Wall clock time and date at job start Tue Mar 31 2020 09:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31431 * 1 3 3 Si 1.86810 * 119.99896 * 2 1 4 4 H 1.48502 * 109.46888 * 239.99942 * 3 2 1 5 5 H 1.48500 * 109.46827 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46916 * 119.99731 * 3 2 1 7 7 C 1.38791 * 120.00269 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00222 * 180.02562 * 7 2 1 9 9 O 1.34869 * 119.99705 * 0.02562 * 7 2 1 10 10 C 1.34777 * 116.99875 * 179.97438 * 9 7 2 11 11 O 1.21553 * 119.99924 * 359.97438 * 10 9 7 12 12 C 1.47308 * 120.00072 * 180.27311 * 10 9 7 13 13 C 1.40023 * 120.18755 * 89.44991 * 12 10 9 14 14 F 1.35099 * 120.09562 * 359.97293 * 13 12 10 15 15 C 1.38143 * 119.80697 * 179.70152 * 13 12 10 16 16 C 1.38440 * 120.19293 * 0.57358 * 15 13 12 17 17 Br 1.89096 * 119.81627 * 179.74186 * 16 15 13 18 18 C 1.38450 * 120.37565 * 359.71982 * 16 15 13 19 19 C 1.38149 * 120.18659 * 359.97438 * 18 16 15 20 20 F 1.35102 * 120.09007 * 180.02562 * 19 18 16 21 21 H 0.96997 * 119.99593 * 0.02562 * 1 2 3 22 22 H 1.08004 * 119.90793 * 180.29640 * 15 13 12 23 23 H 1.07992 * 119.90319 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 3.1021 1.6965 -1.2125 5 1 1.2832 2.7465 -0.0006 6 1 3.1020 1.6965 1.2125 7 6 2.0083 -1.2019 0.0005 8 1 3.0883 -1.2019 0.0010 9 8 1.3340 -2.3699 0.0005 10 6 2.0680 -3.5002 0.0005 11 8 3.2819 -3.4366 0.0001 12 6 1.3993 -4.8128 -0.0055 13 6 1.0742 -5.4317 -1.2187 14 9 1.3724 -4.8266 -2.3893 15 6 0.4527 -6.6655 -1.2153 16 6 0.1406 -7.2845 -0.0170 17 35 -0.7167 -8.9699 -0.0248 18 6 0.4530 -6.6768 1.1871 19 6 1.0802 -5.4460 1.2019 20 9 1.3846 -4.8549 2.3780 21 1 -0.4849 0.8401 -0.0004 22 1 0.2055 -7.1465 -2.1502 23 1 0.2064 -7.1667 2.1174 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756596015.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:09:12 Heat of formation + Delta-G solvation = -135.194899 kcal Electronic energy + Delta-G solvation = -16838.448349 eV Core-core repulsion = 13334.893187 eV Total energy + Delta-G solvation = -3503.555162 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 305.949 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.97537 -48.95011 -39.46083 -38.40882 -35.31801 -32.63674 -32.21711 -30.66674 -29.88228 -25.72980 -23.71640 -23.07753 -20.75289 -18.16222 -17.87739 -17.49575 -17.31306 -16.03867 -15.77485 -15.57405 -15.23882 -14.69413 -14.43520 -14.33470 -14.25211 -13.10203 -12.88240 -12.80620 -12.10117 -11.99937 -11.65876 -11.25031 -10.86552 -10.67223 -10.53715 -10.51499 -10.02513 -9.40600 -8.96656 -8.88611 -8.68683 -6.52778 -4.20530 0.48604 0.78387 1.13429 2.91869 2.96927 3.14437 3.18819 3.25815 3.70898 3.79904 4.11657 4.23678 4.65624 4.67221 5.00374 5.05042 5.38094 5.57111 5.67275 5.79439 6.31700 6.54947 7.26617 7.78852 8.46425 8.93866 9.62509 10.63958 Molecular weight = 305.95amu Principal moments of inertia in cm(-1) A = 0.034755 B = 0.003991 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.456879 B = 7014.775228 C = 7198.497225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.046 3.954 3 Si 0.949 3.051 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.385 4.385 8 H 0.100 0.900 9 O -0.192 6.192 10 C 0.430 3.570 11 O -0.531 6.531 12 C -0.123 4.123 13 C 0.173 3.827 14 F -0.111 7.111 15 C -0.140 4.140 16 C -0.034 4.034 17 Br -0.024 7.024 18 C -0.140 4.140 19 C 0.172 3.828 20 F -0.111 7.111 21 H 0.273 0.727 22 H 0.157 0.843 23 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.943 -17.411 -0.054 17.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.160 4.160 3 Si 0.773 3.227 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.460 4.460 8 H 0.117 0.883 9 O -0.098 6.098 10 C 0.276 3.724 11 O -0.428 6.428 12 C -0.127 4.127 13 C 0.152 3.848 14 F -0.089 7.089 15 C -0.161 4.161 16 C -0.114 4.114 17 Br 0.061 6.939 18 C -0.161 4.161 19 C 0.152 3.848 20 F -0.089 7.089 21 H 0.083 0.917 22 H 0.175 0.825 23 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -4.137 -17.793 -0.057 18.267 hybrid contribution 0.664 1.363 0.004 1.516 sum -3.473 -16.430 -0.052 16.793 Atomic orbital electron populations 1.69986 1.06136 1.28255 1.44792 1.25427 0.95887 0.99010 0.95668 0.85662 0.78657 0.78839 0.79574 1.19230 1.20164 1.19225 1.21301 0.92630 0.79356 1.52738 0.88264 1.83995 1.38881 1.13038 1.73909 1.20011 0.85968 0.84864 0.81558 1.90707 1.14284 1.87251 1.50571 1.19607 1.04012 0.96701 0.92352 1.17111 0.96343 0.90909 0.80468 1.91611 1.90410 1.82623 1.44219 1.20950 1.01904 0.94234 0.99007 1.21229 1.01641 0.94160 0.94351 1.96766 1.77602 1.20224 1.99261 1.20952 1.01836 0.94387 0.98918 1.17113 0.96301 0.91072 0.80363 1.91611 1.90278 1.83262 1.43726 0.91661 0.82493 0.82494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.95 13.67 55.49 0.76 -24.20 14 2 C 0.05 1.28 5.50 -17.52 -0.10 1.19 14 3 Si 0.95 21.10 29.55 -169.99 -5.02 16.08 14 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 14 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 14 6 H -0.27 -5.80 7.11 56.52 0.40 -5.40 14 7 C -0.38 -11.47 9.65 30.94 0.30 -11.17 14 8 H 0.10 2.95 6.86 -52.48 -0.36 2.59 14 9 O -0.19 -5.68 9.75 -21.80 -0.21 -5.89 14 10 C 0.43 11.26 6.62 34.42 0.23 11.49 14 11 O -0.53 -14.95 16.36 -19.31 -0.32 -15.27 14 12 C -0.12 -2.52 5.76 -104.87 -0.60 -3.12 14 13 C 0.17 3.00 7.29 -38.95 -0.28 2.72 14 14 F -0.11 -2.09 16.83 2.25 0.04 -2.05 14 15 C -0.14 -1.83 9.74 -39.54 -0.39 -2.22 14 16 C -0.03 -0.41 6.23 -39.43 -0.25 -0.66 14 17 Br -0.02 -0.23 33.69 -68.01 -2.29 -2.52 14 18 C -0.14 -1.83 9.74 -39.54 -0.39 -2.22 14 19 C 0.17 3.00 7.29 -38.95 -0.28 2.71 14 20 F -0.11 -2.08 16.83 2.25 0.04 -2.05 14 21 H 0.27 7.26 8.31 -40.82 -0.34 6.92 14 22 H 0.16 1.59 8.06 -52.48 -0.42 1.17 14 23 H 0.16 1.59 8.06 -52.49 -0.42 1.16 14 LS Contribution 257.10 15.07 3.87 3.87 Total: -1.00 -32.49 257.10 -5.23 -37.72 By element: Atomic # 1 Polarization: -4.08 SS G_CDS: -0.34 Total: -4.42 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -1.76 Total: -1.27 kcal Atomic # 7 Polarization: -24.95 SS G_CDS: 0.76 Total: -24.20 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.53 Total: -21.16 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.08 Total: -4.09 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 35 Polarization: -0.23 SS G_CDS: -2.29 Total: -2.52 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -32.49 -5.23 -37.72 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756596015.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.477 kcal (2) G-P(sol) polarization free energy of solvation -32.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds