.3734 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8899 31 1 3.1263 -0.7996 -1.2056 32 1 1.6053 -1.7199 -1.2951 33 1 1.8930 -0.0452 -5.6799 34 1 1.6053 -1.7199 1.2952 35 1 3.1263 -0.7996 1.2056 36 1 2.0415 0.9677 2.4264 37 1 0.0363 1.0697 4.1481 38 1 -1.9466 0.7378 5.5699 39 1 -2.2554 -1.3869 6.7755 40 1 -0.5856 -3.1827 6.5527 41 1 1.3929 -2.8541 5.1244 42 1 4.0186 0.7805 2.5873 43 1 5.0216 1.0192 4.0382 44 1 4.8007 -0.6149 3.3681 45 1 1.6179 1.3767 5.4159 46 1 3.2399 2.1044 5.3237 47 1 2.2097 2.0404 3.8739 48 1 4.2686 -0.0190 6.2194 49 1 2.6217 -0.6801 6.3572 50 1 4.1872 -2.4340 6.1412 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602637113.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:17 Heat of formation + Delta-G solvation = -43.072954 kcal Electronic energy + Delta-G solvation = -26266.176546 eV Core-core repulsion = 22871.448277 eV Total energy + Delta-G solvation = -3394.728269 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.210 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.32386 -38.05228 -36.69166 -35.28260 -32.89393 -31.83968 -30.96052 -30.77785 -27.49877 -27.29119 -26.44143 -25.90879 -24.09617 -22.46150 -21.87099 -21.27406 -19.41578 -18.62994 -17.57362 -16.84064 -16.57712 -16.17740 -15.40669 -15.22785 -14.83803 -14.42241 -14.21914 -13.92603 -13.68954 -13.54237 -13.35495 -13.05774 -12.74796 -12.66976 -12.49954 -12.33043 -12.26561 -12.08650 -11.61065 -11.54551 -11.51484 -11.04962 -10.93497 -10.92213 -10.76489 -10.74026 -10.62679 -10.32748 -10.12784 -9.73564 -9.69115 -9.35312 -9.01008 -8.82959 -8.57513 -8.47421 -8.11765 -5.98052 -3.94489 1.41677 1.47375 3.34838 3.41943 3.46096 3.79980 4.02104 4.32129 4.50781 4.56703 4.70994 4.85383 4.96584 5.01167 5.11132 5.21842 5.27183 5.30630 5.35833 5.37817 5.49805 5.55915 5.61920 5.66279 5.70171 5.76561 5.81515 5.86081 5.99645 6.04603 6.06642 6.10829 6.15718 6.25424 6.38207 6.48862 6.52858 6.56991 6.66511 6.73537 6.92377 7.06606 7.11295 7.21617 7.33455 7.38220 7.41613 7.52870 7.67296 7.87674 8.62064 9.08000 9.65279 11.15481 Molecular weight = 305.21amu Principal moments of inertia in cm(-1) A = 0.016164 B = 0.003626 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.804021 B = 7721.043902 C = 8370.473953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.072 4.072 3 H 0.058 0.942 4 C -0.009 4.009 5 C -0.511 4.511 6 H 0.073 0.927 7 C 0.065 3.935 8 N -0.906 5.906 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.063 3.937 14 N -0.679 5.679 15 C 0.136 3.864 16 H 0.081 0.919 17 C -0.056 4.056 18 C -0.089 4.089 19 C -0.129 4.129 20 C -0.129 4.129 21 C -0.128 4.128 22 C -0.116 4.116 23 C -0.074 4.074 24 C -0.145 4.145 25 C -0.150 4.150 26 C 0.089 3.911 27 O -0.567 6.567 28 H 0.037 0.963 29 H 0.057 0.943 30 H 0.044 0.956 31 H 0.012 0.988 32 H 0.010 0.990 33 H 0.261 0.739 34 H 0.065 0.935 35 H 0.026 0.974 36 H 0.339 0.661 37 H 0.127 0.873 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.118 0.882 42 H 0.059 0.941 43 H 0.055 0.945 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.055 0.945 47 H 0.068 0.932 48 H 0.042 0.958 49 H 0.049 0.951 50 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.005 -1.695 27.095 27.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.091 4.091 3 H 0.077 0.923 4 C -0.047 4.047 5 C -0.549 4.549 6 H 0.091 0.909 7 C -0.136 4.136 8 N -0.546 5.546 9 Si 0.705 3.295 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.066 4.066 14 N -0.310 5.310 15 C 0.025 3.975 16 H 0.100 0.900 17 C -0.057 4.057 18 C -0.107 4.107 19 C -0.147 4.147 20 C -0.147 4.147 21 C -0.146 4.146 22 C -0.135 4.135 23 C -0.075 4.075 24 C -0.202 4.202 25 C -0.208 4.208 26 C 0.010 3.990 27 O -0.371 6.371 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.030 0.970 32 H 0.029 0.971 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.044 0.956 36 H 0.160 0.840 37 H 0.145 0.855 38 H 0.134 0.866 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.074 0.926 47 H 0.087 0.913 48 H 0.060 0.940 49 H 0.067 0.933 50 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 0.300 -1.695 26.264 26.320 hybrid contribution 1.478 -0.971 0.293 1.792 sum 1.777 -2.666 26.557 26.750 Atomic orbital electron populations 1.21578 0.95319 1.00553 1.00560 1.20978 0.96292 0.98910 0.92877 0.92346 1.19612 0.95666 0.95887 0.93548 1.21143 1.35095 1.09523 0.89106 0.90854 1.25023 0.95696 0.96898 0.95969 1.69919 1.47347 1.39331 0.97973 0.86813 0.80666 0.84448 0.77551 1.20386 1.21542 1.19123 1.22264 0.97147 0.97561 0.89585 1.60580 1.64031 1.05672 1.00757 1.20412 0.90054 0.97757 0.89240 0.90049 1.19854 0.96217 0.93518 0.96139 1.21050 0.93260 0.99431 0.96954 1.21158 0.97991 0.97540 0.98016 1.21065 0.99148 0.94101 1.00415 1.21038 0.94949 0.98829 0.99818 1.21051 0.97794 0.97182 0.97464 1.21005 0.95838 0.95456 0.95246 1.21893 0.96600 1.02394 0.99306 1.22023 1.01209 0.95142 1.02382 1.22178 0.97048 0.83762 0.95979 1.86494 1.87452 1.26605 1.36581 0.94362 0.92417 0.93680 0.96994 0.97123 0.92887 0.91690 0.95605 0.84049 0.85548 0.86550 0.86789 0.86723 0.86372 0.92245 0.92629 0.91656 0.91363 0.92639 0.91306 0.94014 0.93297 0.77850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 8.89 37.16 0.33 -2.08 16 2 C -0.07 -1.42 2.51 -90.62 -0.23 -1.65 16 3 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 4 C -0.01 -0.22 3.52 -27.88 -0.10 -0.32 16 5 C -0.51 -14.62 8.96 -34.44 -0.31 -14.93 16 6 H 0.07 2.25 7.30 -52.48 -0.38 1.87 16 7 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 8 N -0.91 -28.31 13.96 55.43 0.77 -27.54 16 9 Si 0.88 22.21 27.47 -169.99 -4.67 17.54 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 13 C 0.06 1.05 4.56 -3.82 -0.02 1.03 16 14 N -0.68 -9.29 4.65 -107.95 -0.50 -9.79 16 15 C 0.14 1.64 1.58 -68.86 -0.11 1.53 16 16 H 0.08 1.14 6.87 -51.93 -0.36 0.78 16 17 C -0.06 -0.67 3.81 -104.62 -0.40 -1.06 16 18 C -0.09 -1.03 7.12 -39.58 -0.28 -1.31 16 19 C -0.13 -1.37 10.05 -39.58 -0.40 -1.77 16 20 C -0.13 -1.31 10.05 -39.58 -0.40 -1.71 16 21 C -0.13 -1.32 10.05 -39.58 -0.40 -1.72 16 22 C -0.12 -1.31 8.78 -39.58 -0.35 -1.65 16 23 C -0.07 -0.75 0.37 -154.51 -0.06 -0.81 16 24 C -0.14 -1.58 8.18 37.16 0.30 -1.28 16 25 C -0.15 -1.35 7.21 37.15 0.27 -1.09 16 26 C 0.09 0.79 5.42 37.16 0.20 0.99 16 27 O -0.57 -5.19 12.22 -35.23 -0.43 -5.62 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 30 H 0.04 0.79 7.75 -51.93 -0.40 0.39 16 31 H 0.01 0.29 7.20 -51.93 -0.37 -0.09 16 32 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 33 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 34 H 0.06 1.13 8.11 -51.93 -0.42 0.71 16 35 H 0.03 0.43 7.62 -51.93 -0.40 0.03 16 36 H 0.34 4.38 5.29 -39.29 -0.21 4.17 16 37 H 0.13 1.44 6.86 -52.48 -0.36 1.08 16 38 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.11 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.11 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.12 1.25 8.04 -52.49 -0.42 0.83 16 42 H 0.06 0.70 6.22 -51.93 -0.32 0.38 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.80 7.60 -51.93 -0.39 0.40 16 45 H 0.07 0.62 5.58 -51.93 -0.29 0.33 16 46 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.64 6.45 -51.93 -0.33 0.30 16 48 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.05 0.43 6.81 -51.93 -0.35 0.08 16 50 H 0.38 1.86 9.12 45.56 0.42 2.28 16 LS Contribution 380.11 15.07 5.73 5.73 Total: -1.00 -31.76 380.11 -9.04 -40.80 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -7.91 Total: 4.88 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: -2.03 Total: -26.00 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.27 Total: -37.33 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: -0.43 Total: -5.62 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.67 Total: 17.54 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.76 -9.04 -40.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602637113.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.271 kcal (2) G-P(sol) polarization free energy of solvation -31.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds