Wall clock time and date at job start Tue Mar 31 2020 08:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46839 * 111.00184 * 2 1 4 4 C 1.53048 * 109.52038 * 174.12346 * 3 2 1 5 5 C 1.53056 * 109.25561 * 59.11726 * 4 3 2 6 6 C 1.53053 * 109.48765 * 62.36810 * 5 4 3 7 7 C 1.53134 * 109.13833 * 62.47360 * 6 5 4 8 8 C 1.53035 * 109.27475 * 57.60007 * 7 6 5 9 9 N 1.46849 * 109.52181 * 300.80462 * 8 7 6 10 10 C 1.46902 * 111.00340 * 185.84813 * 9 8 7 11 11 C 1.53002 * 109.47139 * 164.07995 * 10 9 8 12 12 H 1.08997 * 109.47279 * 56.08411 * 11 10 9 13 13 C 1.47196 * 109.46885 * 296.07894 * 11 10 9 14 14 N 6.76901 * 142.70235 * 35.76859 * 2 1 3 15 15 C 1.53007 * 109.46699 * 176.08476 * 11 10 9 16 16 C 1.50696 * 109.46620 * 184.99718 * 15 11 10 17 17 H 1.07998 * 120.00357 * 359.97438 * 16 15 11 18 18 C 1.37885 * 119.99709 * 180.02562 * 16 15 11 19 19 N 1.31513 * 120.00024 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99872 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47182 * 60.00295 * 20 18 16 22 22 H 1.48506 * 109.46852 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47242 * 299.99879 * 20 18 16 24 24 C 1.46845 * 111.22175 * 61.75458 * 9 8 7 25 25 C 1.53035 * 109.29224 * 302.41948 * 5 4 3 26 26 C 1.46849 * 110.99637 * 235.77313 * 2 1 3 27 27 H 1.09007 * 109.47385 * 59.99832 * 1 2 3 28 28 H 1.09005 * 109.47169 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46961 * 299.99886 * 1 2 3 30 30 H 1.09003 * 109.46203 * 54.10850 * 3 2 1 31 31 H 1.09006 * 109.45649 * 294.13572 * 3 2 1 32 32 H 1.09000 * 109.50733 * 299.18968 * 4 3 2 33 33 H 1.08999 * 109.54692 * 179.07685 * 4 3 2 34 34 H 1.09003 * 109.53088 * 302.56888 * 6 5 4 35 35 H 1.09003 * 109.57892 * 182.40229 * 6 5 4 36 36 H 1.09006 * 109.50230 * 297.65863 * 7 6 5 37 37 H 1.09006 * 109.50463 * 177.53987 * 7 6 5 38 38 H 1.09000 * 109.46354 * 60.81919 * 8 7 6 39 39 H 1.09006 * 109.46425 * 180.79520 * 8 7 6 40 40 H 1.09007 * 109.46286 * 284.07591 * 10 9 8 41 41 H 1.08990 * 109.47097 * 44.07270 * 10 9 8 42 42 H 1.09001 * 109.47215 * 304.99794 * 15 11 10 43 43 H 1.08996 * 109.47094 * 64.99865 * 15 11 10 44 44 H 0.96995 * 120.00369 * 180.02562 * 19 18 16 45 45 H 1.08997 * 109.47034 * 178.33574 * 24 9 8 46 46 H 1.08997 * 109.46261 * 58.34499 * 24 9 8 47 47 H 1.09006 * 109.50886 * 177.49934 * 25 5 4 48 48 H 1.08999 * 109.50845 * 297.62320 * 25 5 4 49 49 H 1.08999 * 109.46277 * 305.87298 * 26 2 1 50 50 H 1.09004 * 109.46182 * 65.83866 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3708 0.0000 4 6 3.5182 1.3340 0.1477 5 6 4.1186 0.5354 -1.0118 6 6 3.7981 1.2360 -2.3343 7 6 4.4507 2.6213 -2.3396 8 6 5.9592 2.4699 -2.1307 9 7 6.2121 1.7951 -0.8512 10 6 7.6497 1.7560 -0.5516 11 6 7.8536 1.4203 0.9271 12 1 7.3512 0.4814 1.1592 13 6 7.2893 2.4971 1.7570 14 7 6.8537 3.3281 2.3975 15 6 9.3497 1.2836 1.2173 16 6 9.5458 0.8333 2.6420 17 1 8.6891 0.6622 3.2771 18 6 10.8190 0.6407 3.1351 19 7 11.8621 0.8495 2.3619 20 14 11.0621 0.0832 4.9013 21 1 10.3973 -1.2294 5.1021 22 1 12.5141 -0.0497 5.1830 23 1 10.4682 1.0849 5.8228 24 6 5.6357 0.4446 -0.8394 25 6 3.5182 -0.8723 -1.0205 26 6 1.9952 -0.7711 -1.1336 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.5629 1.9258 0.8326 31 1 1.7330 1.8604 -0.9380 32 1 3.7808 0.8575 1.0922 33 1 3.9109 2.3507 0.1313 34 1 2.7182 1.3415 -2.4384 35 1 4.1882 0.6463 -3.1639 36 1 4.0305 3.2246 -1.5347 37 1 4.2629 3.1084 -3.2964 38 1 6.3807 1.8779 -2.9430 39 1 6.4251 3.4553 -2.1198 40 1 8.1283 0.9938 -1.1666 41 1 8.0924 2.7282 -0.7680 42 1 9.7854 0.5484 0.5406 43 1 9.8379 2.2469 1.0703 44 1 12.7577 0.7137 2.7086 45 1 5.8650 -0.0401 0.1096 46 1 6.0598 -0.1384 -1.6569 47 1 3.9100 -1.4298 -1.8713 48 1 3.7812 -1.3859 -0.0958 49 1 1.5631 -1.7718 -1.1239 50 1 1.7326 -0.2713 -2.0660 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799177566.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:14 Heat of formation + Delta-G solvation = 14.402958 kcal Electronic energy + Delta-G solvation = -26389.300499 eV Core-core repulsion = 23029.357324 eV Total energy + Delta-G solvation = -3359.943175 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.57924 -38.00087 -36.24711 -34.35659 -33.41157 -32.41619 -31.06789 -30.81259 -28.49661 -26.91721 -25.16308 -24.49000 -23.38621 -22.39590 -22.12264 -21.55121 -20.32389 -18.07739 -16.65584 -16.62240 -16.08291 -15.49826 -15.29197 -14.82357 -14.69096 -14.48918 -14.43472 -14.33028 -14.03666 -13.45400 -13.10113 -12.78946 -12.60409 -12.52421 -12.40343 -12.25994 -12.17625 -11.94209 -11.78840 -11.56359 -11.36751 -11.20717 -11.13897 -11.04724 -10.98763 -10.77361 -10.65799 -10.54308 -10.28645 -10.19776 -10.06212 -9.95205 -9.48296 -9.19727 -8.43023 -8.41578 -8.09920 -6.07168 -4.10092 3.33327 3.37242 3.41385 3.79471 3.79986 3.89750 4.00880 4.43557 4.56061 4.65114 4.70136 4.92955 4.97527 5.00397 5.07411 5.13308 5.17940 5.27007 5.30984 5.38279 5.41115 5.44460 5.50457 5.56068 5.59562 5.61302 5.64190 5.66497 5.79241 5.80432 5.82731 5.87990 6.00098 6.01511 6.07707 6.09878 6.12765 6.26056 6.38299 6.43071 6.55228 6.56585 6.93494 6.97282 7.25158 7.27389 7.45416 7.56110 7.88222 8.26255 8.65856 8.94624 9.55231 11.03746 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.017940 B = 0.003521 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.411751 B = 7950.955564 C = 8583.245273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.542 5.542 3 C 0.054 3.946 4 C -0.097 4.097 5 C -0.052 4.052 6 C -0.112 4.112 7 C -0.117 4.117 8 C 0.058 3.942 9 N -0.538 5.538 10 C 0.063 3.937 11 C 0.012 3.988 12 H 0.098 0.902 13 C 0.259 3.741 14 N -0.481 5.481 15 C 0.032 3.968 16 C -0.525 4.525 17 H 0.056 0.944 18 C 0.063 3.937 19 N -0.893 5.893 20 Si 0.891 3.109 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.276 1.276 24 C 0.064 3.936 25 C -0.107 4.107 26 C 0.058 3.942 27 H 0.021 0.979 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.032 0.968 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.031 0.969 39 H 0.072 0.928 40 H 0.053 0.947 41 H 0.078 0.922 42 H 0.036 0.964 43 H 0.025 0.975 44 H 0.263 0.737 45 H 0.082 0.918 46 H 0.034 0.966 47 H 0.065 0.935 48 H 0.075 0.925 49 H 0.070 0.930 50 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.934 -2.533 -13.247 23.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.267 5.267 3 C -0.074 4.074 4 C -0.135 4.135 5 C -0.052 4.052 6 C -0.149 4.149 7 C -0.155 4.155 8 C -0.070 4.070 9 N -0.262 5.262 10 C -0.065 4.065 11 C -0.010 4.010 12 H 0.116 0.884 13 C -0.058 4.058 14 N -0.158 5.158 15 C -0.007 4.007 16 C -0.563 4.563 17 H 0.074 0.926 18 C -0.139 4.139 19 N -0.531 5.531 20 Si 0.718 3.282 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.064 4.064 25 C -0.146 4.146 26 C -0.070 4.070 27 H 0.039 0.961 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.050 0.950 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.049 0.951 39 H 0.091 0.909 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.054 0.946 43 H 0.043 0.957 44 H 0.072 0.928 45 H 0.100 0.900 46 H 0.052 0.948 47 H 0.084 0.916 48 H 0.093 0.907 49 H 0.089 0.911 50 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -19.464 -1.231 -11.493 22.637 hybrid contribution 0.540 -0.735 -0.619 1.102 sum -18.924 -1.966 -12.112 22.554 Atomic orbital electron populations 1.22340 0.87740 1.01780 1.00417 1.61916 1.07098 1.14320 1.43385 1.22193 0.96628 0.88502 1.00033 1.21542 0.92379 1.01549 0.97990 1.20532 0.94576 0.94811 0.95302 1.21714 1.00095 0.96274 0.96832 1.21618 0.95255 0.97208 1.01419 1.22043 0.96121 0.98916 0.89942 1.61894 1.14253 1.18470 1.31610 1.22214 0.86817 1.02102 0.95408 1.19215 1.00371 0.92073 0.89350 0.88379 1.28813 0.91043 0.93532 0.92423 1.80971 1.11932 1.11936 1.11002 1.19161 0.85469 0.98404 0.97645 1.21110 0.92320 1.46115 0.96802 0.92552 1.24947 0.96048 0.95263 0.97668 1.69926 0.98286 1.48891 1.36032 0.86664 0.76996 0.79385 0.85108 1.20042 1.21227 1.20201 1.22160 0.93240 0.89459 1.01525 1.21619 0.93946 0.96398 1.02591 1.22084 0.95762 0.97804 0.91350 0.96064 0.91585 0.91462 0.91171 0.94975 0.91272 0.89948 0.92159 0.92422 0.90961 0.92068 0.95079 0.90929 0.92895 0.90381 0.94571 0.95658 0.92777 0.89977 0.94788 0.91625 0.90675 0.91132 0.94953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.59 60.06 0.58 0.79 16 2 N -0.54 -5.59 4.91 -242.93 -1.19 -6.78 16 3 C 0.05 0.57 5.22 -3.83 -0.02 0.55 16 4 C -0.10 -1.16 4.46 -26.68 -0.12 -1.27 16 5 C -0.05 -0.54 0.51 -154.46 -0.08 -0.62 16 6 C -0.11 -1.06 4.20 -26.63 -0.11 -1.17 16 7 C -0.12 -1.16 5.74 -26.64 -0.15 -1.31 16 8 C 0.06 0.65 5.44 -3.83 -0.02 0.63 16 9 N -0.54 -7.05 3.62 -234.72 -0.85 -7.90 16 10 C 0.06 0.94 4.35 -3.82 -0.02 0.92 16 11 C 0.01 0.22 2.21 -93.40 -0.21 0.01 16 12 H 0.10 1.74 6.51 -51.93 -0.34 1.40 16 13 C 0.26 5.42 13.64 -20.76 -0.28 5.14 16 14 N -0.48 -10.94 18.54 42.15 0.78 -10.16 16 15 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 16 C -0.53 -14.06 8.60 -34.44 -0.30 -14.35 16 17 H 0.06 1.50 7.59 -52.49 -0.40 1.11 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 19 N -0.89 -25.65 13.29 55.43 0.74 -24.91 16 20 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 C 0.06 0.77 4.03 -3.88 -0.02 0.75 16 25 C -0.11 -1.04 4.89 -26.68 -0.13 -1.17 16 26 C 0.06 0.53 5.22 -3.82 -0.02 0.51 16 27 H 0.02 0.17 8.14 -51.93 -0.42 -0.26 16 28 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 31 H 0.03 0.33 6.46 -51.93 -0.34 -0.01 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.08 1.10 5.98 -51.93 -0.31 0.79 16 34 H 0.06 0.56 4.94 -51.93 -0.26 0.30 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.79 6.53 -51.93 -0.34 0.45 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.82 7.96 -51.93 -0.41 0.41 16 40 H 0.05 0.74 8.06 -51.92 -0.42 0.32 16 41 H 0.08 1.17 7.87 -51.93 -0.41 0.76 16 42 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.08 1.08 6.43 -51.93 -0.33 0.74 16 46 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 48 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 50 H 0.03 0.29 6.57 -51.93 -0.34 -0.05 16 LS Contribution 376.27 15.07 5.67 5.67 Total: -1.00 -29.56 376.27 -9.93 -39.50 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -8.94 Total: -3.48 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -1.12 Total: -8.34 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: -0.52 Total: -49.76 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.56 -9.93 -39.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799177566.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.898 kcal (2) G-P(sol) polarization free energy of solvation -29.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds