Wall clock time and date at job start Tue Mar 31 2020 09:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86802 * 120.00136 * 2 1 4 4 H 1.48505 * 109.46938 * 239.99784 * 3 2 1 5 5 H 1.48496 * 109.47119 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47021 * 119.99710 * 3 2 1 7 7 C 1.38950 * 119.99667 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99765 * 180.02562 * 7 2 1 9 9 N 1.37096 * 120.00258 * 0.02562 * 7 2 1 10 10 C 1.34780 * 120.00138 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99690 * 359.97438 * 10 9 7 12 12 C 1.50698 * 119.99737 * 180.02562 * 10 9 7 13 13 O 1.42903 * 109.46784 * 179.97438 * 12 10 9 14 14 C 1.34919 * 117.00054 * 179.97438 * 13 12 10 15 15 O 1.21637 * 119.99618 * 359.97438 * 14 13 12 16 16 C 1.46344 * 119.99935 * 179.97438 * 14 13 12 17 17 C 1.38070 * 126.23084 * 180.33802 * 16 14 13 18 18 C 1.39733 * 107.12032 * 180.13532 * 17 16 14 19 19 Cl 1.73599 * 126.05787 * 179.84439 * 18 17 16 20 20 C 1.35771 * 107.89135 * 359.57852 * 18 17 16 21 21 Cl 1.73597 * 125.57811 * 180.28767 * 20 18 17 22 22 N 1.35629 * 108.84688 * 0.26263 * 20 18 17 23 23 H 0.97009 * 125.69370 * 180.02562 * 22 20 18 24 24 H 0.97003 * 119.99889 * 0.02562 * 1 2 3 25 25 H 0.96999 * 120.00102 * 0.02562 * 9 7 2 26 26 H 1.08998 * 109.47304 * 60.00022 * 12 10 9 27 27 H 1.09004 * 109.47106 * 299.99657 * 12 10 9 28 28 H 1.07996 * 126.44632 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2832 2.7464 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0016 11 8 3.2101 -3.5579 0.0021 12 6 1.2435 -4.8629 0.0010 13 8 2.1721 -5.9491 0.0017 14 6 1.6564 -7.1959 0.0019 15 8 0.4505 -7.3551 0.0018 16 6 2.5479 -8.3565 0.0020 17 6 2.1618 -9.6820 -0.0044 18 6 3.3288 -10.4505 0.0016 19 17 3.4105 -12.1845 0.0011 20 6 4.3877 -9.6007 0.0018 21 17 6.0592 -10.0697 0.0012 22 7 3.9261 -8.3254 0.0021 23 1 4.4743 -7.5250 0.0020 24 1 -0.4850 0.8401 -0.0004 25 1 0.3533 -2.3907 -0.0002 26 1 0.6179 -4.9209 -0.8897 27 1 0.6159 -4.9204 0.8903 28 1 1.1483 -10.0550 -0.0101 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731240902.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:13:18 Heat of formation + Delta-G solvation = -89.241686 kcal Electronic energy + Delta-G solvation = -19235.774828 eV Core-core repulsion = 15532.729465 eV Total energy + Delta-G solvation = -3703.045364 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 306.001 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.86375 -40.18706 -38.20348 -37.21926 -36.80013 -36.38404 -34.08608 -31.59011 -31.46192 -30.14141 -28.26546 -24.92140 -23.54492 -21.39568 -20.82425 -19.72666 -19.34492 -18.16577 -17.19222 -16.69419 -16.36192 -15.59157 -15.40408 -15.04584 -14.63916 -14.10863 -14.05540 -14.05083 -13.73447 -13.18015 -12.56326 -12.29040 -12.19042 -12.11110 -11.79020 -11.68180 -11.26278 -11.17036 -10.86527 -10.55309 -10.54114 -10.35598 -9.66743 -9.44147 -8.70040 -8.62697 -8.15853 -6.56480 -3.99011 0.70966 1.05927 1.72762 1.76888 2.39996 2.77096 2.98685 3.10413 3.18989 3.23281 3.64945 4.04907 4.40641 4.50676 4.83536 5.05183 5.08125 5.18056 5.40487 5.58600 5.76718 5.93369 6.01486 6.34992 6.60522 7.41120 7.59622 7.86522 8.40166 8.99668 9.31208 9.80361 10.60360 Molecular weight = 306.00amu Principal moments of inertia in cm(-1) A = 0.032283 B = 0.002611 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.121800 B =10720.516743 C =11572.492384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.027 3.973 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.306 4.306 8 H 0.106 0.894 9 N -0.548 5.548 10 C 0.436 3.564 11 O -0.580 6.580 12 C 0.061 3.939 13 O -0.323 6.323 14 C 0.534 3.466 15 O -0.490 6.490 16 C 0.004 3.996 17 C -0.079 4.079 18 C -0.104 4.104 19 Cl -0.025 7.025 20 C 0.108 3.892 21 Cl 0.009 6.991 22 N -0.505 5.505 23 H 0.441 0.559 24 H 0.275 0.725 25 H 0.396 0.604 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.106 -20.034 -0.008 20.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.176 4.176 3 Si 0.762 3.238 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.435 4.435 8 H 0.124 0.876 9 N -0.185 5.185 10 C 0.221 3.779 11 O -0.465 6.465 12 C -0.017 4.017 13 O -0.238 6.238 14 C 0.377 3.623 15 O -0.377 6.377 16 C -0.108 4.108 17 C -0.105 4.105 18 C -0.139 4.139 19 Cl 0.003 6.997 20 C -0.038 4.038 21 Cl 0.038 6.962 22 N -0.105 5.105 23 H 0.283 0.717 24 H 0.085 0.915 25 H 0.229 0.771 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 5.624 -19.864 -0.008 20.645 hybrid contribution 0.097 1.092 0.000 1.096 sum 5.721 -18.772 -0.008 19.625 Atomic orbital electron populations 1.69603 1.06018 1.28728 1.49144 1.25324 0.95694 0.99918 0.96676 0.85845 0.78770 0.79995 0.79211 1.19730 1.20795 1.19725 1.19678 0.93460 0.81726 1.48591 0.87642 1.41689 1.09426 1.04057 1.63345 1.19256 0.88279 0.83999 0.86343 1.90549 1.13406 1.86767 1.55741 1.22457 0.91035 0.84358 1.03812 1.86158 1.40550 1.13828 1.83231 1.19563 0.86347 0.82465 0.73895 1.90938 1.14418 1.86393 1.45979 1.19238 0.80839 0.93069 1.17681 1.21144 0.98919 0.88435 1.01979 1.19518 0.92093 0.86187 1.16059 1.98353 1.98445 1.05405 1.97481 1.20683 0.87370 0.84875 1.10918 1.98439 1.10762 1.90016 1.97023 1.42023 1.06764 1.07223 1.54499 0.71691 0.91468 0.77071 0.89372 0.89364 0.81034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.44 13.05 55.50 0.72 -22.71 15 2 C 0.03 0.69 5.50 -17.47 -0.10 0.60 15 3 Si 0.94 20.22 29.55 -169.99 -5.02 15.20 15 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 15 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 15 6 H -0.27 -5.85 7.11 56.52 0.40 -5.44 15 7 C -0.31 -8.20 9.68 -14.93 -0.14 -8.35 15 8 H 0.11 2.95 7.16 -52.48 -0.38 2.57 15 9 N -0.55 -13.40 5.29 -10.96 -0.06 -13.46 15 10 C 0.44 10.05 7.86 -10.98 -0.09 9.97 15 11 O -0.58 -15.36 16.08 -14.36 -0.23 -15.59 15 12 C 0.06 1.09 5.85 36.00 0.21 1.30 15 13 O -0.32 -5.53 9.66 -47.85 -0.46 -5.99 15 14 C 0.53 7.98 7.91 33.99 0.27 8.25 15 15 O -0.49 -8.02 16.66 -19.37 -0.32 -8.35 15 16 C 0.00 0.05 7.09 -81.96 -0.58 -0.53 15 17 C -0.08 -0.86 10.64 -39.08 -0.42 -1.27 15 18 C -0.10 -1.08 6.66 -39.91 -0.27 -1.34 15 19 Cl -0.03 -0.24 29.12 -51.86 -1.51 -1.75 15 20 C 0.11 1.10 7.75 -16.76 -0.13 0.97 15 21 Cl 0.01 0.08 29.13 -51.86 -1.51 -1.43 15 22 N -0.50 -5.45 6.12 -6.53 -0.04 -5.49 15 23 H 0.44 4.36 8.96 -40.82 -0.37 4.00 15 24 H 0.28 6.83 8.31 -40.82 -0.34 6.49 15 25 H 0.40 9.15 7.90 -40.82 -0.32 8.83 15 26 H 0.09 1.42 8.13 -51.93 -0.42 1.00 15 27 H 0.09 1.43 8.13 -51.93 -0.42 1.00 15 28 H 0.17 1.61 8.06 -52.49 -0.42 1.19 15 LS Contribution 301.55 15.07 4.54 4.54 Total: -1.00 -30.20 301.55 -6.59 -36.79 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -1.47 Total: 8.63 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: -1.24 Total: 9.60 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: 0.63 Total: -41.66 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -1.02 Total: -29.93 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -3.02 Total: -3.18 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.20 -6.59 -36.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731240902.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.447 kcal (2) G-P(sol) polarization free energy of solvation -30.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds