Wall clock time and date at job start Tue Mar 31 2020 08:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46846 * 111.00276 * 2 1 4 4 C 1.53054 * 109.51779 * 174.13327 * 3 2 1 5 5 C 1.53041 * 109.26329 * 59.08900 * 4 3 2 6 6 C 1.53032 * 109.55714 * 182.41730 * 5 4 3 7 7 C 1.53136 * 109.15101 * 182.32958 * 6 5 4 8 8 C 1.53037 * 109.27196 * 57.56051 * 7 6 5 9 9 N 1.46850 * 109.55358 * 300.80637 * 8 7 6 10 10 C 1.46892 * 111.00389 * 185.84797 * 9 8 7 11 11 C 1.53006 * 109.46985 * 52.02029 * 10 9 8 12 12 H 1.09001 * 109.46662 * 301.80101 * 11 10 9 13 13 C 1.47197 * 109.47079 * 61.80047 * 11 10 9 14 14 N 6.71913 * 111.94508 * 249.15569 * 2 1 3 15 15 C 1.52999 * 109.47050 * 181.80282 * 11 10 9 16 16 C 1.50696 * 109.47044 * 174.99869 * 15 11 10 17 17 H 1.08004 * 119.99996 * 0.02562 * 16 15 11 18 18 C 1.37883 * 120.00224 * 179.97438 * 16 15 11 19 19 N 1.31513 * 119.99481 * 0.27646 * 18 16 15 20 20 Si 1.86794 * 120.00128 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47424 * 60.00260 * 20 18 16 22 22 H 1.48498 * 109.47375 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47090 * 300.00092 * 20 18 16 24 24 C 1.46860 * 111.17982 * 61.76360 * 9 8 7 25 25 C 1.53056 * 109.28249 * 302.40810 * 5 4 3 26 26 C 1.46845 * 111.00040 * 235.73883 * 2 1 3 27 27 H 1.08993 * 109.47449 * 59.99948 * 1 2 3 28 28 H 1.09002 * 109.47274 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46859 * 299.99876 * 1 2 3 30 30 H 1.09002 * 109.46285 * 54.11337 * 3 2 1 31 31 H 1.09007 * 109.46481 * 294.14728 * 3 2 1 32 32 H 1.09000 * 109.50659 * 299.15154 * 4 3 2 33 33 H 1.08999 * 109.54176 * 179.04591 * 4 3 2 34 34 H 1.08993 * 109.52546 * 302.23576 * 6 5 4 35 35 H 1.09006 * 109.51990 * 62.36952 * 6 5 4 36 36 H 1.09004 * 109.50364 * 177.49547 * 7 6 5 37 37 H 1.08991 * 109.51318 * 297.62027 * 7 6 5 38 38 H 1.08999 * 109.45950 * 180.77905 * 8 7 6 39 39 H 1.09004 * 109.45928 * 60.83138 * 8 7 6 40 40 H 1.09003 * 109.47551 * 292.01658 * 10 9 8 41 41 H 1.09002 * 109.47134 * 172.01216 * 10 9 8 42 42 H 1.08995 * 109.47472 * 54.99547 * 15 11 10 43 43 H 1.09002 * 109.46789 * 294.99739 * 15 11 10 44 44 H 0.96993 * 120.00407 * 359.71891 * 19 18 16 45 45 H 1.09004 * 109.46381 * 58.34817 * 24 9 8 46 46 H 1.08993 * 109.46759 * 178.33261 * 24 9 8 47 47 H 1.08999 * 109.50323 * 177.53733 * 25 5 4 48 48 H 1.08998 * 109.50496 * 297.65897 * 25 5 4 49 49 H 1.09005 * 109.46387 * 305.88633 * 26 2 1 50 50 H 1.08998 * 109.46372 * 65.85588 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3339 0.1475 5 6 4.1185 0.5349 -1.0116 6 6 5.6362 0.4425 -0.8383 7 6 6.2333 -0.3081 -2.0321 8 6 5.8541 0.4168 -3.3255 9 7 4.3916 0.4767 -3.4446 10 6 3.9916 1.0423 -4.7399 11 6 4.7012 0.2884 -5.8666 12 1 5.7800 0.3584 -5.7274 13 6 4.2941 -1.1260 -5.8427 14 7 3.9800 -2.2176 -5.8244 15 6 4.3194 0.9064 -7.2131 16 6 5.1111 0.2452 -8.3117 17 1 5.8158 -0.5379 -8.0734 18 6 4.9352 0.6391 -9.6213 19 7 4.0804 1.5956 -9.9110 20 14 5.9161 -0.1810 -10.9832 21 1 5.6159 -1.6353 -11.0027 22 1 5.5457 0.4188 -12.2901 23 1 7.3669 0.0218 -10.7393 24 6 3.7994 1.2339 -2.3343 25 6 3.5181 -0.8730 -1.0193 26 6 1.9952 -0.7718 -1.1330 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.5630 1.9259 0.8327 31 1 1.7330 1.8607 -0.9378 32 1 3.7810 0.8580 1.0922 33 1 3.9110 2.3506 0.1305 34 1 6.0591 1.4459 -0.7903 35 1 5.8656 -0.0941 0.0823 36 1 7.3187 -0.3385 -1.9369 37 1 5.8409 -1.3246 -2.0563 38 1 6.2660 -0.1227 -4.1783 39 1 6.2586 1.4288 -3.3066 40 1 4.2682 2.0960 -4.7774 41 1 2.9127 0.9453 -4.8612 42 1 4.5396 1.9738 -7.1985 43 1 3.2546 0.7574 -7.3924 44 1 3.5708 2.0212 -9.2039 45 1 4.2129 2.2424 -2.3212 46 1 2.7187 1.2861 -2.4659 47 1 3.9103 -1.4312 -1.8694 48 1 3.7808 -1.3857 -0.0940 49 1 1.5629 -1.7724 -1.1230 50 1 1.7329 -0.2724 -2.0657 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799177567.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:17 Heat of formation + Delta-G solvation = 13.094556 kcal Electronic energy + Delta-G solvation = -26491.875959 eV Core-core repulsion = 23131.876047 eV Total energy + Delta-G solvation = -3359.999911 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.64721 -38.08873 -36.41117 -34.55527 -33.66009 -32.32249 -31.19358 -30.93940 -28.27272 -26.74570 -25.18821 -24.26371 -23.49909 -22.89314 -22.16974 -21.48771 -20.34540 -18.18800 -17.18044 -16.61785 -16.25498 -15.58393 -15.29590 -14.90337 -14.65693 -14.57734 -14.43509 -13.90909 -13.77026 -13.53993 -13.48835 -13.12545 -12.71316 -12.62807 -12.51299 -12.31867 -12.16968 -12.06913 -11.68959 -11.59510 -11.51649 -11.33998 -11.25072 -11.12680 -10.98414 -10.89230 -10.69172 -10.43504 -10.25322 -10.17601 -10.14590 -9.94177 -9.84552 -8.68260 -8.42762 -8.42448 -8.18470 -6.44965 -4.16203 3.41423 3.44348 3.61734 3.65039 3.73645 3.78919 3.92932 4.47858 4.49940 4.60269 4.63763 4.81386 4.93427 5.01492 5.08601 5.10382 5.16081 5.25207 5.29300 5.33620 5.38083 5.42401 5.44778 5.49634 5.51445 5.58909 5.63680 5.66377 5.68781 5.76100 5.78797 5.87242 5.88769 5.93889 5.99407 6.05072 6.09439 6.19622 6.27196 6.31103 6.36362 6.40842 6.91571 6.95970 7.06741 7.15080 7.17327 7.23295 8.01414 8.33167 8.51384 8.77353 9.55019 10.95776 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.021331 B = 0.003363 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.353372 B = 8323.964392 C = 8718.351694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.544 5.544 3 C 0.054 3.946 4 C -0.105 4.105 5 C -0.054 4.054 6 C -0.107 4.107 7 C -0.118 4.118 8 C 0.047 3.953 9 N -0.536 5.536 10 C 0.063 3.937 11 C 0.013 3.987 12 H 0.103 0.897 13 C 0.254 3.746 14 N -0.472 5.472 15 C 0.018 3.982 16 C -0.606 4.606 17 H 0.050 0.950 18 C 0.021 3.979 19 N -0.908 5.908 20 Si 1.065 2.935 21 H -0.288 1.288 22 H -0.281 1.281 23 H -0.286 1.286 24 C 0.065 3.935 25 C -0.096 4.096 26 C 0.055 3.945 27 H 0.024 0.976 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.034 0.966 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.034 0.966 40 H 0.049 0.951 41 H 0.078 0.922 42 H 0.027 0.973 43 H 0.016 0.984 44 H 0.269 0.731 45 H 0.032 0.968 46 H 0.072 0.928 47 H 0.084 0.916 48 H 0.061 0.939 49 H 0.070 0.930 50 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.854 2.113 22.211 22.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.269 5.269 3 C -0.074 4.074 4 C -0.143 4.143 5 C -0.054 4.054 6 C -0.145 4.145 7 C -0.155 4.155 8 C -0.081 4.081 9 N -0.260 5.260 10 C -0.065 4.065 11 C -0.009 4.009 12 H 0.120 0.880 13 C -0.063 4.063 14 N -0.149 5.149 15 C -0.020 4.020 16 C -0.644 4.644 17 H 0.069 0.931 18 C -0.184 4.184 19 N -0.544 5.544 20 Si 0.893 3.107 21 H -0.214 1.214 22 H -0.207 1.207 23 H -0.213 1.213 24 C -0.063 4.063 25 C -0.134 4.134 26 C -0.072 4.072 27 H 0.042 0.958 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.053 0.947 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.053 0.947 40 H 0.068 0.932 41 H 0.096 0.904 42 H 0.045 0.955 43 H 0.035 0.965 44 H 0.079 0.921 45 H 0.050 0.950 46 H 0.090 0.910 47 H 0.102 0.898 48 H 0.080 0.920 49 H 0.088 0.912 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.098 -0.241 21.046 21.076 hybrid contribution -0.185 1.691 0.794 1.878 sum -1.283 1.450 21.841 21.926 Atomic orbital electron populations 1.22337 0.87641 1.01990 1.00398 1.61959 1.07258 1.13599 1.44058 1.22106 0.95637 0.89332 1.00298 1.21614 0.94150 0.99865 0.98646 1.20556 0.95097 0.96044 0.93711 1.21602 0.94285 1.00319 0.98284 1.21615 0.99810 1.00263 0.93835 1.22226 0.87898 0.99291 0.98688 1.61956 1.09273 1.52964 1.01785 1.22218 1.00668 0.96539 0.87117 1.19156 1.00809 0.83137 0.97763 0.87962 1.28716 0.92522 0.94483 0.90573 1.80986 1.09799 1.12949 1.11174 1.19276 0.97399 0.96181 0.89161 1.21957 1.26092 1.23034 0.93324 0.93123 1.25790 0.97265 0.95955 0.99346 1.70804 1.23632 1.23090 1.36862 0.83584 0.75532 0.75685 0.75863 1.21409 1.20671 1.21258 1.22168 0.99532 0.94285 0.90292 1.21544 0.93541 0.95907 1.02371 1.22122 0.96080 0.97778 0.91224 0.95763 0.91479 0.91622 0.91126 0.94734 0.90950 0.91689 0.92322 0.91897 0.91689 0.90946 0.89976 0.94730 0.93240 0.90399 0.95485 0.96535 0.92072 0.95007 0.90968 0.89782 0.92028 0.91197 0.94264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.59 60.06 0.58 0.80 16 2 N -0.54 -5.60 4.91 -242.95 -1.19 -6.79 16 3 C 0.05 0.50 5.22 -3.83 -0.02 0.48 16 4 C -0.10 -0.92 4.89 -26.68 -0.13 -1.05 16 5 C -0.05 -0.54 0.51 -154.46 -0.08 -0.62 16 6 C -0.11 -1.01 4.79 -26.64 -0.13 -1.14 16 7 C -0.12 -1.25 5.74 -26.64 -0.15 -1.40 16 8 C 0.05 0.58 5.03 -3.83 -0.02 0.56 16 9 N -0.54 -7.09 3.63 -234.70 -0.85 -7.94 16 10 C 0.06 0.95 4.52 -3.83 -0.02 0.93 16 11 C 0.01 0.24 1.75 -93.41 -0.16 0.08 16 12 H 0.10 1.80 6.08 -51.93 -0.32 1.48 16 13 C 0.25 5.31 13.44 -20.76 -0.28 5.03 16 14 N -0.47 -10.67 18.54 42.16 0.78 -9.88 16 15 C 0.02 0.42 3.74 -27.89 -0.10 0.32 16 16 C -0.61 -16.31 8.60 -34.44 -0.30 -16.60 16 17 H 0.05 1.37 7.59 -52.48 -0.40 0.97 16 18 C 0.02 0.59 5.46 -17.82 -0.10 0.49 16 19 N -0.91 -26.72 13.65 55.43 0.76 -25.97 16 20 Si 1.07 24.97 29.90 -169.99 -5.08 19.89 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 24 C 0.07 0.74 3.60 -3.86 -0.01 0.73 16 25 C -0.10 -1.07 4.40 -26.68 -0.12 -1.19 16 26 C 0.06 0.63 5.22 -3.83 -0.02 0.61 16 27 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 31 H 0.03 0.34 6.54 -51.92 -0.34 0.00 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.85 6.65 -51.93 -0.35 0.51 16 38 H 0.08 1.12 5.70 -51.93 -0.30 0.83 16 39 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 42 H 0.03 0.62 8.00 -51.93 -0.42 0.21 16 43 H 0.02 0.41 8.01 -51.93 -0.42 -0.01 16 44 H 0.27 7.76 7.22 -40.82 -0.29 7.46 16 45 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.07 0.86 4.91 -51.93 -0.26 0.61 16 47 H 0.08 1.10 6.09 -51.93 -0.32 0.78 16 48 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 49 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 50 H 0.04 0.50 6.50 -51.93 -0.34 0.16 16 LS Contribution 373.74 15.07 5.63 5.63 Total: -1.00 -29.97 373.74 -9.88 -39.85 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -8.86 Total: -2.80 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -1.06 Total: -11.99 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: -0.51 Total: -50.58 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -5.08 Total: 19.89 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.97 -9.88 -39.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799177567.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.947 kcal (2) G-P(sol) polarization free energy of solvation -29.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds