Wall clock time and date at job start Tue Mar 31 2020 09:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99952 * 2 1 4 4 H 1.48507 * 109.46984 * 239.99638 * 3 2 1 5 5 H 1.48494 * 109.47226 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47344 * 119.99894 * 3 2 1 7 7 C 1.37882 * 119.99805 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99380 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00005 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.46949 * 180.02562 * 9 7 2 11 11 O 1.45205 * 109.47463 * 180.02562 * 10 9 7 12 12 C 1.34741 * 117.00455 * 180.02562 * 11 10 9 13 13 O 1.21513 * 119.99820 * 359.97438 * 12 11 10 14 14 C 1.47433 * 120.00202 * 180.27232 * 12 11 10 15 15 C 1.39875 * 120.14939 * 89.44562 * 14 12 11 16 16 Cl 1.73607 * 120.07206 * 0.02562 * 15 14 12 17 17 C 1.37957 * 119.85091 * 179.75002 * 15 14 12 18 18 C 1.38627 * 120.14772 * 0.52748 * 17 15 14 19 19 F 1.35106 * 119.85232 * 179.76583 * 18 17 15 20 20 C 1.38643 * 120.30061 * 359.74623 * 18 17 15 21 21 C 1.37959 * 120.14178 * 359.97438 * 20 18 17 22 22 Cl 1.73602 * 120.07114 * 180.02562 * 21 20 18 23 23 H 0.96997 * 119.99441 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47279 * 59.99980 * 9 7 2 25 25 H 1.08996 * 109.47237 * 299.99873 * 9 7 2 26 26 H 1.08997 * 109.47687 * 60.00136 * 10 9 7 27 27 H 1.09010 * 109.47478 * 299.99735 * 10 9 7 28 28 H 1.08003 * 119.92636 * 180.25111 * 17 15 14 29 29 H 1.07993 * 119.92819 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 8 1.5193 -4.9196 0.0012 12 6 2.2531 -6.0497 0.0027 13 8 3.4666 -5.9861 0.0041 14 6 1.5838 -7.3633 -0.0038 15 6 1.2611 -7.9813 -1.2165 16 17 1.6484 -7.2034 -2.7194 17 6 0.6395 -9.2129 -1.2155 18 6 0.3249 -9.8330 -0.0162 19 9 -0.2881 -11.0370 -0.0222 20 6 0.6368 -9.2235 1.1894 21 6 1.2635 -7.9945 1.2026 22 17 1.6538 -7.2333 2.7132 23 1 -0.4849 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 2.8712 -3.6040 0.8922 27 1 2.8726 -3.6048 -0.8878 28 1 0.3934 -9.6930 -2.1511 29 1 0.3885 -9.7118 2.1201 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763545410.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:12:24 Heat of formation + Delta-G solvation = -125.308201 kcal Electronic energy + Delta-G solvation = -19581.279968 eV Core-core repulsion = 15856.750682 eV Total energy + Delta-G solvation = -3724.529287 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 306.001 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.54005 -40.53987 -39.04959 -37.24098 -36.66586 -36.17152 -33.37885 -31.63101 -31.47520 -30.15692 -25.54174 -24.20650 -23.75959 -21.50534 -20.76289 -18.64264 -17.96125 -17.63677 -16.78053 -16.27107 -16.04207 -15.70150 -15.57187 -15.04433 -14.63084 -14.24001 -14.20082 -13.98334 -13.11898 -12.76871 -12.76585 -12.37790 -12.15998 -11.63337 -11.34735 -11.33064 -11.27843 -11.10548 -10.81004 -10.77685 -10.48565 -9.70967 -9.70075 -9.40822 -9.34021 -9.31027 -8.45359 -6.11506 -4.16160 0.13051 0.28821 1.24086 1.71531 2.16109 2.52419 2.90311 3.29428 3.33574 3.36604 3.55098 4.19545 4.33326 4.34688 4.50547 4.53111 4.88347 5.18468 5.24355 5.25001 5.33260 5.88222 5.99134 6.03621 6.57806 6.75667 7.51114 7.59785 7.80534 7.98655 8.21181 8.88932 9.48162 10.99858 Molecular weight = 306.00amu Principal moments of inertia in cm(-1) A = 0.020795 B = 0.003620 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.162489 B = 7733.229380 C = 8383.692602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.026 3.974 10 C 0.074 3.926 11 O -0.339 6.339 12 C 0.507 3.493 13 O -0.485 6.485 14 C -0.092 4.092 15 C 0.034 3.966 16 Cl -0.019 7.019 17 C -0.143 4.143 18 C 0.145 3.855 19 F -0.120 7.120 20 C -0.143 4.143 21 C 0.034 3.966 22 Cl -0.019 7.019 23 H 0.264 0.736 24 H 0.029 0.971 25 H 0.029 0.971 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.162 0.838 29 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.323 -21.680 -0.030 21.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.011 4.011 10 C 0.002 3.998 11 O -0.254 6.254 12 C 0.347 3.653 13 O -0.373 6.373 14 C -0.095 4.095 15 C 0.006 3.994 16 Cl 0.011 6.989 17 C -0.162 4.162 18 C 0.125 3.875 19 F -0.098 7.098 20 C -0.162 4.162 21 C 0.006 3.994 22 Cl 0.011 6.989 23 H 0.074 0.926 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.180 0.820 29 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.071 -21.370 -0.029 21.371 hybrid contribution 0.479 0.845 0.002 0.972 sum 0.407 -20.525 -0.028 20.529 Atomic orbital electron populations 1.69966 1.06078 1.27125 1.49568 1.24980 0.94923 0.99366 0.94833 0.86529 0.79487 0.82465 0.78802 1.20052 1.21111 1.20047 1.20923 0.93148 0.90016 1.52462 0.92254 1.19170 0.94135 0.88770 0.99022 1.23799 0.96613 0.78155 1.01272 1.86692 1.41653 1.15253 1.81835 1.20482 0.85890 0.85116 0.73789 1.90877 1.14173 1.87884 1.44398 1.19043 1.03801 0.94984 0.91712 1.20414 0.98008 0.93495 0.87466 1.98462 1.92044 1.79692 1.28712 1.20984 1.01643 0.94504 0.99106 1.17282 0.95149 0.82063 0.93008 1.91586 1.79831 1.41135 1.97234 1.20987 1.01589 0.94655 0.99002 1.20414 0.97987 0.93566 0.87427 1.98461 1.91979 1.80480 1.28005 0.92629 0.95231 0.95239 0.91934 0.91945 0.82001 0.82002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.19 13.29 55.43 0.74 -25.45 15 2 C 0.06 1.73 5.46 -17.81 -0.10 1.63 15 3 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 15 4 H -0.28 -6.40 7.11 56.52 0.40 -5.99 15 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 15 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 7 C -0.53 -14.71 9.11 -34.44 -0.31 -15.02 15 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 15 9 C 0.03 0.68 5.35 -27.89 -0.15 0.53 15 10 C 0.07 1.63 5.41 37.15 0.20 1.83 15 11 O -0.34 -6.86 10.23 -40.60 -0.42 -7.27 15 12 C 0.51 9.15 5.49 34.48 0.19 9.34 15 13 O -0.49 -9.67 16.90 -19.28 -0.33 -10.00 15 14 C -0.09 -1.33 5.76 -104.93 -0.60 -1.93 15 15 C 0.03 0.41 6.35 -39.07 -0.25 0.17 15 16 Cl -0.02 -0.24 28.04 -51.86 -1.45 -1.69 15 17 C -0.14 -1.30 9.79 -39.54 -0.39 -1.69 15 18 C 0.15 1.27 7.30 -39.29 -0.29 0.99 15 19 F -0.12 -1.00 17.26 2.25 0.04 -0.96 15 20 C -0.14 -1.30 9.79 -39.53 -0.39 -1.69 15 21 C 0.03 0.41 6.35 -39.07 -0.25 0.16 15 22 Cl -0.02 -0.24 28.04 -51.86 -1.45 -1.69 15 23 H 0.26 7.32 8.31 -40.82 -0.34 6.98 15 24 H 0.03 0.80 8.14 -51.93 -0.42 0.38 15 25 H 0.03 0.80 8.14 -51.93 -0.42 0.38 15 26 H 0.06 1.36 8.14 -51.93 -0.42 0.94 15 27 H 0.06 1.36 8.14 -51.92 -0.42 0.93 15 28 H 0.16 1.05 8.06 -52.48 -0.42 0.63 15 29 H 0.16 1.05 8.06 -52.49 -0.42 0.63 15 LS Contribution 305.52 15.07 4.60 4.60 Total: -1.00 -30.36 305.52 -7.70 -38.06 By element: Atomic # 1 Polarization: -4.12 SS G_CDS: -2.08 Total: -6.20 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -2.33 Total: -5.68 kcal Atomic # 7 Polarization: -26.19 SS G_CDS: 0.74 Total: -25.45 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.74 Total: -17.27 kcal Atomic # 9 Polarization: -1.00 SS G_CDS: 0.04 Total: -0.96 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -2.91 Total: -3.39 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.36 -7.70 -38.06 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763545410.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.245 kcal (2) G-P(sol) polarization free energy of solvation -30.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds