Wall clock time and date at job start Tue Mar 31 2020 08:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46896 * 111.00139 * 2 1 4 4 C 1.46897 * 110.99814 * 123.95481 * 2 1 3 5 5 C 1.53001 * 109.47528 * 66.04432 * 4 2 1 6 6 N 1.46897 * 109.47528 * 179.97438 * 5 4 2 7 7 C 1.46906 * 110.99814 * 293.95568 * 6 5 4 8 8 C 1.46905 * 111.00158 * 170.00206 * 6 5 4 9 9 C 1.50695 * 109.46944 * 189.99717 * 8 6 5 10 10 C 1.38278 * 119.92801 * 269.72394 * 9 8 6 11 11 C 1.38111 * 120.07611 * 179.72463 * 10 9 8 12 12 C 1.38907 * 119.92042 * 0.55438 * 11 10 9 13 13 N 1.39680 * 120.07281 * 179.74647 * 12 11 10 14 14 C 1.46499 * 120.00038 * 179.97438 * 13 12 11 15 15 C 1.46492 * 119.99794 * 359.97239 * 13 12 11 16 16 C 1.50700 * 109.47087 * 90.00707 * 15 13 12 17 17 H 1.08001 * 119.99941 * 359.97438 * 16 15 13 18 18 C 1.37875 * 120.00266 * 180.02562 * 16 15 13 19 19 N 1.31520 * 120.00308 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99998 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.47152 * 90.00183 * 20 18 16 22 22 H 1.48496 * 109.47511 * 210.00306 * 20 18 16 23 23 H 1.48501 * 109.47055 * 330.00363 * 20 18 16 24 24 C 1.38913 * 119.85605 * 359.72157 * 12 11 10 25 25 C 1.38111 * 119.92121 * 0.02562 * 24 12 11 26 26 H 1.09000 * 109.47033 * 296.04673 * 1 2 3 27 27 H 1.09001 * 109.46544 * 56.04617 * 1 2 3 28 28 H 1.08998 * 109.46783 * 176.04784 * 1 2 3 29 29 H 1.09000 * 109.47205 * 183.95105 * 3 2 1 30 30 H 1.09000 * 109.46904 * 303.95404 * 3 2 1 31 31 H 1.09005 * 109.47010 * 63.95444 * 3 2 1 32 32 H 1.09001 * 109.47003 * 306.04660 * 4 2 1 33 33 H 1.09001 * 109.47338 * 186.04469 * 4 2 1 34 34 H 1.09009 * 109.46667 * 59.99818 * 5 4 2 35 35 H 1.09002 * 109.47365 * 300.00315 * 5 4 2 36 36 H 1.08992 * 109.47459 * 59.99744 * 7 6 5 37 37 H 1.09004 * 109.47040 * 179.97438 * 7 6 5 38 38 H 1.09000 * 109.47033 * 299.99847 * 7 6 5 39 39 H 1.09002 * 109.46783 * 309.99945 * 8 6 5 40 40 H 1.09002 * 109.46955 * 69.99566 * 8 6 5 41 41 H 1.08006 * 119.96360 * 359.97438 * 10 9 8 42 42 H 1.08002 * 120.03582 * 180.27147 * 11 10 9 43 43 H 1.09004 * 109.47411 * 89.99464 * 14 13 12 44 44 H 1.09001 * 109.46989 * 209.99904 * 14 13 12 45 45 H 1.09007 * 109.46749 * 329.99632 * 14 13 12 46 46 H 1.09005 * 109.47192 * 210.00106 * 15 13 12 47 47 H 1.08999 * 109.47701 * 330.00397 * 15 13 12 48 48 H 0.96998 * 119.99787 * 179.97438 * 19 18 16 49 49 H 1.07991 * 120.04084 * 179.97438 * 24 12 11 50 50 H 1.07993 * 119.96033 * 179.97438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6314 -2.2426 0.9704 6 7 2.1584 -3.0087 2.1076 7 6 3.6274 -3.0086 2.1070 8 6 1.6320 -4.3802 2.1077 9 6 1.9911 -5.0560 3.4059 10 6 3.1751 -5.7625 3.5114 11 6 3.5100 -6.3783 4.7014 12 6 2.6504 -6.2969 5.7895 13 7 2.9835 -6.9229 6.9930 14 6 2.0760 -6.8355 8.1397 15 6 4.2402 -7.6668 7.1083 16 6 5.3309 -6.7401 7.5801 17 1 5.1102 -5.7009 7.7742 18 6 6.6109 -7.2187 7.7630 19 7 7.5630 -6.4099 8.1743 20 14 6.9930 -9.0161 7.4267 21 1 7.4017 -9.1782 6.0082 22 1 8.0971 -9.4620 8.3140 23 1 5.7839 -9.8369 7.6903 24 6 1.4591 -5.5911 5.6785 25 6 1.1329 -4.9733 4.4871 26 1 -0.3633 0.4513 0.9233 27 1 -0.3632 0.5740 -0.8525 28 1 -0.3633 -1.0252 -0.0708 29 1 3.0829 1.3432 -0.0708 30 1 1.5899 1.9163 -0.8524 31 1 1.7045 1.8723 0.9234 32 1 1.5611 -0.3872 2.0628 33 1 3.0797 -0.6612 1.1756 34 1 2.0658 -2.6214 0.0451 35 1 0.5472 -2.3476 0.9323 36 1 3.9908 -1.9835 2.1778 37 1 3.9911 -3.5823 2.9595 38 1 3.9904 -3.4598 1.1835 39 1 0.5476 -4.3532 1.9999 40 1 2.0660 -4.9360 1.2765 41 1 3.8406 -5.8296 2.6634 42 1 4.4369 -6.9263 4.7844 43 1 1.3736 -7.6686 8.1116 44 1 2.6529 -6.8777 9.0636 45 1 1.5263 -5.8952 8.0972 46 1 4.1175 -8.4783 7.8256 47 1 4.5091 -8.0790 6.1358 48 1 8.4634 -6.7468 8.3033 49 1 0.7884 -5.5262 6.5224 50 1 0.2067 -4.4249 4.3999 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809730004.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:47 Heat of formation + Delta-G solvation = 52.620489 kcal Electronic energy + Delta-G solvation = -24898.996943 eV Core-core repulsion = 21540.711005 eV Total energy + Delta-G solvation = -3358.285938 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.30912 -38.30765 -36.84001 -35.32810 -32.64762 -30.90164 -30.56449 -29.04121 -28.26602 -27.86316 -27.11163 -25.44483 -24.16446 -22.68467 -21.67618 -21.31612 -20.60533 -19.52726 -16.94347 -16.67302 -16.30411 -15.91678 -15.40704 -15.33304 -14.79732 -14.58670 -14.47164 -14.23819 -13.87693 -13.63851 -13.25324 -13.06741 -12.99187 -12.87209 -12.61516 -12.41177 -12.19905 -12.05408 -11.85249 -11.63416 -11.61311 -11.54060 -11.49524 -11.41419 -10.97849 -10.82208 -10.61879 -10.59725 -10.24811 -10.05074 -9.58872 -8.90150 -8.66398 -8.64607 -8.31673 -8.22062 -6.40643 -6.14984 -4.14944 2.06876 2.17673 3.20880 3.28817 3.29585 3.55197 4.05191 4.20324 4.31648 4.61448 4.70845 4.88661 5.02959 5.10582 5.15292 5.15881 5.24660 5.29313 5.36813 5.42924 5.50858 5.56352 5.58058 5.59179 5.62125 5.65204 5.75763 5.78208 5.81128 5.88537 5.96071 6.01753 6.19085 6.23620 6.31769 6.37791 6.55521 6.69263 6.73304 6.74703 6.75203 7.00262 7.05387 7.08555 7.17680 7.29974 7.52109 7.54332 8.04791 8.34352 8.51213 8.92919 9.44899 10.98053 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.019533 B = 0.002719 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.163954 B =10296.567312 C =10971.644904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.550 5.550 3 C 0.026 3.974 4 C 0.057 3.943 5 C 0.059 3.941 6 N -0.537 5.537 7 C 0.019 3.981 8 C 0.112 3.888 9 C -0.164 4.164 10 C -0.066 4.066 11 C -0.188 4.188 12 C 0.241 3.759 13 N -0.612 5.612 14 C 0.099 3.901 15 C 0.221 3.779 16 C -0.534 4.534 17 H 0.076 0.924 18 C 0.072 3.928 19 N -0.895 5.895 20 Si 0.872 3.128 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.266 1.266 24 C -0.218 4.218 25 C -0.052 4.052 26 H 0.026 0.974 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.026 0.974 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.039 0.961 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.022 0.978 39 H 0.072 0.928 40 H 0.034 0.966 41 H 0.108 0.892 42 H 0.127 0.873 43 H 0.036 0.964 44 H 0.068 0.932 45 H 0.058 0.942 46 H 0.027 0.973 47 H 0.027 0.973 48 H 0.265 0.735 49 H 0.114 0.886 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.079 8.104 -14.183 21.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.274 5.274 3 C -0.123 4.123 4 C -0.071 4.071 5 C -0.069 4.069 6 N -0.262 5.262 7 C -0.129 4.129 8 C -0.015 4.015 9 C -0.167 4.167 10 C -0.085 4.085 11 C -0.210 4.210 12 C 0.134 3.866 13 N -0.318 5.318 14 C -0.045 4.045 15 C 0.099 3.901 16 C -0.572 4.572 17 H 0.094 0.906 18 C -0.130 4.130 19 N -0.533 5.533 20 Si 0.699 3.301 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.190 1.190 24 C -0.241 4.241 25 C -0.071 4.071 26 H 0.045 0.955 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.044 0.956 32 H 0.062 0.938 33 H 0.094 0.906 34 H 0.057 0.943 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.041 0.959 39 H 0.091 0.909 40 H 0.052 0.948 41 H 0.126 0.874 42 H 0.145 0.855 43 H 0.054 0.946 44 H 0.087 0.913 45 H 0.076 0.924 46 H 0.045 0.955 47 H 0.045 0.955 48 H 0.075 0.925 49 H 0.132 0.868 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -13.817 7.996 -13.920 21.180 hybrid contribution 0.527 -0.768 0.031 0.932 sum -13.289 7.228 -13.889 20.537 Atomic orbital electron populations 1.22440 0.87483 1.02385 1.00397 1.61938 1.08064 1.13866 1.43569 1.22363 1.00821 0.88661 1.00435 1.22129 1.00385 0.93335 0.91299 1.22051 0.99960 0.92902 0.92034 1.61973 1.08330 1.13890 1.41979 1.22501 0.87198 1.02037 1.01132 1.20813 0.99195 0.86974 0.94474 1.19138 0.97206 1.04576 0.95741 1.20663 0.95255 0.95990 0.96636 1.20782 1.01199 1.06465 0.92559 1.17915 0.92280 0.90116 0.86262 1.46706 1.21568 1.54893 1.08591 1.21492 0.93331 0.99977 0.89719 1.19652 0.81668 0.91977 0.96775 1.21480 0.92415 0.97925 1.45407 0.90557 1.24903 0.96100 0.97455 0.94590 1.69904 1.01950 1.35263 1.46174 0.86917 0.78598 0.85803 0.78813 1.19912 1.20957 1.19031 1.20561 0.98407 1.06329 0.98836 1.20487 0.98102 0.96601 0.91911 0.95497 0.91599 0.91123 0.91336 0.91438 0.95577 0.93791 0.90624 0.94282 0.91056 0.91800 0.90074 0.95905 0.90947 0.94776 0.87362 0.85481 0.94563 0.91296 0.92369 0.95471 0.95525 0.92512 0.86803 0.87262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.32 60.07 0.56 0.73 16 2 N -0.55 -5.13 5.02 -251.26 -1.26 -6.39 16 3 C 0.03 0.20 9.57 60.06 0.57 0.77 16 4 C 0.06 0.58 4.88 -3.83 -0.02 0.56 16 5 C 0.06 0.62 4.88 -3.83 -0.02 0.60 16 6 N -0.54 -6.75 4.75 -244.36 -1.16 -7.92 16 7 C 0.02 0.25 8.98 60.07 0.54 0.79 16 8 C 0.11 1.42 5.12 -4.98 -0.03 1.40 16 9 C -0.16 -2.50 4.88 -104.59 -0.51 -3.02 16 10 C -0.07 -1.11 7.90 -39.61 -0.31 -1.42 16 11 C -0.19 -3.69 9.21 -39.38 -0.36 -4.06 16 12 C 0.24 4.78 6.55 -83.78 -0.55 4.23 16 13 N -0.61 -12.78 2.99 -181.00 -0.54 -13.32 16 14 C 0.10 1.69 10.19 59.85 0.61 2.30 16 15 C 0.22 5.18 3.98 -5.20 -0.02 5.16 16 16 C -0.53 -14.79 9.94 -34.44 -0.34 -15.13 16 17 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 18 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 19 N -0.89 -26.95 13.96 55.43 0.77 -26.18 16 20 Si 0.87 20.67 27.47 -169.99 -4.67 16.00 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 24 C -0.22 -3.76 9.21 -39.38 -0.36 -4.12 16 25 C -0.05 -0.80 9.69 -39.61 -0.38 -1.19 16 26 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 28 H 0.07 0.54 6.47 -51.93 -0.34 0.20 16 29 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 30 H 0.07 0.45 8.12 -51.93 -0.42 0.02 16 31 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.04 0.49 8.12 -51.93 -0.42 0.06 16 33 H 0.08 0.79 6.47 -51.93 -0.34 0.45 16 34 H 0.04 0.43 8.12 -51.92 -0.42 0.01 16 35 H 0.07 0.71 6.34 -51.93 -0.33 0.38 16 36 H 0.06 0.76 6.47 -51.93 -0.34 0.42 16 37 H 0.08 1.21 5.91 -51.93 -0.31 0.90 16 38 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.07 0.82 7.87 -51.93 -0.41 0.42 16 40 H 0.03 0.42 8.06 -51.93 -0.42 0.00 16 41 H 0.11 1.62 8.00 -52.48 -0.42 1.20 16 42 H 0.13 2.70 6.14 -52.49 -0.32 2.37 16 43 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 45 H 0.06 0.90 6.20 -51.92 -0.32 0.58 16 46 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 47 H 0.03 0.62 5.62 -51.93 -0.29 0.33 16 48 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 49 H 0.11 1.77 6.14 -52.49 -0.32 1.45 16 50 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 387.23 15.07 5.84 5.84 Total: -1.00 -30.23 387.23 -10.50 -40.72 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -8.75 Total: 1.70 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -0.72 Total: -10.46 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: -2.19 Total: -53.80 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.67 Total: 16.00 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.23 -10.50 -40.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809730004.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.344 kcal (2) G-P(sol) polarization free energy of solvation -30.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds